Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99997 * 2 1 4 4 H 1.08007 * 119.99622 * 203.83399 * 3 2 1 5 5 C 1.38808 * 119.99996 * 23.83617 * 3 2 1 6 6 N 1.31617 * 120.00325 * 9.41304 * 5 3 2 7 7 Si 1.86806 * 119.99815 * 189.41453 * 5 3 2 8 8 H 1.48498 * 109.47012 * 89.99604 * 7 5 3 9 9 H 1.48500 * 109.47195 * 209.99789 * 7 5 3 10 10 H 1.48499 * 109.46932 * 329.99728 * 7 5 3 11 11 C 1.46498 * 119.99845 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47665 * 270.00292 * 11 2 1 13 13 H 1.09005 * 109.47003 * 305.00585 * 12 11 2 14 14 O 1.42906 * 109.46966 * 64.99975 * 12 11 2 15 15 C 1.52995 * 109.47628 * 184.99926 * 12 11 2 16 16 N 1.46497 * 109.47458 * 180.02562 * 15 12 11 17 17 C 1.46503 * 120.00065 * 270.00102 * 16 15 12 18 18 C 1.34782 * 120.00155 * 90.00147 * 16 15 12 19 19 O 1.21588 * 119.99724 * 355.56977 * 18 16 15 20 20 C 1.47578 * 120.00171 * 175.57257 * 18 16 15 21 21 C 1.41531 * 120.56485 * 41.10601 * 20 18 16 22 22 N 1.30900 * 120.16526 * 180.02562 * 21 20 18 23 23 C 1.34262 * 121.27316 * 0.02562 * 22 21 20 24 24 N 1.32425 * 131.63312 * 179.97438 * 23 22 21 25 25 C 1.33705 * 109.32323 * 180.02562 * 24 23 22 26 26 C 1.34903 * 108.65441 * 0.02562 * 25 24 23 27 27 N 1.37010 * 107.06134 * 0.02562 * 26 25 24 28 28 C 1.35967 * 132.55242 * 180.33456 * 27 26 25 29 29 H 1.08998 * 109.47475 * 274.94320 * 1 2 3 30 30 H 1.09002 * 109.46886 * 34.94471 * 1 2 3 31 31 H 1.09002 * 109.47492 * 154.94121 * 1 2 3 32 32 H 0.97000 * 120.00276 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47034 * 150.00022 * 11 2 1 34 34 H 1.08998 * 109.47231 * 30.00524 * 11 2 1 35 35 H 0.96703 * 114.00135 * 59.99859 * 14 12 11 36 36 H 1.09005 * 109.47467 * 300.00375 * 15 12 11 37 37 H 1.09006 * 109.47032 * 59.99792 * 15 12 11 38 38 H 1.09005 * 109.46616 * 95.30013 * 17 16 15 39 39 H 1.08993 * 109.47265 * 215.30135 * 17 16 15 40 40 H 1.08994 * 109.47221 * 335.30265 * 17 16 15 41 41 H 1.08002 * 119.91599 * 359.97438 * 21 20 18 42 42 H 1.07998 * 125.66743 * 180.02562 * 25 24 23 43 43 H 1.08002 * 126.46828 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.57975 * 359.90834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1606 1.2257 -0.3780 5 6 1.5444 2.3368 0.4858 6 7 0.3904 2.2585 1.1139 7 14 2.3678 3.9966 0.2481 8 1 1.9128 4.5961 -1.0320 9 1 2.0036 4.8954 1.3727 10 1 3.8416 3.8178 0.2147 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4432 13 1 2.9641 -0.9124 1.9820 14 8 1.2059 -1.9928 2.0822 15 6 3.3236 -2.9676 1.4456 16 7 3.5673 -3.3903 2.8269 17 6 4.7315 -2.8795 3.5548 18 6 2.7203 -4.2493 3.4282 19 8 1.7114 -4.6105 2.8537 20 6 3.0174 -4.7512 4.7838 21 6 3.5341 -3.8835 5.7753 22 7 3.7953 -4.3372 6.9751 23 6 3.5834 -5.6238 7.2952 24 7 3.7709 -6.2922 8.4229 25 6 3.4087 -7.5672 8.2469 26 6 2.9792 -7.7225 6.9775 27 7 3.0854 -6.5015 6.3650 28 6 2.7939 -6.0753 5.1072 29 1 -0.3634 0.0885 1.0238 30 1 -0.3633 0.8424 -0.5886 31 1 -0.3634 -0.9309 -0.4353 32 1 -0.0323 3.0627 1.4537 33 1 3.1498 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 0.6953 -2.6943 1.6552 36 1 2.8120 -3.7651 0.9068 37 1 4.2745 -2.7518 0.9582 38 1 4.4370 -2.0158 4.1509 39 1 5.1203 -3.6583 4.2108 40 1 5.5035 -2.5843 2.8442 41 1 3.7141 -2.8447 5.5412 42 1 3.4528 -8.3435 8.9963 43 1 2.6196 -8.6367 6.5288 44 1 2.3966 -6.7607 4.3731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734543050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = 47.111018 kcal Electronic energy + Delta-G solvation = -28637.905504 eV Core-core repulsion = 24593.098886 eV Total energy + Delta-G solvation = -4044.806617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.159 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -44.14781 -41.30978 -39.21256 -38.50503 -36.83649 -36.13244 -35.72127 -33.25631 -32.64073 -30.92334 -30.36713 -28.25199 -27.80632 -27.19958 -25.86900 -24.87704 -23.58237 -22.92314 -22.16503 -20.95176 -19.81842 -18.92784 -18.74817 -17.85016 -17.68184 -17.44517 -17.06069 -16.81801 -16.52148 -16.23957 -15.80312 -15.34442 -15.23256 -15.16157 -14.89473 -14.78562 -14.62617 -14.36376 -13.83459 -13.78678 -13.52125 -13.16214 -13.05845 -12.97806 -12.79006 -12.53780 -12.43063 -12.10518 -11.99849 -11.93019 -11.82507 -11.71220 -11.34701 -11.12824 -10.85616 -10.56926 -10.29809 -9.64670 -9.31211 -8.63381 -7.76595 -5.26231 -0.77200 -0.32552 1.08719 1.42270 1.48050 1.49140 1.57717 1.82073 1.93509 2.35380 2.46990 2.53819 3.04694 3.25272 3.35933 3.41386 3.66885 3.71661 3.81567 4.02451 4.19236 4.24073 4.26773 4.30109 4.37897 4.46097 4.56725 4.61200 4.65912 4.78536 4.87727 4.91058 4.95314 5.06090 5.28313 5.35870 5.38036 5.43824 5.47750 5.68080 5.84904 6.25869 6.31901 6.37763 6.77261 6.98985 7.08417 7.19957 7.93208 8.38095 9.26104 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.002520 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.228171 B =11109.813885 C =11565.994650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.611 5.611 3 C -0.258 4.258 4 H 0.078 0.922 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.288 1.288 9 H -0.301 1.301 10 H -0.262 1.262 11 C 0.121 3.879 12 C 0.079 3.921 13 H 0.067 0.933 14 O -0.565 6.565 15 C 0.095 3.905 16 N -0.595 5.595 17 C 0.062 3.938 18 C 0.581 3.419 19 O -0.553 6.553 20 C -0.222 4.222 21 C 0.198 3.802 22 N -0.468 5.468 23 C 0.350 3.650 24 N -0.512 5.512 25 C 0.035 3.965 26 C -0.074 4.074 27 N -0.405 5.405 28 C 0.187 3.813 29 H 0.001 0.999 30 H 0.008 0.992 31 H 0.024 0.976 32 H 0.244 0.756 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.369 0.631 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.202 0.798 42 H 0.224 0.776 43 H 0.236 0.764 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -23.216 5.505 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.096 0.904 5 C -0.253 4.253 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.228 1.228 10 H -0.187 1.187 11 C -0.006 4.006 12 C 0.016 3.984 13 H 0.085 0.915 14 O -0.370 6.370 15 C -0.028 4.028 16 N -0.325 5.325 17 C -0.080 4.080 18 C 0.367 3.633 19 O -0.432 6.432 20 C -0.231 4.231 21 C 0.011 3.989 22 N -0.180 5.180 23 C 0.002 3.998 24 N -0.235 5.235 25 C -0.114 4.114 26 C -0.203 4.203 27 N -0.082 5.082 28 C 0.053 3.947 29 H 0.019 0.981 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.215 0.785 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.219 0.781 42 H 0.240 0.760 43 H 0.252 0.748 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.332 -22.155 7.226 25.492 hybrid contribution -0.824 0.319 -1.371 1.632 sum 9.508 -21.836 5.855 24.525 Atomic orbital electron populations 1.20424 0.83140 0.94985 0.97261 1.44054 1.01946 1.01674 1.85685 1.19583 0.99075 0.86738 1.33453 0.90439 1.25887 0.98456 1.02116 0.98812 1.70282 1.19237 1.27327 1.41743 0.85263 0.78774 0.79967 0.76418 1.21549 1.22800 1.18659 1.21678 0.97008 0.87443 0.94517 1.23002 0.84336 0.95253 0.95816 0.91513 1.86610 1.33467 1.59874 1.57071 1.22352 1.02109 0.96838 0.81519 1.47617 1.26143 1.44115 1.14659 1.22361 0.87490 0.99622 0.98508 1.17501 0.82709 0.79059 0.84019 1.90772 1.26211 1.60261 1.65925 1.20536 1.10449 0.94681 0.97425 1.24004 0.88328 1.01351 0.85201 1.67842 1.20303 1.09233 1.20636 1.22295 1.02038 0.88386 0.87090 1.70676 1.25117 1.06863 1.20876 1.23388 0.98362 0.92934 0.96707 1.23598 1.12790 0.88720 0.95223 1.44149 1.41335 1.12457 1.10286 1.22843 0.90706 0.95911 0.85230 0.98051 0.97303 0.95802 0.94720 0.91307 0.92206 0.78454 0.89315 0.86461 0.91722 0.90039 0.87873 0.78129 0.75960 0.74785 0.76784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.52 8.60 127.77 1.10 10.62 16 2 N -0.61 -29.87 2.89 -726.95 -2.10 -31.96 16 3 C -0.26 -13.77 9.66 84.03 0.81 -12.96 16 4 H 0.08 3.88 7.84 -2.91 -0.02 3.86 16 5 C -0.06 -3.25 5.17 84.86 0.44 -2.81 16 6 N -0.94 -57.05 10.57 21.65 0.23 -56.82 16 7 Si 0.97 44.90 29.56 68.60 2.03 46.93 16 8 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 11 C 0.12 4.32 5.37 86.38 0.46 4.79 16 12 C 0.08 2.59 3.48 30.59 0.11 2.70 16 13 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 14 O -0.57 -21.99 11.61 -136.29 -1.58 -23.57 16 15 C 0.10 2.08 5.18 86.38 0.45 2.53 16 16 N -0.59 -12.24 2.83 -850.49 -2.40 -14.65 16 17 C 0.06 0.90 8.97 127.77 1.15 2.04 16 18 C 0.58 13.55 6.91 86.71 0.60 14.15 16 19 O -0.55 -16.05 15.06 8.69 0.13 -15.92 16 20 C -0.22 -4.45 5.15 -20.03 -0.10 -4.55 16 21 C 0.20 4.25 8.88 85.64 0.76 5.01 16 22 N -0.47 -12.50 10.45 -196.21 -2.05 -14.55 16 23 C 0.35 9.15 8.91 261.29 2.33 11.48 16 24 N -0.51 -13.45 11.31 -199.52 -2.26 -15.71 16 25 C 0.04 0.56 11.82 83.64 0.99 1.55 16 26 C -0.07 -0.92 11.76 83.12 0.98 0.06 16 27 N -0.40 -7.57 2.94 -355.67 -1.04 -8.61 16 28 C 0.19 3.08 10.72 84.03 0.90 3.98 16 29 H 0.00 0.07 7.35 -2.39 -0.02 0.05 16 30 H 0.01 0.46 7.29 -2.39 -0.02 0.44 16 31 H 0.02 1.03 7.84 -2.39 -0.02 1.01 16 32 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 34 H 0.06 1.92 7.86 -2.39 -0.02 1.90 16 35 H 0.37 12.93 8.32 -74.06 -0.62 12.32 16 36 H 0.09 1.92 7.49 -2.38 -0.02 1.90 16 37 H 0.12 1.87 7.86 -2.38 -0.02 1.85 16 38 H 0.06 1.00 6.84 -2.38 -0.02 0.98 16 39 H 0.08 0.98 5.99 -2.39 -0.01 0.97 16 40 H 0.10 1.09 7.83 -2.39 -0.02 1.07 16 41 H 0.20 3.62 5.54 -2.91 -0.02 3.60 16 42 H 0.22 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.24 0.52 8.06 -2.91 -0.02 0.50 16 44 H 0.22 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -82.72 365.84 2.34 -80.38 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.43 Total: 15.90 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 10.97 Total: 38.59 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -9.63 Total: -142.31 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.45 Total: -39.49 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -82.72 2.34 -80.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734543050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.489 kcal (2) G-P(sol) polarization free energy of solvation -82.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds