Wall clock time and date at job start Tue Mar 31 2020 17:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 119.99854 * 2 1 4 4 O 1.21494 * 119.99635 * 185.04000 * 3 2 1 5 5 C 1.48306 * 119.99871 * 5.04336 * 3 2 1 6 6 N 1.32886 * 120.14451 * 283.20260 * 5 3 2 7 7 C 1.31841 * 119.99559 * 179.70110 * 6 5 3 8 8 C 1.39003 * 120.29077 * 0.60273 * 7 6 5 9 9 N 1.31836 * 120.29013 * 359.67580 * 8 7 6 10 10 C 1.32896 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.48307 * 120.14438 * 179.97438 * 10 9 8 12 12 N 1.34775 * 119.99734 * 354.71810 * 11 10 9 13 13 O 1.21486 * 119.99877 * 174.71722 * 11 10 9 14 14 C 1.46498 * 120.00046 * 179.97438 * 2 1 3 15 15 H 1.08992 * 109.47132 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.46611 * 60.00606 * 14 2 1 17 17 N 1.46503 * 109.47200 * 54.99961 * 16 14 2 18 18 C 1.36939 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99860 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00264 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00413 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46787 * 60.00172 * 22 20 18 24 24 H 1.48498 * 109.47373 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46802 * 300.00451 * 22 20 18 26 26 C 1.52998 * 109.47463 * 300.00774 * 14 2 1 27 27 C 1.52996 * 117.50020 * 248.74494 * 26 14 2 28 28 C 1.52999 * 117.49879 * 180.08533 * 26 14 2 29 29 H 1.08997 * 109.47357 * 265.33163 * 1 2 3 30 30 H 1.09003 * 109.46778 * 25.33198 * 1 2 3 31 31 H 1.08998 * 109.46762 * 145.33123 * 1 2 3 32 32 H 1.08005 * 119.85566 * 180.27756 * 7 6 5 33 33 H 1.08005 * 119.85443 * 179.70280 * 8 7 6 34 34 H 0.97002 * 120.00409 * 0.02562 * 12 11 10 35 35 H 0.97006 * 119.99642 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.47561 * 294.99657 * 16 14 2 37 37 H 1.09001 * 109.47125 * 174.99386 * 16 14 2 38 38 H 0.97003 * 120.00109 * 359.97438 * 17 16 14 39 39 H 0.97002 * 119.99549 * 179.97438 * 21 20 18 40 40 H 1.09008 * 115.55060 * 34.41400 * 26 14 2 41 41 H 1.09009 * 117.49522 * 359.97438 * 27 26 14 42 42 H 1.08993 * 117.50153 * 145.02014 * 27 26 14 43 43 H 1.09002 * 117.49884 * 214.97905 * 28 26 14 44 44 H 1.09001 * 117.49894 * 359.96904 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3503 1.1692 -0.0924 5 6 1.4016 2.4491 0.1129 6 7 0.7579 2.9436 -0.9392 7 6 0.0985 4.0804 -0.8339 8 6 0.0830 4.7730 0.3712 9 7 0.7224 4.2956 1.4207 10 6 1.3858 3.1478 1.3291 11 6 2.1066 2.6081 2.5075 12 7 2.1796 3.3316 3.6423 13 8 2.6313 1.5139 2.4499 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0695 0.0009 16 6 1.8280 -2.0714 -1.2484 17 7 2.0708 -1.2571 -2.4419 18 6 1.8115 -1.7697 -3.6849 19 1 1.4275 -2.7741 -3.7855 20 6 2.0411 -0.9980 -4.8156 21 7 2.5086 0.2263 -4.6930 22 14 1.6880 -1.6975 -6.5114 23 1 0.2506 -2.0577 -6.6087 24 1 2.0152 -0.6816 -7.5439 25 1 2.5179 -2.9095 -6.7295 26 6 1.8278 -2.0706 1.2500 27 6 2.9086 -2.2537 2.3174 28 6 2.4944 -3.4351 1.4366 29 1 -0.3634 -0.0836 1.0242 30 1 -0.3633 0.9289 -0.4397 31 1 -0.3633 -0.8452 -0.5846 32 1 -0.4277 4.4779 -1.6893 33 1 -0.4554 5.7060 0.4482 34 1 1.7603 4.2052 3.6884 35 1 2.6507 2.9785 4.4132 36 1 0.7742 -2.3468 -1.2048 37 1 2.4378 -2.9737 -1.2941 38 1 2.4154 -0.3548 -2.3515 39 1 2.6693 0.7654 -5.4833 40 1 0.7978 -1.9629 1.5901 41 1 3.8832 -1.8031 2.1292 42 1 2.5897 -2.2668 3.3595 43 1 1.9030 -4.2250 1.8997 44 1 3.1959 -3.7617 0.6689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676274159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:45 Heat of formation + Delta-G solvation = 6.815952 kcal Electronic energy + Delta-G solvation = -29934.755694 eV Core-core repulsion = 25888.201751 eV Total energy + Delta-G solvation = -4046.553943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71628 -40.85666 -40.21113 -38.72210 -36.60108 -35.99867 -35.63211 -34.52997 -33.35672 -32.74195 -29.95818 -27.96974 -26.91980 -26.65691 -25.71416 -23.77785 -22.89240 -22.56586 -22.02684 -20.52537 -19.39539 -19.23135 -19.11503 -18.72375 -17.96837 -17.45488 -16.74807 -16.57843 -16.40660 -16.31287 -15.97385 -15.64659 -15.38221 -15.24373 -15.03043 -14.87561 -14.61085 -14.42122 -13.97187 -13.64594 -13.34948 -13.16230 -12.93713 -12.85840 -12.72619 -12.49511 -12.41705 -12.22052 -12.13461 -11.76743 -11.73049 -11.49056 -11.19205 -10.94114 -10.89698 -10.83326 -10.59754 -10.28226 -9.62667 -8.98642 -7.89032 -5.21021 -0.94109 -0.25737 1.44404 1.45173 1.50305 1.53810 1.56213 1.76070 2.06404 2.50085 2.56460 2.85155 2.87737 3.02897 3.24762 3.41957 3.55423 3.62038 3.89987 3.97035 4.04430 4.07414 4.10937 4.19204 4.29900 4.30443 4.41816 4.47325 4.64574 4.75240 4.79328 4.90204 5.02670 5.05976 5.08603 5.25502 5.29537 5.47703 5.57125 5.71032 5.84171 6.19194 6.27374 6.29929 6.45265 7.03682 7.13512 7.34283 8.09391 8.34717 9.33614 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.004846 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.013136 B = 5776.107805 C = 7775.609775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.576 5.576 3 C 0.590 3.410 4 O -0.568 6.568 5 C 0.083 3.917 6 N -0.446 5.446 7 C 0.086 3.914 8 C 0.087 3.913 9 N -0.405 5.405 10 C 0.042 3.958 11 C 0.565 3.435 12 N -0.806 5.806 13 O -0.541 6.541 14 C 0.177 3.823 15 H 0.060 0.940 16 C 0.149 3.851 17 N -0.742 5.742 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.978 3.022 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.279 1.279 26 C -0.163 4.163 27 C -0.166 4.166 28 C -0.156 4.156 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.245 0.755 34 H 0.422 0.578 35 H 0.418 0.582 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 9.279 19.818 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.306 5.306 3 C 0.376 3.624 4 O -0.446 6.446 5 C -0.058 4.058 6 N -0.162 5.162 7 C -0.078 4.078 8 C -0.078 4.078 9 N -0.122 5.122 10 C -0.097 4.097 11 C 0.346 3.654 12 N -0.372 5.372 13 O -0.417 6.417 14 C 0.073 3.927 15 H 0.079 0.921 16 C 0.022 3.978 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.807 3.193 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.183 4.183 27 C -0.203 4.203 28 C -0.193 4.193 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.261 0.739 34 H 0.255 0.745 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.887 8.328 19.522 23.414 hybrid contribution 0.410 0.487 -1.092 1.264 sum -9.476 8.816 18.429 22.520 Atomic orbital electron populations 1.21816 0.78282 1.03639 1.02150 1.47313 1.07615 1.04468 1.71211 1.17784 0.86186 0.83571 0.74825 1.90729 1.15379 1.86872 1.51580 1.21789 0.96059 0.96586 0.91322 1.68725 1.05028 1.14170 1.28261 1.25114 0.92683 0.88730 1.01286 1.25028 0.94029 1.01361 0.87391 1.68485 1.04407 1.07528 1.31771 1.21913 0.99775 0.94204 0.93773 1.17804 0.79539 0.84640 0.83396 1.43289 1.57640 1.22907 1.13331 1.90946 1.46619 1.21518 1.82585 1.20677 0.95719 0.82196 0.94067 0.92147 1.21091 0.98344 0.93203 0.85154 1.42533 1.78775 1.15609 1.01531 1.19611 1.35300 0.98243 0.84707 0.90291 1.25652 1.02681 0.96659 1.01797 1.69926 1.52715 1.10281 1.28894 0.85153 0.78244 0.76802 0.79141 1.19834 1.22307 1.20534 1.22348 0.99229 1.00108 0.96589 1.22907 0.98273 1.02372 0.96718 1.23041 1.03054 0.90943 1.02252 0.90631 0.91810 0.90253 0.76147 0.73931 0.74521 0.74842 0.94519 0.94960 0.79836 0.94290 0.86094 0.91124 0.87091 0.85758 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 9.34 127.77 1.19 3.92 16 2 N -0.58 -23.36 2.24 -825.48 -1.85 -25.21 16 3 C 0.59 26.78 4.75 86.92 0.41 27.20 16 4 O -0.57 -31.04 15.75 13.81 0.22 -30.82 16 5 C 0.08 3.04 5.08 42.16 0.21 3.25 16 6 N -0.45 -15.08 9.48 -183.37 -1.74 -16.82 16 7 C 0.09 1.67 11.23 84.88 0.95 2.63 16 8 C 0.09 1.14 11.23 84.88 0.95 2.09 16 9 N -0.40 -7.86 9.73 -183.37 -1.78 -9.64 16 10 C 0.04 1.22 6.78 42.16 0.29 1.51 16 11 C 0.57 16.30 8.06 86.92 0.70 17.00 16 12 N -0.81 -13.72 8.86 -175.30 -1.55 -15.27 16 13 O -0.54 -20.40 14.75 13.83 0.20 -20.20 16 14 C 0.18 7.24 2.42 44.99 0.11 7.35 16 15 H 0.06 2.96 6.67 -2.39 -0.02 2.94 16 16 C 0.15 6.68 5.25 86.38 0.45 7.13 16 17 N -0.74 -42.18 5.43 -343.45 -1.87 -44.04 16 18 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 21 N -0.97 -64.14 13.06 21.65 0.28 -63.86 16 22 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 C -0.16 -5.04 5.21 -10.80 -0.06 -5.10 16 27 C -0.17 -4.74 10.18 30.62 0.31 -4.43 16 28 C -0.16 -4.04 9.80 30.62 0.30 -3.74 16 29 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 30 H 0.06 2.11 6.10 -2.39 -0.01 2.10 16 31 H 0.08 2.62 6.56 -2.39 -0.02 2.60 16 32 H 0.22 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.24 0.16 8.06 -2.91 -0.02 0.14 16 34 H 0.42 4.89 8.20 -92.71 -0.76 4.13 16 35 H 0.42 5.55 8.93 -92.70 -0.83 4.72 16 36 H 0.04 1.54 6.92 -2.39 -0.02 1.53 16 37 H 0.03 1.43 7.48 -2.39 -0.02 1.42 16 38 H 0.37 23.56 7.06 -92.71 -0.65 22.90 16 39 H 0.25 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.12 3.27 7.31 -2.38 -0.02 3.25 16 41 H 0.07 2.37 8.05 -2.38 -0.02 2.35 16 42 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.09 2.46 7.67 -2.39 -0.02 2.44 16 Total: -1.00 -93.86 372.36 -0.08 -93.94 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -1.16 Total: 40.76 kcal Atomic # 6 Polarization: 33.62 SS G_CDS: 7.14 Total: 40.75 kcal Atomic # 7 Polarization: -166.33 SS G_CDS: -8.51 Total: -174.84 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: 0.42 Total: -51.02 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -93.86 -0.08 -93.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676274159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.752 kcal (2) G-P(sol) polarization free energy of solvation -93.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds