Wall clock time and date at job start Tue Mar 31 2020 18:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.52994 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46991 * 180.02562 * 4 3 2 6 6 C 1.38240 * 120.00199 * 89.99859 * 5 4 3 7 7 C 1.38231 * 120.00067 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99975 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99845 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47325 * 90.00059 * 9 8 7 11 11 O 1.20822 * 119.99854 * 359.72134 * 10 9 8 12 12 O 1.34234 * 119.99997 * 179.97438 * 10 9 8 13 13 C 1.45199 * 116.99947 * 179.72219 * 12 10 9 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00261 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00280 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47243 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00341 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99639 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00394 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 89.99654 * 22 20 18 24 24 H 1.48493 * 109.47446 * 209.99841 * 22 20 18 25 25 H 1.48503 * 109.46984 * 329.99700 * 22 20 18 26 26 C 1.38234 * 120.00145 * 0.25257 * 8 7 6 27 27 C 1.38233 * 119.99829 * 359.49014 * 26 8 7 28 28 H 1.08998 * 109.47867 * 59.99092 * 1 2 3 29 29 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46873 * 299.99350 * 1 2 3 31 31 H 1.09007 * 109.46873 * 240.00649 * 2 1 3 32 32 H 1.08993 * 109.47477 * 120.00671 * 2 1 3 33 33 H 1.09007 * 109.46779 * 60.00592 * 3 2 1 34 34 H 1.09001 * 109.47400 * 300.00347 * 3 2 1 35 35 H 1.08998 * 109.47353 * 60.00174 * 4 3 2 36 36 H 1.08998 * 109.47324 * 299.99772 * 4 3 2 37 37 H 1.08000 * 119.99715 * 0.02562 * 6 5 4 38 38 H 1.07996 * 120.00086 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47588 * 329.99553 * 9 8 7 40 40 H 1.09001 * 109.46875 * 209.99736 * 9 8 7 41 41 H 1.08997 * 109.46967 * 299.99772 * 13 12 10 42 42 H 1.09002 * 109.46640 * 59.99976 * 13 12 10 43 43 H 0.97000 * 119.99896 * 0.02562 * 16 14 13 44 44 H 1.09002 * 109.47252 * 300.00697 * 17 16 14 45 45 H 1.09002 * 109.47061 * 60.00867 * 17 16 14 46 46 H 0.97003 * 119.99929 * 179.97438 * 21 20 18 47 47 H 1.07995 * 120.00197 * 179.72829 * 26 8 7 48 48 H 1.07998 * 120.00407 * 180.25482 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0722 2.8634 0.0000 6 6 4.3030 3.5144 1.1974 7 6 4.7643 4.8175 1.1980 8 6 4.9942 5.4698 0.0011 9 6 5.4965 6.8906 0.0017 10 6 7.0035 6.8907 0.0011 11 8 7.6076 5.8444 0.0053 12 8 7.6746 8.0532 0.0010 13 6 9.1246 7.9773 0.0067 14 6 9.7005 9.3699 0.0050 15 8 8.9616 10.3317 0.0001 16 7 11.0366 9.5466 0.0101 17 6 11.5965 10.9004 0.0080 18 6 13.1014 10.8216 0.0140 19 1 13.5918 9.8593 0.0185 20 6 13.8523 11.9780 0.0137 21 7 13.2552 13.1497 0.0077 22 14 15.7177 11.8804 0.0204 23 1 16.2169 11.8509 -1.3778 24 1 16.2730 13.0670 0.7194 25 1 16.1462 10.6454 0.7251 26 6 4.7579 4.8208 -1.1963 27 6 4.3017 3.5159 -1.1969 28 1 -0.3635 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9336 0.9286 0.8891 37 1 4.1238 3.0045 2.1325 38 1 4.9450 5.3259 2.1335 39 1 5.1335 7.4040 0.8921 40 1 5.1328 7.4049 -0.8878 41 1 9.4572 7.4473 0.8991 42 1 9.4639 7.4431 -0.8808 43 1 11.6275 8.7774 0.0144 44 1 11.2642 11.4296 -0.8851 45 1 11.2569 11.4354 0.8948 46 1 13.7835 13.9633 0.0079 47 1 4.9333 5.3319 -2.1314 48 1 4.1209 3.0074 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021481147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:52 Heat of formation + Delta-G solvation = -129.789991 kcal Electronic energy + Delta-G solvation = -26345.124959 eV Core-core repulsion = 22363.894930 eV Total energy + Delta-G solvation = -3981.230028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74318 -39.66437 -38.67576 -36.59921 -36.09456 -34.25500 -33.63259 -32.41897 -31.18491 -30.83124 -29.22141 -27.51253 -26.46822 -24.15084 -23.01905 -22.66926 -21.75205 -21.32669 -20.49911 -19.93910 -17.82457 -17.53841 -16.83821 -16.51681 -16.17613 -16.00299 -15.44590 -15.36682 -15.36035 -15.00130 -14.61160 -14.49864 -14.18755 -13.70309 -13.62380 -13.46882 -13.15295 -13.08473 -12.92253 -12.58224 -12.31645 -12.29901 -11.99941 -11.86145 -11.77014 -11.69984 -11.55583 -11.23440 -11.02444 -11.00118 -10.95391 -10.92743 -10.69227 -10.61647 -10.35225 -9.45006 -9.19187 -9.14437 -8.81384 -8.79056 -7.99748 -6.20454 -4.27879 0.98190 1.18304 2.12805 2.47528 3.17047 3.22640 3.28923 3.31259 3.50173 4.02205 4.24147 4.32758 4.38626 4.41675 4.56026 4.62482 4.75804 4.80046 4.81209 4.83478 5.03380 5.15595 5.15783 5.18034 5.23107 5.23728 5.25626 5.26920 5.31082 5.33886 5.38098 5.47676 5.55431 5.69346 5.76150 5.76330 5.85112 5.91324 6.14155 6.30803 6.34930 6.35785 6.74740 7.21632 7.29971 7.44816 7.58508 7.69614 7.91093 8.49112 8.70246 8.95520 9.38586 10.89715 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.001407 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.901804 B =19893.563595 C =20211.164140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.082 4.082 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.099 4.099 8 C -0.080 4.080 9 C -0.073 4.073 10 C 0.460 3.540 11 O -0.503 6.503 12 O -0.330 6.330 13 C 0.049 3.951 14 C 0.499 3.501 15 O -0.534 6.534 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.099 4.099 27 C -0.117 4.117 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 -24.733 -0.007 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.117 4.117 8 C -0.080 4.080 9 C -0.110 4.110 10 C 0.303 3.697 11 O -0.391 6.391 12 O -0.245 6.245 13 C -0.028 4.028 14 C 0.282 3.718 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.117 4.117 27 C -0.135 4.135 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.140 0.860 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.602 -24.095 -0.005 33.729 hybrid contribution 1.570 -0.365 -0.005 1.612 sum -22.032 -24.460 -0.010 32.920 Atomic orbital electron populations 1.21777 0.95849 1.01580 1.01883 1.21552 0.95916 0.96794 1.02055 1.21608 0.94267 0.96771 1.02500 1.20632 0.95652 0.92635 1.02969 1.19897 0.98734 0.96101 0.93221 1.20966 1.00256 0.94686 0.97579 1.20998 0.98409 0.94883 0.97366 1.19261 1.00433 0.94388 0.93893 1.20297 0.87754 0.95846 1.07134 1.23650 0.91521 0.81764 0.72794 1.90688 1.70358 1.33010 1.45008 1.86564 1.20633 1.33828 1.83465 1.22852 0.77686 0.97765 1.04523 1.19901 0.83762 0.89365 0.78751 1.90708 1.59082 1.41808 1.49592 1.46366 1.04565 1.12314 1.72420 1.19177 0.92980 0.76738 0.98032 1.21210 0.90388 0.93253 1.53531 0.91774 1.24947 0.99379 0.95022 0.94585 1.69973 1.36017 0.97524 1.48684 0.86392 0.84337 0.77796 0.78262 1.20422 1.20959 1.19714 1.20999 0.98449 0.94882 0.97353 1.20967 1.00282 0.94649 0.97585 0.92732 0.92808 0.92740 0.92006 0.92004 0.91797 0.91801 0.90996 0.91005 0.86070 0.85986 0.86493 0.86511 0.88573 0.88582 0.77430 0.95258 0.95237 0.92367 0.85982 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.33 16 2 C -0.13 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.11 -0.62 5.20 -26.73 -0.14 -0.76 16 4 C -0.08 -0.50 5.34 -27.89 -0.15 -0.65 16 5 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 6 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 7 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 8 C -0.08 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.07 -0.68 5.94 -29.03 -0.17 -0.85 16 10 C 0.46 6.10 7.95 36.01 0.29 6.39 16 11 O -0.50 -7.76 15.78 -18.75 -0.30 -8.06 16 12 O -0.33 -5.13 9.76 -45.92 -0.45 -5.58 16 13 C 0.05 0.75 5.94 36.00 0.21 0.97 16 14 C 0.50 10.01 7.91 -10.99 -0.09 9.92 16 15 O -0.53 -13.03 16.50 -14.11 -0.23 -13.27 16 16 N -0.71 -14.61 5.55 -61.48 -0.34 -14.95 16 17 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 18 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.80 13.29 55.43 0.74 -25.07 16 22 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 27 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.12 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 42 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 412.69 15.07 6.22 6.22 Total: -1.00 -34.08 412.69 -10.09 -44.17 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.89 Total: 1.54 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.81 Total: -0.63 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.40 Total: -40.02 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.98 Total: -26.91 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.08 -10.09 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021481147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.624 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds