Wall clock time and date at job start Tue Mar 31 2020 17:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99502 * 2 1 4 4 H 1.08005 * 119.99518 * 202.70464 * 3 2 1 5 5 C 1.38810 * 120.00531 * 22.70694 * 3 2 1 6 6 N 1.31622 * 119.99639 * 11.51789 * 5 3 2 7 7 Si 1.86796 * 120.00156 * 191.51304 * 5 3 2 8 8 H 1.48496 * 109.47013 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46945 * 120.00015 * 7 5 3 10 10 H 1.48494 * 109.47208 * 239.99832 * 7 5 3 11 11 C 1.46497 * 120.00295 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46947 * 270.00025 * 11 2 1 13 13 O 1.42895 * 109.47376 * 64.99561 * 12 11 2 14 14 C 1.42903 * 114.00048 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46954 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47011 * 65.00160 * 15 14 13 17 17 C 1.34777 * 119.99854 * 179.97438 * 16 15 14 18 18 O 1.21721 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.46587 * 120.00008 * 180.02562 * 17 16 15 20 20 C 1.40643 * 126.53830 * 359.97435 * 19 17 16 21 21 N 1.30701 * 108.72518 * 180.02562 * 20 19 17 22 22 N 1.39911 * 109.51868 * 359.97438 * 21 20 19 23 23 C 1.36314 * 132.15718 * 180.29863 * 22 21 20 24 24 C 1.35758 * 119.15356 * 180.17717 * 23 22 21 25 25 C 1.39968 * 119.35163 * 359.49911 * 24 23 22 26 26 N 1.31495 * 120.11018 * 0.25226 * 25 24 23 27 27 C 1.33386 * 120.85460 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47237 * 273.91346 * 1 2 3 29 29 H 1.08992 * 109.47572 * 33.91230 * 1 2 3 30 30 H 1.09004 * 109.47189 * 153.91700 * 1 2 3 31 31 H 0.96998 * 119.99802 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47498 * 149.99727 * 11 2 1 33 33 H 1.09000 * 109.46885 * 29.99369 * 11 2 1 34 34 H 1.09007 * 109.47016 * 304.99556 * 12 11 2 35 35 H 1.09005 * 109.47014 * 185.00061 * 12 11 2 36 36 H 1.09000 * 109.46857 * 60.00187 * 14 13 12 37 37 H 1.08999 * 109.47360 * 300.00396 * 14 13 12 38 38 H 1.09001 * 109.46906 * 305.00159 * 15 14 13 39 39 H 1.08999 * 109.46996 * 185.00509 * 15 14 13 40 40 H 0.96991 * 120.00519 * 359.97438 * 16 15 14 41 41 H 1.07998 * 125.63678 * 0.02562 * 20 19 17 42 42 H 1.07997 * 120.42700 * 359.94796 * 23 22 21 43 43 H 1.08001 * 120.32386 * 179.77502 * 24 23 22 44 44 H 1.08001 * 119.94180 * 180.27698 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1669 1.2222 -0.3610 5 6 1.5362 2.3416 0.4640 6 7 0.3917 2.2653 1.1096 7 14 2.3351 4.0047 0.1724 8 1 3.6066 3.8193 -0.5720 9 1 1.4181 4.8620 -0.6209 10 1 2.6154 4.6549 1.4777 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 8 1.2061 -1.9943 2.0806 14 6 1.3326 -2.4189 3.4393 15 6 -0.0564 -2.6933 4.0192 16 7 -0.6649 -3.8245 3.3147 17 6 -1.8971 -4.2486 3.6587 18 8 -2.5042 -3.6920 4.5550 19 6 -2.5057 -5.3808 2.9542 20 6 -1.9316 -6.1206 1.9049 21 7 -2.7747 -7.0485 1.5354 22 7 -3.9327 -6.9657 2.3161 23 6 -5.0830 -7.6971 2.3271 24 6 -6.0605 -7.3790 3.2138 25 6 -5.8616 -6.3159 4.1022 26 7 -4.7391 -5.6315 4.0712 27 6 -3.7767 -5.9351 3.1989 28 1 -0.3634 0.0701 1.0253 29 1 -0.3634 0.8528 -0.5733 30 1 -0.3634 -0.9230 -0.4518 31 1 -0.0371 3.0728 1.4335 32 1 3.1499 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5146 34 1 2.9643 -0.9138 1.9812 35 1 3.0734 -2.6069 1.4427 36 1 1.8213 -1.6368 4.0203 37 1 1.9300 -3.3296 3.4813 38 1 -0.6825 -1.8095 3.8964 39 1 0.0329 -2.9309 5.0792 40 1 -0.1811 -4.2683 2.6008 41 1 -0.9554 -5.9502 1.4754 42 1 -5.2165 -8.5169 1.6368 43 1 -6.9809 -7.9436 3.2365 44 1 -6.6311 -6.0574 4.8146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734281663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:03 Heat of formation + Delta-G solvation = 72.336554 kcal Electronic energy + Delta-G solvation = -27867.146815 eV Core-core repulsion = 23823.434059 eV Total energy + Delta-G solvation = -4043.712756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.76208 -39.30168 -38.27734 -37.48423 -35.33776 -34.38966 -34.20373 -31.62959 -31.38161 -30.28960 -28.94995 -27.65149 -25.65086 -25.29277 -24.31261 -22.95947 -22.82495 -21.96928 -20.37368 -20.25241 -18.73196 -17.73589 -17.23059 -16.79475 -16.52223 -16.18528 -15.99845 -15.91687 -15.03744 -14.69215 -14.55352 -14.50887 -14.01080 -13.76779 -13.56486 -13.35392 -13.27198 -13.04292 -12.98161 -12.45890 -12.06762 -11.85115 -11.58628 -11.44096 -11.30766 -10.86401 -10.77411 -10.71752 -10.45730 -10.16235 -10.02432 -10.00163 -9.84657 -9.76588 -9.67049 -8.94885 -8.83360 -8.43913 -8.27606 -6.61455 -5.60110 -3.06627 0.02661 0.40299 1.55688 1.89383 2.86574 3.31414 3.42900 3.46302 3.49632 3.51754 3.62657 3.77532 3.92036 4.25240 4.39943 4.57813 4.58576 4.77168 4.84686 5.00293 5.20981 5.36744 5.43044 5.50665 5.52259 5.62518 5.76210 5.83870 5.86555 6.03059 6.08047 6.21164 6.27714 6.29848 6.58886 6.68440 6.82282 6.93737 7.01870 7.26585 7.57603 7.77039 7.85841 7.88841 8.05184 8.51468 8.53209 9.35838 9.99789 10.50293 11.43809 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.002298 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.505260 B =12179.658762 C =12342.853529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.901 5.901 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.366 6.366 14 C 0.051 3.949 15 C 0.129 3.871 16 N -0.718 5.718 17 C 0.593 3.407 18 O -0.533 6.533 19 C -0.281 4.281 20 C 0.131 3.869 21 N -0.311 5.311 22 N -0.309 5.309 23 C 0.165 3.835 24 C -0.224 4.224 25 C 0.183 3.817 26 N -0.439 5.439 27 C 0.316 3.684 28 H 0.033 0.967 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.250 0.750 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.024 0.976 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.399 0.601 41 H 0.207 0.793 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 -24.452 4.572 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.546 5.546 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.285 6.285 14 C -0.027 4.027 15 C 0.005 3.995 16 N -0.370 5.370 17 C 0.380 3.620 18 O -0.410 6.410 19 C -0.298 4.298 20 C -0.050 4.050 21 N -0.133 5.133 22 N -0.077 5.077 23 C 0.029 3.971 24 C -0.247 4.247 25 C 0.000 4.000 26 N -0.149 5.149 27 C 0.085 3.915 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.223 0.777 42 H 0.200 0.800 43 H 0.189 0.811 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.155 -24.070 4.820 26.566 hybrid contribution 0.841 0.693 -0.255 1.119 sum -9.314 -23.377 4.565 25.575 Atomic orbital electron populations 1.20688 0.82143 0.94769 0.99399 1.43889 1.02140 1.00224 1.85637 1.19231 0.98132 0.85646 1.35586 0.91572 1.25042 0.97791 0.98372 0.98507 1.70112 1.18026 1.26713 1.39733 0.86238 0.78587 0.84694 0.77329 1.20448 1.21723 1.21850 1.20890 0.96348 0.88911 0.91401 1.23509 0.85135 0.96852 0.98215 1.88021 1.30350 1.87276 1.22848 1.22615 0.95672 0.98356 0.86053 1.21354 0.93341 0.89507 0.95255 1.45601 1.17322 1.34785 1.39334 1.16718 0.80860 0.81875 0.82532 1.90842 1.61962 1.57346 1.30881 1.19495 0.95066 1.07204 1.08002 1.24203 0.98779 0.89857 0.92181 1.77612 0.92263 1.25839 1.17574 1.47061 1.13227 1.22538 1.24894 1.22153 0.81943 0.94933 0.98070 1.21957 1.01281 1.02587 0.98918 1.23663 0.93440 0.88437 0.94482 1.68362 1.00417 1.27070 1.19097 1.20407 0.95054 0.87895 0.88193 0.94895 0.94486 0.98871 0.93944 0.92449 0.93860 0.93357 0.95760 0.92103 0.93850 0.90116 0.90583 0.76718 0.77699 0.79967 0.81134 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.60 8.61 59.85 0.52 5.12 16 2 N -0.60 -15.46 2.89 -181.12 -0.52 -15.99 16 3 C -0.26 -7.17 9.67 -15.06 -0.15 -7.32 16 4 H 0.07 1.80 7.85 -52.48 -0.41 1.38 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.90 -27.19 10.62 55.49 0.59 -26.60 16 7 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.15 3.15 6.12 -4.04 -0.02 3.13 16 12 C 0.04 0.79 6.28 37.16 0.23 1.02 16 13 O -0.37 -6.93 9.84 -35.23 -0.35 -7.27 16 14 C 0.05 0.76 6.07 37.16 0.23 0.98 16 15 C 0.13 1.96 6.06 -4.04 -0.02 1.93 16 16 N -0.72 -10.23 5.49 -61.65 -0.34 -10.57 16 17 C 0.59 9.74 7.78 -12.89 -0.10 9.64 16 18 O -0.53 -10.79 16.74 5.17 0.09 -10.70 16 19 C -0.28 -4.00 6.17 -104.65 -0.65 -4.64 16 20 C 0.13 1.46 11.44 -17.13 -0.20 1.27 16 21 N -0.31 -3.61 12.58 30.76 0.39 -3.23 16 22 N -0.31 -3.38 3.86 -11.97 -0.05 -3.42 16 23 C 0.17 1.03 11.29 -16.45 -0.19 0.84 16 24 C -0.22 -0.95 10.05 -39.82 -0.40 -1.35 16 25 C 0.18 1.30 11.28 -17.05 -0.19 1.11 16 26 N -0.44 -5.67 10.26 -12.00 -0.12 -5.80 16 27 C 0.32 4.32 7.74 -155.83 -1.21 3.12 16 28 H 0.03 0.95 7.43 -51.93 -0.39 0.57 16 29 H 0.04 1.04 7.20 -51.93 -0.37 0.67 16 30 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 31 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.04 0.83 7.87 -51.93 -0.41 0.42 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.40 4.68 7.39 -40.82 -0.30 4.38 16 41 H 0.21 1.51 7.46 -52.49 -0.39 1.12 16 42 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.17 -0.02 8.06 -52.49 -0.42 -0.44 16 44 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -39.65 379.26 -7.90 -47.55 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.04 Total: -1.76 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -2.24 Total: 14.79 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.05 Total: -65.60 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.26 Total: -17.98 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.65 -7.90 -47.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734281663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.882 kcal (2) G-P(sol) polarization free energy of solvation -39.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds