Wall clock time and date at job start Tue Mar 31 2020 17:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99502 * 2 1 4 4 H 1.08005 * 119.99518 * 202.70464 * 3 2 1 5 5 C 1.38810 * 120.00531 * 22.70694 * 3 2 1 6 6 N 1.31622 * 119.99639 * 11.51789 * 5 3 2 7 7 Si 1.86796 * 120.00156 * 191.51304 * 5 3 2 8 8 H 1.48496 * 109.47013 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46945 * 120.00015 * 7 5 3 10 10 H 1.48494 * 109.47208 * 239.99832 * 7 5 3 11 11 C 1.46497 * 120.00295 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46947 * 270.00025 * 11 2 1 13 13 O 1.42895 * 109.47376 * 64.99561 * 12 11 2 14 14 C 1.42903 * 114.00048 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46954 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47011 * 65.00160 * 15 14 13 17 17 C 1.34777 * 119.99854 * 179.97438 * 16 15 14 18 18 O 1.21721 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.46587 * 120.00008 * 180.02562 * 17 16 15 20 20 C 1.40643 * 126.53830 * 359.97435 * 19 17 16 21 21 N 1.30701 * 108.72518 * 180.02562 * 20 19 17 22 22 N 1.39911 * 109.51868 * 359.97438 * 21 20 19 23 23 C 1.36314 * 132.15718 * 180.29863 * 22 21 20 24 24 C 1.35758 * 119.15356 * 180.17717 * 23 22 21 25 25 C 1.39968 * 119.35163 * 359.49911 * 24 23 22 26 26 N 1.31495 * 120.11018 * 0.25226 * 25 24 23 27 27 C 1.33386 * 120.85460 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47237 * 273.91346 * 1 2 3 29 29 H 1.08992 * 109.47572 * 33.91230 * 1 2 3 30 30 H 1.09004 * 109.47189 * 153.91700 * 1 2 3 31 31 H 0.96998 * 119.99802 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47498 * 149.99727 * 11 2 1 33 33 H 1.09000 * 109.46885 * 29.99369 * 11 2 1 34 34 H 1.09007 * 109.47016 * 304.99556 * 12 11 2 35 35 H 1.09005 * 109.47014 * 185.00061 * 12 11 2 36 36 H 1.09000 * 109.46857 * 60.00187 * 14 13 12 37 37 H 1.08999 * 109.47360 * 300.00396 * 14 13 12 38 38 H 1.09001 * 109.46906 * 305.00159 * 15 14 13 39 39 H 1.08999 * 109.46996 * 185.00509 * 15 14 13 40 40 H 0.96991 * 120.00519 * 359.97438 * 16 15 14 41 41 H 1.07998 * 125.63678 * 0.02562 * 20 19 17 42 42 H 1.07997 * 120.42700 * 359.94796 * 23 22 21 43 43 H 1.08001 * 120.32386 * 179.77502 * 24 23 22 44 44 H 1.08001 * 119.94180 * 180.27698 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1669 1.2222 -0.3610 5 6 1.5362 2.3416 0.4640 6 7 0.3917 2.2653 1.1096 7 14 2.3351 4.0047 0.1724 8 1 3.6066 3.8193 -0.5720 9 1 1.4181 4.8620 -0.6209 10 1 2.6154 4.6549 1.4777 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 8 1.2061 -1.9943 2.0806 14 6 1.3326 -2.4189 3.4393 15 6 -0.0564 -2.6933 4.0192 16 7 -0.6649 -3.8245 3.3147 17 6 -1.8971 -4.2486 3.6587 18 8 -2.5042 -3.6920 4.5550 19 6 -2.5057 -5.3808 2.9542 20 6 -1.9316 -6.1206 1.9049 21 7 -2.7747 -7.0485 1.5354 22 7 -3.9327 -6.9657 2.3161 23 6 -5.0830 -7.6971 2.3271 24 6 -6.0605 -7.3790 3.2138 25 6 -5.8616 -6.3159 4.1022 26 7 -4.7391 -5.6315 4.0712 27 6 -3.7767 -5.9351 3.1989 28 1 -0.3634 0.0701 1.0253 29 1 -0.3634 0.8528 -0.5733 30 1 -0.3634 -0.9230 -0.4518 31 1 -0.0371 3.0728 1.4335 32 1 3.1499 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5146 34 1 2.9643 -0.9138 1.9812 35 1 3.0734 -2.6069 1.4427 36 1 1.8213 -1.6368 4.0203 37 1 1.9300 -3.3296 3.4813 38 1 -0.6825 -1.8095 3.8964 39 1 0.0329 -2.9309 5.0792 40 1 -0.1811 -4.2683 2.6008 41 1 -0.9554 -5.9502 1.4754 42 1 -5.2165 -8.5169 1.6368 43 1 -6.9809 -7.9436 3.2365 44 1 -6.6311 -6.0574 4.8146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734281663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:03 Heat of formation + Delta-G solvation = 42.089240 kcal Electronic energy + Delta-G solvation = -27868.458437 eV Core-core repulsion = 23823.434059 eV Total energy + Delta-G solvation = -4045.024378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.50074 -40.45431 -39.10782 -38.87593 -37.17738 -35.58683 -35.09433 -33.39391 -32.24988 -31.43899 -30.24130 -29.11540 -27.80312 -25.91334 -25.23712 -24.76482 -23.67038 -23.11113 -22.11105 -21.39289 -19.54875 -18.75781 -18.44581 -18.07478 -17.55423 -17.29921 -17.18328 -16.81591 -16.79459 -16.11497 -15.82557 -15.42092 -15.23428 -15.19001 -15.01197 -14.61088 -14.50567 -14.02862 -13.86885 -13.78309 -13.70806 -13.13133 -12.99732 -12.74927 -12.69492 -12.49946 -12.42381 -12.33206 -12.27812 -11.97659 -11.76249 -11.63868 -10.95846 -10.82301 -10.69288 -10.61436 -10.33681 -10.08564 -9.11723 -8.71473 -7.76321 -5.24709 -0.60429 -0.22209 0.89627 1.01261 1.46512 1.47522 1.58104 2.11903 2.27864 2.53702 2.59123 2.83208 2.90028 3.01233 3.36728 3.52200 3.79314 3.83297 3.91035 4.03630 4.09285 4.22562 4.32871 4.48690 4.50937 4.56756 4.58962 4.63411 4.69019 4.72546 4.93462 4.97368 4.99380 5.04075 5.10120 5.24545 5.38389 5.41470 5.49295 5.67876 5.84590 6.16739 6.37247 6.51428 6.58811 6.68859 7.20219 7.36663 7.94180 8.40003 9.26922 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.002298 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.505260 B =12179.658762 C =12342.853529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.196 3.804 2 N -0.613 5.613 3 C -0.258 4.258 4 H 0.076 0.924 5 C -0.060 4.060 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.262 1.262 9 H -0.295 1.295 10 H -0.295 1.295 11 C 0.144 3.856 12 C 0.051 3.949 13 O -0.394 6.394 14 C 0.056 3.944 15 C 0.135 3.865 16 N -0.707 5.707 17 C 0.591 3.409 18 O -0.587 6.587 19 C -0.331 4.331 20 C 0.143 3.857 21 N -0.327 5.327 22 N -0.312 5.312 23 C 0.151 3.849 24 C -0.196 4.196 25 C 0.187 3.813 26 N -0.504 5.504 27 C 0.304 3.696 28 H -0.002 1.002 29 H 0.007 0.993 30 H 0.019 0.981 31 H 0.243 0.757 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.412 0.588 41 H 0.235 0.765 42 H 0.223 0.777 43 H 0.227 0.773 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -27.476 3.534 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.337 5.337 3 C -0.388 4.388 4 H 0.094 0.906 5 C -0.254 4.254 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.186 1.186 9 H -0.222 1.222 10 H -0.223 1.223 11 C 0.018 3.982 12 C -0.028 4.028 13 O -0.313 6.313 14 C -0.021 4.021 15 C 0.011 3.989 16 N -0.359 5.359 17 C 0.380 3.620 18 O -0.468 6.468 19 C -0.347 4.347 20 C -0.038 4.038 21 N -0.148 5.148 22 N -0.080 5.080 23 C 0.016 3.984 24 C -0.219 4.219 25 C 0.008 3.992 26 N -0.217 5.217 27 C 0.070 3.930 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.249 0.751 41 H 0.251 0.749 42 H 0.239 0.761 43 H 0.244 0.756 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.142 -27.172 3.741 29.244 hybrid contribution 0.634 1.421 0.087 1.559 sum -9.508 -25.751 3.828 27.716 Atomic orbital electron populations 1.20302 0.83096 0.94627 0.96923 1.44117 1.01968 1.01752 1.85832 1.19626 0.98366 0.86632 1.34178 0.90614 1.25850 0.98583 1.01992 0.99023 1.70312 1.19740 1.26984 1.41485 0.85189 0.78143 0.80184 0.76856 1.18572 1.22217 1.22273 1.21162 0.96790 0.87021 0.93204 1.23263 0.85358 0.98039 0.96106 1.87979 1.30946 1.87711 1.24677 1.22691 0.95556 0.99764 0.84084 1.21213 0.93003 0.88409 0.96313 1.45468 1.16957 1.34133 1.39388 1.17134 0.80876 0.82070 0.81930 1.90787 1.63321 1.59322 1.33382 1.19403 0.96662 1.08287 1.10397 1.24574 0.99621 0.88743 0.90910 1.77514 0.92804 1.26244 1.18255 1.47292 1.14124 1.22419 1.24145 1.23186 0.80664 0.95346 0.99166 1.22587 1.02278 1.00865 0.96133 1.24525 0.92163 0.87800 0.94686 1.68384 1.02446 1.29990 1.20852 1.20551 0.95229 0.88525 0.88742 0.98409 0.97378 0.96295 0.94765 0.90829 0.92003 0.96122 0.90930 0.92692 0.89798 0.94324 0.89320 0.75109 0.74867 0.76064 0.75632 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.58 8.61 127.77 1.10 11.68 16 2 N -0.61 -31.76 2.89 -726.93 -2.10 -33.86 16 3 C -0.26 -14.41 9.67 84.03 0.81 -13.59 16 4 H 0.08 4.02 7.85 -2.91 -0.02 3.99 16 5 C -0.06 -3.48 5.12 84.86 0.43 -3.05 16 6 N -0.94 -58.71 10.62 21.65 0.23 -58.48 16 7 Si 0.97 46.56 29.57 68.60 2.03 48.59 16 8 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 9 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 10 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 11 C 0.14 5.68 6.12 86.38 0.53 6.20 16 12 C 0.05 1.81 6.28 71.98 0.45 2.26 16 13 O -0.39 -14.67 9.84 -148.98 -1.47 -16.13 16 14 C 0.06 1.64 6.07 71.98 0.44 2.08 16 15 C 0.13 4.28 6.06 86.38 0.52 4.80 16 16 N -0.71 -20.79 5.49 -467.15 -2.57 -23.36 16 17 C 0.59 20.65 7.78 86.42 0.67 21.33 16 18 O -0.59 -25.70 16.74 -4.41 -0.07 -25.77 16 19 C -0.33 -9.81 6.17 -19.89 -0.12 -9.93 16 20 C 0.14 3.16 11.44 85.45 0.98 4.14 16 21 N -0.33 -7.31 12.58 -56.58 -0.71 -8.02 16 22 N -0.31 -6.50 3.86 -191.79 -0.74 -7.24 16 23 C 0.15 1.41 11.29 83.42 0.94 2.35 16 24 C -0.20 -0.88 10.05 22.11 0.22 -0.66 16 25 C 0.19 2.28 11.28 85.16 0.96 3.24 16 26 N -0.50 -13.26 10.26 -191.87 -1.97 -15.23 16 27 C 0.30 8.50 7.74 133.98 1.04 9.53 16 28 H 0.00 -0.15 7.43 -2.39 -0.02 -0.17 16 29 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 30 H 0.02 0.89 7.85 -2.38 -0.02 0.87 16 31 H 0.24 14.88 8.31 -92.71 -0.77 14.10 16 32 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 33 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 34 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.41 9.50 7.39 -92.71 -0.69 8.82 16 41 H 0.24 3.18 7.46 -2.91 -0.02 3.15 16 42 H 0.22 0.14 8.06 -2.91 -0.02 0.11 16 43 H 0.23 -1.53 8.06 -2.91 -0.02 -1.55 16 44 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -93.66 379.26 1.95 -91.71 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.34 Total: 7.41 kcal Atomic # 6 Polarization: 31.40 SS G_CDS: 8.98 Total: 40.38 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -7.86 Total: -146.19 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.54 Total: -41.90 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -93.66 1.95 -91.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734281663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.799 kcal (2) G-P(sol) polarization free energy of solvation -93.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds