Wall clock time and date at job start Tue Mar 31 2020 18:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.52994 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46991 * 180.02562 * 4 3 2 6 6 C 1.38240 * 120.00199 * 89.99859 * 5 4 3 7 7 C 1.38231 * 120.00067 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99975 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99845 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47325 * 90.00059 * 9 8 7 11 11 O 1.20822 * 119.99854 * 359.72134 * 10 9 8 12 12 O 1.34234 * 119.99997 * 179.97438 * 10 9 8 13 13 C 1.45199 * 116.99947 * 179.72219 * 12 10 9 14 14 C 1.50697 * 109.46937 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00261 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00280 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47243 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99979 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00341 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99639 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00394 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 89.99654 * 22 20 18 24 24 H 1.48493 * 109.47446 * 209.99841 * 22 20 18 25 25 H 1.48503 * 109.46984 * 329.99700 * 22 20 18 26 26 C 1.38234 * 120.00145 * 0.25257 * 8 7 6 27 27 C 1.38233 * 119.99829 * 359.49014 * 26 8 7 28 28 H 1.08998 * 109.47867 * 59.99092 * 1 2 3 29 29 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46873 * 299.99350 * 1 2 3 31 31 H 1.09007 * 109.46873 * 240.00649 * 2 1 3 32 32 H 1.08993 * 109.47477 * 120.00671 * 2 1 3 33 33 H 1.09007 * 109.46779 * 60.00592 * 3 2 1 34 34 H 1.09001 * 109.47400 * 300.00347 * 3 2 1 35 35 H 1.08998 * 109.47353 * 60.00174 * 4 3 2 36 36 H 1.08998 * 109.47324 * 299.99772 * 4 3 2 37 37 H 1.08000 * 119.99715 * 0.02562 * 6 5 4 38 38 H 1.07996 * 120.00086 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47588 * 329.99553 * 9 8 7 40 40 H 1.09001 * 109.46875 * 209.99736 * 9 8 7 41 41 H 1.08997 * 109.46967 * 299.99772 * 13 12 10 42 42 H 1.09002 * 109.46640 * 59.99976 * 13 12 10 43 43 H 0.97000 * 119.99896 * 0.02562 * 16 14 13 44 44 H 1.09002 * 109.47252 * 300.00697 * 17 16 14 45 45 H 1.09002 * 109.47061 * 60.00867 * 17 16 14 46 46 H 0.97003 * 119.99929 * 179.97438 * 21 20 18 47 47 H 1.07995 * 120.00197 * 179.72829 * 26 8 7 48 48 H 1.07998 * 120.00407 * 180.25482 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0722 2.8634 0.0000 6 6 4.3030 3.5144 1.1974 7 6 4.7643 4.8175 1.1980 8 6 4.9942 5.4698 0.0011 9 6 5.4965 6.8906 0.0017 10 6 7.0035 6.8907 0.0011 11 8 7.6076 5.8444 0.0053 12 8 7.6746 8.0532 0.0010 13 6 9.1246 7.9773 0.0067 14 6 9.7005 9.3699 0.0050 15 8 8.9616 10.3317 0.0001 16 7 11.0366 9.5466 0.0101 17 6 11.5965 10.9004 0.0080 18 6 13.1014 10.8216 0.0140 19 1 13.5918 9.8593 0.0185 20 6 13.8523 11.9780 0.0137 21 7 13.2552 13.1497 0.0077 22 14 15.7177 11.8804 0.0204 23 1 16.2169 11.8509 -1.3778 24 1 16.2730 13.0670 0.7194 25 1 16.1462 10.6454 0.7251 26 6 4.7579 4.8208 -1.1963 27 6 4.3017 3.5159 -1.1969 28 1 -0.3635 0.5139 -0.8898 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9336 0.9286 0.8891 37 1 4.1238 3.0045 2.1325 38 1 4.9450 5.3259 2.1335 39 1 5.1335 7.4040 0.8921 40 1 5.1328 7.4049 -0.8878 41 1 9.4572 7.4473 0.8991 42 1 9.4639 7.4431 -0.8808 43 1 11.6275 8.7774 0.0144 44 1 11.2642 11.4296 -0.8851 45 1 11.2569 11.4354 0.8948 46 1 13.7835 13.9633 0.0079 47 1 4.9333 5.3319 -2.1314 48 1 4.1209 3.0074 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021481147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:51 Heat of formation + Delta-G solvation = -148.121901 kcal Electronic energy + Delta-G solvation = -26345.919890 eV Core-core repulsion = 22363.894930 eV Total energy + Delta-G solvation = -3982.024960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81726 -40.59252 -40.10841 -37.62873 -36.73422 -36.18527 -34.42491 -34.24120 -31.82320 -31.55258 -30.62421 -28.73327 -27.72502 -24.91579 -24.42433 -23.66157 -22.52376 -21.89420 -21.64780 -21.24947 -19.25470 -18.85975 -17.93654 -17.90543 -17.08604 -17.06552 -16.80544 -16.64997 -16.24636 -16.01846 -15.78814 -15.75241 -14.92160 -14.68234 -14.60444 -14.29994 -14.19697 -14.07301 -13.88276 -13.75361 -13.66013 -13.49830 -13.02422 -12.95987 -12.94144 -12.72062 -12.40275 -12.23418 -12.17607 -11.98373 -11.90203 -11.78356 -11.69574 -11.50300 -11.49569 -11.37791 -10.91825 -10.82047 -9.93618 -9.80194 -9.46931 -8.29945 -6.46540 0.29354 0.52520 1.10647 1.34989 1.45105 1.46026 1.54629 1.57657 2.34057 2.56122 2.89346 3.05488 3.56768 3.66676 3.81865 3.85726 3.92134 4.04034 4.08429 4.08889 4.13218 4.21507 4.27827 4.37815 4.52923 4.53859 4.61888 4.75676 4.79928 4.84675 4.97911 4.98287 5.06320 5.11796 5.19303 5.19388 5.21473 5.30439 5.32577 5.39963 5.41466 5.49863 5.51575 5.62571 5.63672 5.74639 5.81744 6.11710 6.59722 6.63049 6.78266 7.20010 7.35036 8.82226 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.001407 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.901804 B =19893.563595 C =20211.164140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.079 4.079 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.112 4.112 8 C -0.095 4.095 9 C -0.068 4.068 10 C 0.464 3.536 11 O -0.526 6.526 12 O -0.348 6.348 13 C 0.061 3.939 14 C 0.499 3.501 15 O -0.583 6.583 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.558 4.558 19 H 0.085 0.915 20 C 0.006 3.994 21 N -0.930 5.930 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 C -0.112 4.112 27 C -0.127 4.127 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.269 0.731 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.908 -27.116 0.006 35.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.116 4.116 5 C -0.084 4.084 6 C -0.145 4.145 7 C -0.130 4.130 8 C -0.096 4.096 9 C -0.105 4.105 10 C 0.308 3.692 11 O -0.414 6.414 12 O -0.264 6.264 13 C -0.016 4.016 14 C 0.285 3.715 15 O -0.463 6.463 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.595 4.595 19 H 0.103 0.897 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.807 3.193 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C -0.130 4.130 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.078 0.922 47 H 0.149 0.851 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.180 -26.539 0.008 35.237 hybrid contribution 1.332 0.337 -0.011 1.374 sum -21.849 -26.202 -0.003 34.117 Atomic orbital electron populations 1.21786 0.95737 1.01873 1.01791 1.21538 0.96005 0.96257 1.02344 1.21550 0.93747 0.97213 1.02114 1.20646 0.95986 0.91455 1.03489 1.20183 0.98114 0.97022 0.93065 1.21228 1.00107 0.94671 0.98467 1.21236 0.98587 0.95399 0.97741 1.19384 1.01206 0.94687 0.94276 1.20435 0.84795 0.96287 1.08953 1.24348 0.92634 0.80636 0.71554 1.90674 1.71027 1.33511 1.46235 1.86572 1.20526 1.35406 1.83898 1.22694 0.78122 0.93897 1.06876 1.20701 0.82980 0.91041 0.76766 1.90684 1.60100 1.44085 1.51476 1.46048 1.05505 1.10960 1.72511 1.18635 0.93475 0.78902 0.94626 1.21610 0.90505 0.94327 1.53102 0.89656 1.26031 1.05092 0.94459 0.93790 1.70130 1.38338 0.98537 1.49831 0.85163 0.77270 0.78249 0.78585 1.19644 1.20968 1.17959 1.21238 0.98613 0.95397 0.97729 1.21230 1.00133 0.94637 0.98473 0.92836 0.92341 0.92846 0.91714 0.91714 0.92186 0.92187 0.90469 0.90482 0.84623 0.85115 0.84600 0.84617 0.86083 0.86097 0.75169 0.98935 0.98910 0.92190 0.85094 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.11 -1.05 5.20 30.59 0.16 -0.89 16 4 C -0.08 -0.85 5.34 29.85 0.16 -0.69 16 5 C -0.08 -1.28 5.13 -19.86 -0.10 -1.39 16 6 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 7 C -0.11 -1.97 9.70 22.27 0.22 -1.76 16 8 C -0.10 -1.76 4.37 -19.87 -0.09 -1.85 16 9 C -0.07 -1.16 5.94 29.10 0.17 -0.99 16 10 C 0.46 11.63 7.95 71.24 0.57 12.20 16 11 O -0.53 -15.42 15.78 21.98 0.35 -15.07 16 12 O -0.35 -10.43 9.76 -45.10 -0.44 -10.87 16 13 C 0.06 1.77 5.94 71.23 0.42 2.19 16 14 C 0.50 20.04 7.91 87.66 0.69 20.73 16 15 O -0.58 -29.25 16.50 15.76 0.26 -28.99 16 16 N -0.70 -28.90 5.55 -466.80 -2.59 -31.49 16 17 C 0.27 14.36 5.43 85.63 0.46 14.83 16 18 C -0.56 -29.82 9.28 25.60 0.24 -29.59 16 19 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 20 C 0.01 0.34 5.46 84.66 0.46 0.80 16 21 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 22 Si 0.98 41.80 29.54 68.60 2.03 43.82 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 26 C -0.11 -1.97 9.70 22.27 0.22 -1.76 16 27 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 36 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.14 1.80 8.09 -2.39 -0.02 1.78 16 40 H 0.14 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 42 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 43 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -75.22 412.69 4.97 -70.25 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.17 Total: 20.64 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.91 Total: 6.87 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.30 Total: -86.66 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: 0.17 Total: -54.92 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.22 4.97 -70.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021481147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.875 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds