Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.50695 * 109.47014 * 270.02378 * 9 8 7 11 11 O 1.20826 * 120.00376 * 359.97438 * 10 9 8 12 12 O 1.34231 * 119.99904 * 180.02562 * 10 9 8 13 13 C 1.45203 * 116.99765 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46847 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99910 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00072 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99750 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46575 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00066 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99840 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99659 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46949 * 59.99912 * 22 20 18 24 24 H 1.48494 * 109.47096 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47060 * 300.00207 * 22 20 18 26 26 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 27 27 C 1.38231 * 120.00640 * 359.95396 * 26 8 7 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 36 36 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 37 37 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 38 38 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 39 39 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 40 40 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 41 41 H 1.08996 * 109.47051 * 299.99109 * 13 12 10 42 42 H 1.08993 * 109.47209 * 60.00288 * 13 12 10 43 43 H 0.96996 * 119.99642 * 359.97438 * 16 14 13 44 44 H 1.08996 * 109.46837 * 299.99712 * 17 16 14 45 45 H 1.08992 * 109.46991 * 60.00098 * 17 16 14 46 46 H 0.96999 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.08007 * 119.99539 * 179.97438 * 26 8 7 48 48 H 1.08000 * 120.00464 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3016 -1.8466 -2.2483 11 8 7.5202 -2.2265 -3.0880 12 8 9.6171 -2.0582 -2.4111 13 6 10.0291 -2.7481 -3.6205 14 6 11.5290 -2.8936 -3.6295 15 8 12.1861 -2.4583 -2.7077 16 7 12.1403 -3.5074 -4.6620 17 6 13.5985 -3.6493 -4.6704 18 6 14.0261 -4.3652 -5.9257 19 1 13.2859 -4.6823 -6.6454 20 6 15.3626 -4.6144 -6.1559 21 7 16.2639 -4.2278 -5.2798 22 14 15.8928 -5.5011 -7.7122 23 1 15.4643 -4.7175 -8.8987 24 1 17.3707 -5.6451 -7.7208 25 1 15.2646 -6.8460 -7.7541 26 6 5.5100 -2.0287 -0.5400 27 6 4.1324 -1.9293 -0.5949 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6054 -1.7198 -1.2951 36 1 1.7517 -0.1583 -2.1369 37 1 3.8680 1.0254 -2.2006 38 1 6.3219 0.8531 -2.0936 39 1 8.2338 -0.1377 -0.9719 40 1 8.0875 -1.6992 -0.1302 41 1 9.5678 -3.7351 -3.6508 42 1 9.7150 -2.1732 -4.4916 43 1 11.6148 -3.8558 -5.3990 44 1 14.0597 -2.6622 -4.6404 45 1 13.9126 -4.2239 -3.7991 46 1 17.2041 -4.4035 -5.4416 47 1 5.9713 -2.8880 -0.0760 48 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019419544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = -126.201536 kcal Electronic energy + Delta-G solvation = -26705.950430 eV Core-core repulsion = 22724.876008 eV Total energy + Delta-G solvation = -3981.074421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75262 -39.76891 -38.69176 -36.89568 -36.20439 -34.25436 -33.22583 -32.41654 -31.20619 -29.94383 -28.82743 -27.56813 -26.75061 -25.60921 -23.01096 -22.73365 -21.88193 -20.69334 -20.28810 -19.93944 -17.82342 -17.53769 -16.82461 -16.59957 -16.11926 -15.84339 -15.45892 -15.39994 -15.03408 -14.98313 -14.69835 -14.57134 -14.18775 -13.85269 -13.67099 -13.21612 -13.08153 -12.83191 -12.68048 -12.62666 -12.39937 -12.33146 -12.12128 -11.99205 -11.84501 -11.75491 -11.32347 -11.20282 -11.04094 -11.03670 -10.99225 -10.91149 -10.69099 -10.61269 -10.35250 -9.46424 -9.19117 -9.12559 -8.79867 -8.78567 -7.99739 -6.20149 -4.27731 0.98903 1.18817 2.12959 2.47721 3.17061 3.23862 3.28791 3.30211 3.50521 4.02258 4.26626 4.32999 4.39456 4.42983 4.54254 4.57441 4.76231 4.83414 4.85877 4.91327 5.15298 5.15742 5.16261 5.17936 5.21989 5.24321 5.24716 5.28485 5.33887 5.39620 5.43587 5.49498 5.54511 5.65129 5.80610 5.82398 5.87852 5.93152 6.15067 6.31425 6.35087 6.36806 6.75326 7.21660 7.29906 7.44946 7.58397 7.69734 7.91280 8.49092 8.70191 8.95469 9.38651 10.89941 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.001487 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.986080 B =18821.250093 C =19108.931565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.078 4.078 5 C -0.077 4.077 6 C -0.115 4.115 7 C -0.100 4.100 8 C -0.080 4.080 9 C -0.073 4.073 10 C 0.460 3.540 11 O -0.503 6.503 12 O -0.330 6.330 13 C 0.049 3.951 14 C 0.499 3.501 15 O -0.535 6.535 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.099 4.099 27 C -0.117 4.117 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.444 8.887 10.587 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.080 4.080 9 C -0.110 4.110 10 C 0.303 3.697 11 O -0.391 6.391 12 O -0.245 6.245 13 C -0.028 4.028 14 C 0.282 3.718 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.585 4.585 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.117 4.117 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.140 0.860 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -29.930 9.072 11.015 33.158 hybrid contribution 0.162 -0.778 -1.406 1.614 sum -29.768 8.295 9.609 32.362 Atomic orbital electron populations 1.21857 0.95091 1.01752 1.01844 1.21081 0.95425 0.96565 0.97874 1.21928 1.01736 0.95650 1.01536 1.20700 0.91030 1.01291 0.98464 1.19862 0.95541 0.94488 0.97768 1.20972 0.93298 0.98763 1.00262 1.21001 0.94974 0.97650 0.98142 1.19256 0.93092 0.95609 1.00019 1.20295 0.92597 1.03055 0.95084 1.23652 0.80552 0.77338 0.88192 1.90689 1.56754 1.47875 1.43741 1.86564 1.25468 1.70105 1.42358 1.22852 0.95005 0.98593 0.86375 1.19904 0.87962 0.80050 0.83866 1.90708 1.66261 1.48580 1.35644 1.46369 1.11250 1.56926 1.21129 1.19174 0.72419 0.97585 0.97717 1.21176 0.92820 1.39240 1.05243 0.91820 1.24946 0.96265 0.95539 0.97167 1.69961 1.01674 1.45460 1.35089 0.86447 0.77588 0.80011 0.82710 1.20033 1.21024 1.20037 1.20990 0.93738 0.97769 0.99174 1.20961 0.94501 0.97881 1.00181 0.92639 0.92676 0.92634 0.91097 0.92894 0.92037 0.92763 0.90982 0.90966 0.86075 0.86025 0.86519 0.86520 0.88575 0.88582 0.77435 0.95246 0.95244 0.92310 0.86023 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.19 37.16 0.34 -0.35 16 2 C -0.09 -0.51 2.91 -90.62 -0.26 -0.77 16 3 C -0.15 -0.85 8.78 37.16 0.33 -0.52 16 4 C -0.08 -0.48 4.84 -27.89 -0.13 -0.62 16 5 C -0.08 -0.62 4.70 -104.62 -0.49 -1.12 16 6 C -0.11 -0.97 7.98 -39.58 -0.32 -1.29 16 7 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 8 C -0.08 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.07 -0.68 5.94 -29.03 -0.17 -0.85 16 10 C 0.46 6.10 7.95 36.00 0.29 6.38 16 11 O -0.50 -7.75 15.78 -18.75 -0.30 -8.05 16 12 O -0.33 -5.13 9.76 -45.91 -0.45 -5.58 16 13 C 0.05 0.75 5.94 36.01 0.21 0.97 16 14 C 0.50 10.02 7.91 -10.98 -0.09 9.93 16 15 O -0.53 -13.04 16.50 -14.11 -0.23 -13.27 16 16 N -0.71 -14.63 5.55 -61.47 -0.34 -14.97 16 17 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 18 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 22 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.10 -0.92 9.70 -39.59 -0.38 -1.30 16 27 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.39 6.28 -51.93 -0.33 0.07 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.12 0.83 8.05 -52.49 -0.42 0.40 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 42 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 408.00 15.07 6.15 6.15 Total: -1.00 -33.98 408.00 -9.60 -43.58 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.80 Total: 1.78 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.35 Total: -0.20 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.40 Total: -40.03 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.98 Total: -26.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.98 -9.60 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019419544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.621 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds