Wall clock time and date at job start Tue Mar 31 2020 17:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99997 * 2 1 4 4 H 1.08007 * 119.99622 * 203.83399 * 3 2 1 5 5 C 1.38808 * 119.99996 * 23.83617 * 3 2 1 6 6 N 1.31617 * 120.00325 * 9.41304 * 5 3 2 7 7 Si 1.86806 * 119.99815 * 189.41453 * 5 3 2 8 8 H 1.48498 * 109.47012 * 89.99604 * 7 5 3 9 9 H 1.48500 * 109.47195 * 209.99789 * 7 5 3 10 10 H 1.48499 * 109.46932 * 329.99728 * 7 5 3 11 11 C 1.46498 * 119.99845 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47665 * 270.00292 * 11 2 1 13 13 H 1.09005 * 109.47003 * 305.00585 * 12 11 2 14 14 O 1.42906 * 109.46966 * 64.99975 * 12 11 2 15 15 C 1.52995 * 109.47628 * 184.99926 * 12 11 2 16 16 N 1.46497 * 109.47458 * 180.02562 * 15 12 11 17 17 C 1.46503 * 120.00065 * 270.00102 * 16 15 12 18 18 C 1.34782 * 120.00155 * 90.00147 * 16 15 12 19 19 O 1.21588 * 119.99724 * 355.56977 * 18 16 15 20 20 C 1.47578 * 120.00171 * 175.57257 * 18 16 15 21 21 C 1.41531 * 120.56485 * 41.10601 * 20 18 16 22 22 N 1.30900 * 120.16526 * 180.02562 * 21 20 18 23 23 C 1.34262 * 121.27316 * 0.02562 * 22 21 20 24 24 N 1.32425 * 131.63312 * 179.97438 * 23 22 21 25 25 C 1.33705 * 109.32323 * 180.02562 * 24 23 22 26 26 C 1.34903 * 108.65441 * 0.02562 * 25 24 23 27 27 N 1.37010 * 107.06134 * 0.02562 * 26 25 24 28 28 C 1.35967 * 132.55242 * 180.33456 * 27 26 25 29 29 H 1.08998 * 109.47475 * 274.94320 * 1 2 3 30 30 H 1.09002 * 109.46886 * 34.94471 * 1 2 3 31 31 H 1.09002 * 109.47492 * 154.94121 * 1 2 3 32 32 H 0.97000 * 120.00276 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47034 * 150.00022 * 11 2 1 34 34 H 1.08998 * 109.47231 * 30.00524 * 11 2 1 35 35 H 0.96703 * 114.00135 * 59.99859 * 14 12 11 36 36 H 1.09005 * 109.47467 * 300.00375 * 15 12 11 37 37 H 1.09006 * 109.47032 * 59.99792 * 15 12 11 38 38 H 1.09005 * 109.46616 * 95.30013 * 17 16 15 39 39 H 1.08993 * 109.47265 * 215.30135 * 17 16 15 40 40 H 1.08994 * 109.47221 * 335.30265 * 17 16 15 41 41 H 1.08002 * 119.91599 * 359.97438 * 21 20 18 42 42 H 1.07998 * 125.66743 * 180.02562 * 25 24 23 43 43 H 1.08002 * 126.46828 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.57975 * 359.90834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1606 1.2257 -0.3780 5 6 1.5444 2.3368 0.4858 6 7 0.3904 2.2585 1.1139 7 14 2.3678 3.9966 0.2481 8 1 1.9128 4.5961 -1.0320 9 1 2.0036 4.8954 1.3727 10 1 3.8416 3.8178 0.2147 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 2.9641 -0.9124 1.9820 14 8 1.2059 -1.9928 2.0822 15 6 3.3236 -2.9676 1.4456 16 7 3.5673 -3.3903 2.8269 17 6 4.7315 -2.8795 3.5548 18 6 2.7203 -4.2493 3.4282 19 8 1.7114 -4.6105 2.8537 20 6 3.0174 -4.7512 4.7838 21 6 3.5341 -3.8835 5.7753 22 7 3.7953 -4.3372 6.9751 23 6 3.5834 -5.6238 7.2952 24 7 3.7709 -6.2922 8.4229 25 6 3.4087 -7.5672 8.2469 26 6 2.9792 -7.7225 6.9775 27 7 3.0854 -6.5015 6.3650 28 6 2.7939 -6.0753 5.1072 29 1 -0.3634 0.0885 1.0238 30 1 -0.3633 0.8424 -0.5886 31 1 -0.3634 -0.9309 -0.4353 32 1 -0.0323 3.0627 1.4537 33 1 3.1498 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 0.6953 -2.6943 1.6552 36 1 2.8120 -3.7651 0.9068 37 1 4.2745 -2.7518 0.9582 38 1 4.4370 -2.0158 4.1509 39 1 5.1203 -3.6583 4.2108 40 1 5.5035 -2.5843 2.8442 41 1 3.7141 -2.8447 5.5412 42 1 3.4528 -8.3435 8.9963 43 1 2.6196 -8.6367 6.5288 44 1 2.3966 -6.7607 4.3731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734543050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:45 Heat of formation + Delta-G solvation = 71.300511 kcal Electronic energy + Delta-G solvation = -28636.856569 eV Core-core repulsion = 24593.098886 eV Total energy + Delta-G solvation = -4043.757682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.39480 -40.38667 -38.26468 -37.18167 -35.60643 -34.92523 -34.53372 -31.83520 -31.26381 -29.74992 -29.47818 -27.25499 -26.18735 -25.70837 -24.94737 -23.93675 -22.31823 -21.97465 -20.52967 -20.03684 -19.02747 -18.10762 -16.98909 -16.92297 -16.68081 -16.44774 -15.99198 -15.86311 -14.96551 -14.74751 -14.55302 -14.44414 -14.34796 -14.10527 -13.70485 -13.64988 -13.30860 -13.06598 -12.90330 -12.73894 -12.29891 -12.22562 -11.73590 -11.55883 -11.10975 -10.99199 -10.87467 -10.70387 -10.53544 -10.39344 -10.27221 -9.99684 -9.99166 -9.90034 -9.64547 -9.50247 -8.68182 -8.57988 -8.43999 -6.66619 -5.68729 -3.17034 -0.02481 0.45993 1.81837 2.17233 2.65084 2.78738 3.15878 3.24120 3.37664 3.43295 3.45499 3.82496 3.92121 4.17340 4.37242 4.49603 4.70300 4.82743 4.85663 4.97886 5.05534 5.07549 5.18827 5.26940 5.44697 5.49534 5.50408 5.65541 5.68262 5.85156 5.98651 6.00968 6.07333 6.08297 6.37662 6.54071 6.79212 6.85502 7.09179 7.15664 7.45738 7.53164 7.78855 7.92044 7.93750 8.41943 8.46218 9.26187 9.89171 10.39134 11.34732 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.002520 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.228171 B =11109.813885 C =11565.994650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.592 5.592 3 C -0.260 4.260 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.126 3.874 12 C 0.070 3.930 13 H 0.097 0.903 14 O -0.541 6.541 15 C 0.082 3.918 16 N -0.595 5.595 17 C 0.068 3.932 18 C 0.579 3.421 19 O -0.521 6.521 20 C -0.210 4.210 21 C 0.196 3.804 22 N -0.436 5.436 23 C 0.384 3.616 24 N -0.472 5.472 25 C 0.050 3.950 26 C -0.095 4.095 27 N -0.401 5.401 28 C 0.172 3.828 29 H 0.037 0.963 30 H 0.038 0.962 31 H -0.008 1.008 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.362 0.638 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.193 0.807 42 H 0.191 0.809 43 H 0.190 0.810 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 -20.761 6.358 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.314 5.314 3 C -0.390 4.390 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.006 3.994 13 H 0.115 0.885 14 O -0.344 6.344 15 C -0.041 4.041 16 N -0.327 5.327 17 C -0.076 4.076 18 C 0.365 3.635 19 O -0.397 6.397 20 C -0.219 4.219 21 C 0.008 3.992 22 N -0.147 5.147 23 C 0.036 3.964 24 N -0.194 5.194 25 C -0.101 4.101 26 C -0.225 4.225 27 N -0.078 5.078 28 C 0.037 3.963 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.208 0.792 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.210 0.790 42 H 0.208 0.792 43 H 0.207 0.793 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.610 -19.658 8.081 22.932 hybrid contribution -0.320 -0.270 -1.655 1.708 sum 8.290 -19.928 6.426 22.520 Atomic orbital electron populations 1.20779 0.82229 0.94786 0.99740 1.43824 1.02026 1.00127 1.85395 1.19166 0.98891 0.85743 1.35164 0.91548 1.25104 0.97631 0.98580 0.98140 1.70081 1.17474 1.27189 1.39722 0.86283 0.78840 0.84272 0.77242 1.21532 1.21721 1.20548 1.21449 0.96452 0.89422 0.93029 1.23282 0.84424 0.93579 0.98127 0.88515 1.86637 1.32149 1.59341 1.56317 1.22605 1.01648 0.99384 0.80487 1.47581 1.25630 1.44625 1.14845 1.22164 0.88115 0.99318 0.97955 1.17310 0.83229 0.79262 0.83738 1.90793 1.24970 1.58970 1.65007 1.20722 1.08964 0.93865 0.98331 1.23873 0.88786 1.00904 0.85643 1.67896 1.18751 1.08399 1.19613 1.22220 1.00209 0.87797 0.86181 1.70745 1.23957 1.04757 1.19902 1.22690 0.98616 0.93693 0.95110 1.22760 1.15400 0.88505 0.95815 1.44008 1.41498 1.12000 1.10317 1.22428 0.92651 0.95894 0.85320 0.94514 0.94337 0.98947 0.93765 0.93252 0.94185 0.79188 0.89892 0.89619 0.91398 0.91401 0.89888 0.79018 0.79220 0.79283 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.24 8.60 59.85 0.51 4.75 16 2 N -0.59 -14.58 2.89 -181.12 -0.52 -15.10 16 3 C -0.26 -6.98 9.66 -15.06 -0.15 -7.12 16 4 H 0.07 1.72 7.84 -52.48 -0.41 1.31 16 5 C 0.00 0.12 5.17 -17.43 -0.09 0.03 16 6 N -0.90 -26.47 10.57 55.49 0.59 -25.89 16 7 Si 0.90 21.62 29.56 -169.99 -5.03 16.60 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.13 2.37 5.37 -4.04 -0.02 2.35 16 12 C 0.07 1.19 3.48 -26.73 -0.09 1.09 16 13 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 14 O -0.54 -10.54 11.61 -48.50 -0.56 -11.11 16 15 C 0.08 1.00 5.18 -4.05 -0.02 0.98 16 16 N -0.60 -6.69 2.83 -182.79 -0.52 -7.21 16 17 C 0.07 0.55 8.97 59.85 0.54 1.09 16 18 C 0.58 7.17 6.91 -12.45 -0.09 7.09 16 19 O -0.52 -7.90 15.06 -7.98 -0.12 -8.02 16 20 C -0.21 -2.23 5.15 -104.88 -0.54 -2.77 16 21 C 0.20 2.11 8.88 -16.69 -0.15 1.97 16 22 N -0.44 -5.73 10.45 -13.37 -0.14 -5.87 16 23 C 0.38 5.08 8.91 -322.24 -2.87 2.21 16 24 N -0.47 -6.28 11.31 -14.41 -0.16 -6.44 16 25 C 0.05 0.45 11.82 -17.92 -0.21 0.23 16 26 C -0.09 -0.74 11.76 -16.42 -0.19 -0.93 16 27 N -0.40 -4.13 2.94 -63.77 -0.19 -4.32 16 28 C 0.17 1.59 10.72 -15.76 -0.17 1.43 16 29 H 0.04 1.02 7.35 -51.93 -0.38 0.64 16 30 H 0.04 1.03 7.29 -51.93 -0.38 0.66 16 31 H -0.01 -0.18 7.84 -51.93 -0.41 -0.58 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 35 H 0.36 6.42 8.32 45.56 0.38 6.80 16 36 H 0.08 1.02 7.49 -51.93 -0.39 0.63 16 37 H 0.09 0.85 7.86 -51.93 -0.41 0.45 16 38 H 0.07 0.55 6.84 -51.93 -0.36 0.20 16 39 H 0.07 0.47 5.99 -51.93 -0.31 0.16 16 40 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 41 H 0.19 1.71 5.54 -52.49 -0.29 1.42 16 42 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -36.48 365.84 -9.69 -46.17 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.01 Total: 3.27 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -3.54 Total: 12.40 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.94 Total: -64.82 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.68 Total: -19.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.48 -9.69 -46.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734543050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.470 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds