Wall clock time and date at job start Tue Mar 31 2020 17:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 6 6 O 1.42900 * 109.47041 * 299.99263 * 4 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.47094 * 184.99933 * 7 4 3 9 9 C 1.36939 * 120.00025 * 179.97438 * 8 7 4 10 10 H 1.08000 * 119.99887 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99964 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99736 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99921 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47650 * 59.99249 * 13 11 9 15 15 H 1.48500 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46784 * 299.99415 * 13 11 9 17 17 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 18 18 O 1.21285 * 119.99996 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00318 * 0.02562 * 17 2 1 20 20 N 1.46499 * 109.47385 * 180.02562 * 19 17 2 21 21 N 1.39841 * 125.38398 * 269.69028 * 20 19 17 22 22 C 1.30235 * 110.09008 * 179.83899 * 21 20 19 23 23 C 1.45862 * 107.65726 * 0.41165 * 22 21 20 24 24 C 1.39996 * 134.26140 * 179.71919 * 23 22 21 25 25 C 1.37010 * 118.15571 * 180.02562 * 24 23 22 26 26 C 1.38808 * 119.64943 * 0.02562 * 25 24 23 27 27 N 1.31502 * 121.58804 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47429 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 30 30 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 31 31 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 32 32 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 33 33 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 34 34 H 0.96698 * 114.00516 * 300.00983 * 6 4 3 35 35 H 1.09008 * 109.46864 * 304.99696 * 7 4 3 36 36 H 1.09000 * 109.47679 * 64.99728 * 7 4 3 37 37 H 0.97004 * 120.00359 * 359.97438 * 8 7 4 38 38 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 39 39 H 1.09006 * 109.47054 * 299.99977 * 19 17 2 40 40 H 1.09003 * 109.47164 * 59.99309 * 19 17 2 41 41 H 1.07998 * 126.17360 * 180.15816 * 22 21 20 42 42 H 1.08004 * 120.91726 * 0.05063 * 24 23 22 43 43 H 1.07999 * 120.17740 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.20782 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0415 0.9507 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2168 3.0357 1.4425 8 7 3.5653 3.3984 2.8185 9 6 4.2573 4.5535 3.0677 10 1 4.5458 5.1973 2.2500 11 6 4.5880 4.8970 4.3715 12 7 4.2359 4.1125 5.3681 13 14 5.5313 6.4730 4.7115 14 1 4.7467 7.6350 4.2224 15 1 5.7588 6.6083 6.1727 16 1 6.8393 6.4282 4.0096 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3855 -2.4723 -0.0017 20 7 2.3375 -3.5858 -0.0014 21 7 2.8599 -4.2048 -1.1414 22 6 3.6800 -5.1563 -0.7977 23 6 3.7183 -5.2024 0.6597 24 6 4.3944 -5.9952 1.5947 25 6 4.1819 -5.7484 2.9256 26 6 3.3141 -4.7339 3.3058 27 7 2.6851 -3.9964 2.4172 28 6 2.8512 -4.1889 1.1141 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6083 2.0284 -0.5138 33 1 3.1498 1.1384 -0.5139 34 1 0.6266 2.5438 1.7127 35 1 4.1276 2.9299 0.8529 36 1 2.5915 3.8159 1.0084 37 1 3.3059 2.8204 3.5530 38 1 4.4667 4.3528 6.2791 39 1 0.7585 -2.5307 0.8881 40 1 0.7591 -2.5294 -0.8919 41 1 4.2292 -5.7984 -1.4704 42 1 5.0651 -6.7793 1.2758 43 1 4.6869 -6.3399 3.6748 44 1 3.1516 -4.5458 4.3568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725699176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:58 Heat of formation + Delta-G solvation = 15.551432 kcal Electronic energy + Delta-G solvation = -28192.859040 eV Core-core repulsion = 24146.683897 eV Total energy + Delta-G solvation = -4046.175144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58421 -41.10803 -39.16558 -38.78225 -36.51161 -35.86391 -34.89214 -33.32683 -32.84735 -31.26699 -31.01032 -28.77185 -27.91270 -26.55570 -24.95713 -24.64354 -23.65783 -22.84916 -22.13547 -20.49752 -19.28637 -18.79713 -18.52436 -18.13330 -17.71950 -17.17254 -17.03364 -16.75295 -16.48248 -16.38441 -15.97636 -15.58796 -15.32445 -14.95641 -14.87147 -14.52244 -14.41874 -14.14631 -13.89251 -13.68915 -13.56008 -13.54563 -13.32687 -13.22034 -13.01032 -12.75817 -12.67253 -12.25475 -12.12101 -12.04755 -11.87179 -11.79088 -11.33519 -11.01666 -10.98731 -10.45939 -10.04413 -9.66248 -9.32418 -9.07139 -7.98031 -5.29355 -0.18809 0.33630 0.98536 1.37190 1.43665 1.46446 1.48311 1.54524 1.93564 2.52666 2.81193 3.19750 3.27735 3.31942 3.34496 3.42940 3.67746 3.70587 3.85202 3.93349 3.96911 4.07914 4.11187 4.18051 4.27838 4.40464 4.46068 4.48775 4.61262 4.63128 4.75418 4.80130 4.84372 4.95972 5.13832 5.20933 5.31833 5.36820 5.42649 5.57413 5.78903 6.20982 6.22066 6.39706 6.84917 6.91812 6.98127 7.27741 8.02362 8.26129 9.25372 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002702 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.207345 B =10359.412901 C =11648.795047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.599 5.599 3 C 0.098 3.902 4 C 0.107 3.893 5 H 0.053 0.947 6 O -0.559 6.559 7 C 0.125 3.875 8 N -0.743 5.743 9 C -0.253 4.253 10 H 0.079 0.921 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.981 3.019 14 H -0.272 1.272 15 H -0.294 1.294 16 H -0.278 1.278 17 C 0.488 3.512 18 O -0.581 6.581 19 C 0.132 3.868 20 N -0.395 5.395 21 N -0.263 5.263 22 C 0.097 3.903 23 C -0.249 4.249 24 C 0.010 3.990 25 C -0.213 4.213 26 C 0.155 3.845 27 N -0.543 5.543 28 C 0.288 3.712 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.385 0.615 35 H 0.021 0.979 36 H 0.045 0.955 37 H 0.372 0.628 38 H 0.252 0.748 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.245 0.755 42 H 0.181 0.819 43 H 0.179 0.821 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -23.110 -14.089 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C -0.026 4.026 4 C 0.046 3.954 5 H 0.071 0.929 6 O -0.366 6.366 7 C -0.002 4.002 8 N -0.385 5.385 9 C -0.384 4.384 10 H 0.097 0.903 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.809 3.191 14 H -0.198 1.198 15 H -0.220 1.220 16 H -0.204 1.204 17 C 0.275 3.725 18 O -0.460 6.460 19 C 0.007 3.993 20 N -0.185 5.185 21 N -0.074 5.074 22 C -0.102 4.102 23 C -0.259 4.259 24 C -0.018 4.018 25 C -0.234 4.234 26 C -0.013 4.013 27 N -0.259 5.259 28 C 0.051 3.949 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.204 0.796 38 H 0.061 0.939 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.261 0.739 42 H 0.199 0.801 43 H 0.196 0.804 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.431 -21.945 -14.571 27.979 hybrid contribution 1.263 0.426 0.950 1.637 sum -8.168 -21.519 -13.621 26.745 Atomic orbital electron populations 1.22242 0.76013 1.05309 1.03803 1.47778 1.08961 1.04408 1.71944 1.22032 0.98892 0.86007 0.95644 1.22111 0.85043 0.95268 0.92985 0.92903 1.86606 1.28547 1.63493 1.57919 1.21429 0.96954 0.94933 0.86894 1.42473 1.67316 1.25487 1.03246 1.19653 1.27169 0.99006 0.92613 0.90341 1.25709 1.03226 1.02629 0.95484 1.69866 1.53175 1.40263 0.98799 0.85111 0.78539 0.79131 0.76344 1.19787 1.21998 1.20435 1.21501 0.88086 0.86995 0.75876 1.90728 1.16233 1.87797 1.51285 1.21588 0.89237 0.80215 1.08264 1.47736 1.40620 1.29541 1.00598 1.76628 1.13376 1.09779 1.07634 1.25796 0.95800 0.95699 0.92871 1.20940 1.05911 1.03180 0.95840 1.21307 0.93618 0.95561 0.91301 1.22085 1.02416 1.01308 0.97617 1.23358 0.89751 0.89132 0.99047 1.66724 1.28988 1.30546 0.99623 1.19380 0.94328 0.92871 0.88352 0.89397 0.89873 0.89165 0.85810 0.90881 0.76600 0.96129 0.93682 0.79604 0.93927 0.84833 0.82851 0.73903 0.80127 0.80395 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.98 127.77 1.28 2.18 16 2 N -0.60 -14.45 2.80 -846.77 -2.37 -16.82 16 3 C 0.10 2.64 5.10 86.38 0.44 3.08 16 4 C 0.11 3.83 3.27 30.59 0.10 3.93 16 5 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 6 O -0.56 -18.59 12.00 -148.98 -1.79 -20.38 16 7 C 0.13 5.25 5.90 86.38 0.51 5.76 16 8 N -0.74 -40.85 5.55 -343.44 -1.91 -42.76 16 9 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 10 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 11 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 12 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 13 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 C 0.49 14.80 7.74 87.66 0.68 15.48 16 18 O -0.58 -24.16 16.01 -3.05 -0.05 -24.21 16 19 C 0.13 3.06 5.44 85.63 0.47 3.53 16 20 N -0.39 -11.21 3.13 -348.81 -1.09 -12.30 16 21 N -0.26 -6.83 12.40 -53.14 -0.66 -7.48 16 22 C 0.10 1.90 12.29 86.90 1.07 2.97 16 23 C -0.25 -5.68 6.38 -20.22 -0.13 -5.81 16 24 C 0.01 0.16 10.18 22.41 0.23 0.38 16 25 C -0.21 -3.26 10.04 22.12 0.22 -3.04 16 26 C 0.15 3.35 11.15 84.88 0.95 4.30 16 27 N -0.54 -16.23 10.40 -192.97 -2.01 -18.23 16 28 C 0.29 8.53 7.97 134.12 1.07 9.60 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.92 6.44 -2.39 -0.02 0.90 16 31 H 0.09 1.14 6.88 -2.39 -0.02 1.12 16 32 H 0.12 2.31 8.07 -2.39 -0.02 2.29 16 33 H 0.07 2.30 7.42 -2.39 -0.02 2.28 16 34 H 0.38 9.23 8.79 -74.06 -0.65 8.57 16 35 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.37 22.52 7.67 -92.71 -0.71 21.81 16 38 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.13 2.73 7.40 -2.38 -0.02 2.72 16 40 H 0.15 2.36 8.11 -2.39 -0.02 2.34 16 41 H 0.25 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -94.68 378.86 0.31 -94.37 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.31 Total: 36.47 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 8.18 Total: 24.06 kcal Atomic # 7 Polarization: -152.33 SS G_CDS: -7.75 Total: -160.08 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.84 Total: -44.58 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -94.68 0.31 -94.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725699176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.920 kcal (2) G-P(sol) polarization free energy of solvation -94.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds