Wall clock time and date at job start Tue Mar 31 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 119.99854 * 2 1 4 4 O 1.21494 * 119.99635 * 185.04000 * 3 2 1 5 5 C 1.48306 * 119.99871 * 5.04336 * 3 2 1 6 6 N 1.32886 * 120.14451 * 283.20260 * 5 3 2 7 7 C 1.31841 * 119.99559 * 179.70110 * 6 5 3 8 8 C 1.39003 * 120.29077 * 0.60273 * 7 6 5 9 9 N 1.31836 * 120.29013 * 359.67580 * 8 7 6 10 10 C 1.32896 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.48307 * 120.14438 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99734 * 354.71810 * 11 10 9 13 13 O 1.21486 * 119.99877 * 174.71722 * 11 10 9 14 14 C 1.46498 * 120.00046 * 179.97438 * 2 1 3 15 15 H 1.08992 * 109.47132 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.46611 * 60.00606 * 14 2 1 17 17 N 1.46503 * 109.47200 * 54.99961 * 16 14 2 18 18 C 1.36939 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99860 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00264 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00413 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46787 * 60.00172 * 22 20 18 24 24 H 1.48498 * 109.47373 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46802 * 300.00451 * 22 20 18 26 26 C 1.52998 * 109.47463 * 300.00774 * 14 2 1 27 27 C 1.52996 * 117.50020 * 248.74494 * 26 14 2 28 28 C 1.52999 * 117.49879 * 180.08533 * 26 14 2 29 29 H 1.08997 * 109.47357 * 265.33163 * 1 2 3 30 30 H 1.09003 * 109.46778 * 25.33198 * 1 2 3 31 31 H 1.08998 * 109.46762 * 145.33123 * 1 2 3 32 32 H 1.08005 * 119.85566 * 180.27756 * 7 6 5 33 33 H 1.08005 * 119.85443 * 179.70280 * 8 7 6 34 34 H 0.97002 * 120.00409 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99642 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.47561 * 294.99657 * 16 14 2 37 37 H 1.09001 * 109.47125 * 174.99386 * 16 14 2 38 38 H 0.97003 * 120.00109 * 359.97438 * 17 16 14 39 39 H 0.97002 * 119.99549 * 179.97438 * 21 20 18 40 40 H 1.09008 * 115.55060 * 34.41400 * 26 14 2 41 41 H 1.09009 * 117.49522 * 359.97438 * 27 26 14 42 42 H 1.08993 * 117.50153 * 145.02014 * 27 26 14 43 43 H 1.09002 * 117.49884 * 214.97905 * 28 26 14 44 44 H 1.09001 * 117.49894 * 359.96904 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3503 1.1692 -0.0924 5 6 1.4016 2.4491 0.1129 6 7 0.7579 2.9436 -0.9392 7 6 0.0985 4.0804 -0.8339 8 6 0.0830 4.7730 0.3712 9 7 0.7224 4.2956 1.4207 10 6 1.3858 3.1478 1.3291 11 6 2.1066 2.6081 2.5075 12 7 2.1796 3.3316 3.6423 13 8 2.6313 1.5139 2.4499 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8280 -2.0714 -1.2484 17 7 2.0708 -1.2571 -2.4419 18 6 1.8115 -1.7697 -3.6849 19 1 1.4275 -2.7741 -3.7855 20 6 2.0411 -0.9980 -4.8156 21 7 2.5086 0.2263 -4.6930 22 14 1.6880 -1.6975 -6.5114 23 1 0.2506 -2.0577 -6.6087 24 1 2.0152 -0.6816 -7.5439 25 1 2.5179 -2.9095 -6.7295 26 6 1.8278 -2.0706 1.2500 27 6 2.9086 -2.2537 2.3174 28 6 2.4944 -3.4351 1.4366 29 1 -0.3634 -0.0836 1.0242 30 1 -0.3633 0.9289 -0.4397 31 1 -0.3633 -0.8452 -0.5846 32 1 -0.4277 4.4779 -1.6893 33 1 -0.4554 5.7060 0.4482 34 1 1.7603 4.2052 3.6884 35 1 2.6507 2.9785 4.4132 36 1 0.7742 -2.3468 -1.2048 37 1 2.4378 -2.9737 -1.2941 38 1 2.4154 -0.3548 -2.3515 39 1 2.6693 0.7654 -5.4833 40 1 0.7978 -1.9629 1.5901 41 1 3.8832 -1.8031 2.1292 42 1 2.5897 -2.2668 3.3595 43 1 1.9030 -4.2250 1.8997 44 1 3.1959 -3.7617 0.6689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676274159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:48 Heat of formation + Delta-G solvation = 39.050162 kcal Electronic energy + Delta-G solvation = -29933.357913 eV Core-core repulsion = 25888.201751 eV Total energy + Delta-G solvation = -4045.156162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66317 -39.44689 -39.13501 -37.31801 -35.03700 -34.84204 -33.86762 -33.56096 -32.02878 -30.96625 -28.23121 -26.59551 -25.83852 -25.39640 -23.92197 -22.30130 -21.57869 -21.41529 -20.77242 -19.02200 -18.41798 -18.24276 -17.41804 -16.96541 -16.63346 -16.42944 -15.61879 -15.46611 -15.01577 -14.69608 -14.60138 -14.40523 -14.15395 -13.79388 -13.68736 -13.21364 -12.98579 -12.90257 -12.54005 -12.11322 -11.96167 -11.89375 -11.42576 -11.40131 -11.27460 -10.93902 -10.73815 -10.59567 -10.58177 -10.21432 -10.07011 -9.91079 -9.87933 -9.69866 -9.61004 -9.50474 -9.15605 -8.74408 -8.13133 -6.76671 -5.59815 -2.89558 0.06312 0.69077 2.54308 2.85538 2.97322 3.15781 3.49063 3.51273 3.55200 3.56709 3.72484 4.04045 4.19468 4.20408 4.56013 4.68424 4.85653 4.90370 4.98321 5.00867 5.22115 5.27121 5.44042 5.57957 5.68676 5.72957 5.84928 5.89143 5.92624 6.02925 6.12127 6.17871 6.38522 6.40922 6.48490 6.52703 6.61933 6.74507 6.84859 7.05038 7.08512 7.39023 7.75608 7.80758 8.00378 8.53531 8.56749 9.67918 10.27867 10.63559 11.61711 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.004846 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.013136 B = 5776.107805 C = 7775.609775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.574 5.574 3 C 0.599 3.401 4 O -0.507 6.507 5 C 0.119 3.881 6 N -0.396 5.396 7 C 0.082 3.918 8 C 0.053 3.947 9 N -0.413 5.413 10 C 0.047 3.953 11 C 0.573 3.427 12 N -0.836 5.836 13 O -0.494 6.494 14 C 0.170 3.830 15 H 0.102 0.898 16 C 0.148 3.852 17 N -0.727 5.727 18 C -0.240 4.240 19 H 0.068 0.932 20 C -0.011 4.011 21 N -0.925 5.925 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.154 4.154 27 C -0.169 4.169 28 C -0.174 4.174 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.183 0.817 34 H 0.409 0.591 35 H 0.407 0.593 36 H 0.021 0.979 37 H 0.030 0.970 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 8.466 18.662 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.306 5.306 3 C 0.382 3.618 4 O -0.380 6.380 5 C -0.024 4.024 6 N -0.111 5.111 7 C -0.081 4.081 8 C -0.111 4.111 9 N -0.130 5.130 10 C -0.095 4.095 11 C 0.354 3.646 12 N -0.401 5.401 13 O -0.366 6.366 14 C 0.067 3.933 15 H 0.120 0.880 16 C 0.019 3.981 17 N -0.372 5.372 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.174 4.174 27 C -0.206 4.206 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.202 0.798 33 H 0.199 0.801 34 H 0.239 0.761 35 H 0.239 0.761 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.222 0.778 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.874 7.558 18.275 20.937 hybrid contribution -0.430 0.585 -0.766 1.056 sum -7.305 8.143 17.509 20.645 Atomic orbital electron populations 1.21713 0.80095 1.04007 1.00387 1.47182 1.06485 1.04852 1.72075 1.17142 0.86487 0.81934 0.76209 1.90801 1.12736 1.85652 1.48797 1.22344 0.93512 0.97091 0.89420 1.68881 1.03338 1.11248 1.27654 1.24334 0.94248 0.90519 0.98970 1.24019 0.96812 1.00835 0.89387 1.68316 1.04439 1.09208 1.31059 1.22010 0.99243 0.93399 0.94809 1.17621 0.79745 0.84828 0.82380 1.43510 1.58945 1.23040 1.14563 1.90968 1.44484 1.19367 1.81775 1.20920 0.97764 0.81545 0.93106 0.88047 1.20943 0.97715 0.93535 0.85913 1.42316 1.78782 1.15862 1.00247 1.19135 1.36384 0.97895 0.83716 0.91425 1.24734 1.02205 0.96287 0.97556 1.69707 1.50809 1.08603 1.28202 0.86325 0.77796 0.77703 0.84655 1.21439 1.21810 1.21398 1.22445 0.97998 0.99035 0.97911 1.22929 0.99807 1.02129 0.95708 1.22945 1.03888 0.91135 1.03166 0.93687 0.91610 0.89766 0.79837 0.80055 0.76149 0.76134 0.96157 0.95218 0.77786 0.93650 0.88017 0.88665 0.89427 0.89013 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 9.34 59.85 0.56 1.87 16 2 N -0.57 -11.05 2.24 -174.88 -0.39 -11.44 16 3 C 0.60 12.64 4.75 -12.12 -0.06 12.58 16 4 O -0.51 -12.58 15.75 -12.93 -0.20 -12.78 16 5 C 0.12 2.10 5.08 -82.51 -0.42 1.68 16 6 N -0.40 -6.61 9.48 -9.31 -0.09 -6.69 16 7 C 0.08 0.90 11.23 -17.26 -0.19 0.71 16 8 C 0.05 0.46 11.23 -17.27 -0.19 0.27 16 9 N -0.41 -4.56 9.73 -9.31 -0.09 -4.65 16 10 C 0.05 0.68 6.78 -82.50 -0.56 0.12 16 11 C 0.57 8.15 8.06 -12.12 -0.10 8.05 16 12 N -0.84 -7.58 8.86 30.63 0.27 -7.30 16 13 O -0.49 -8.82 14.75 -12.93 -0.19 -9.01 16 14 C 0.17 3.28 2.42 -67.93 -0.16 3.12 16 15 H 0.10 2.25 6.67 -51.93 -0.35 1.90 16 16 C 0.15 3.19 5.25 -4.04 -0.02 3.17 16 17 N -0.73 -19.82 5.43 -59.91 -0.33 -20.14 16 18 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -29.54 13.06 55.49 0.72 -28.81 16 22 Si 0.90 23.19 29.55 -169.99 -5.02 18.16 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C -0.15 -2.38 5.21 -90.62 -0.47 -2.85 16 27 C -0.17 -2.40 10.18 -26.70 -0.27 -2.68 16 28 C -0.17 -2.34 9.80 -26.70 -0.26 -2.61 16 29 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 30 H 0.07 1.06 6.10 -51.93 -0.32 0.75 16 31 H 0.08 1.38 6.56 -51.93 -0.34 1.04 16 32 H 0.18 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.18 0.71 8.06 -52.48 -0.42 0.28 16 34 H 0.41 2.82 8.20 -40.82 -0.33 2.48 16 35 H 0.41 2.92 8.93 -40.82 -0.36 2.55 16 36 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 37 H 0.03 0.65 7.48 -51.93 -0.39 0.26 16 38 H 0.39 11.59 7.06 -40.82 -0.29 11.30 16 39 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.10 1.45 7.31 -51.92 -0.38 1.07 16 41 H 0.09 1.49 8.05 -51.92 -0.42 1.07 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.38 7.67 -51.93 -0.40 0.99 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -39.17 372.36 -7.69 -46.86 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.58 Total: 14.38 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -2.40 Total: 15.83 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: 0.10 Total: -79.05 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.39 Total: -21.79 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.17 -7.69 -46.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676274159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.907 kcal (2) G-P(sol) polarization free energy of solvation -39.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds