Wall clock time and date at job start Tue Mar 31 2020 18:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47038 * 179.97438 * 12 11 9 14 14 O 1.20816 * 120.00256 * 0.02562 * 13 12 11 15 15 O 1.34234 * 119.99593 * 180.02562 * 13 12 11 16 16 C 1.45202 * 116.99627 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47313 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00375 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47427 * 60.00530 * 22 20 18 24 24 H 1.48500 * 109.46914 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47229 * 300.00089 * 22 20 18 26 26 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 27 27 C 1.37955 * 119.85778 * 359.73229 * 26 8 7 28 28 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 29 29 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 33 33 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 34 34 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 35 35 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 36 36 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 38 38 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 39 39 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 41 41 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 42 42 H 1.09000 * 109.47103 * 299.99797 * 16 15 13 43 43 H 1.09000 * 109.47348 * 59.99153 * 16 15 13 44 44 H 1.09008 * 109.46850 * 299.99629 * 17 16 15 45 45 H 1.08999 * 109.47175 * 59.99170 * 17 16 15 46 46 H 0.96991 * 120.00084 * 179.97438 * 21 20 18 47 47 H 1.08003 * 120.06670 * 179.70533 * 26 8 7 48 48 H 1.07997 * 119.92668 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1079 -6.1145 6.1083 14 8 2.4140 -6.5099 5.2017 15 8 3.4315 -6.9408 7.1154 16 6 2.9130 -8.2954 7.0492 17 6 3.3842 -9.0824 8.2738 18 6 2.8455 -10.4881 8.2054 19 1 2.2284 -10.7899 7.3720 20 6 3.1404 -11.3890 9.2066 21 7 3.8915 -11.0212 10.2217 22 14 2.4721 -13.1312 9.1221 23 1 2.9672 -13.7920 7.8879 24 1 2.9295 -13.8950 10.3106 25 1 0.9878 -13.0915 9.1010 26 6 3.2901 -0.6794 3.2679 27 6 2.8273 -0.0350 2.1394 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1392 36 1 3.1301 -0.7207 -1.2495 37 1 1.0749 -2.5565 0.7331 38 1 1.8822 -3.7227 2.7426 39 1 2.5649 -4.4747 4.2732 40 1 4.7001 -4.6931 6.1090 41 1 3.2460 -4.1800 6.9983 42 1 1.8235 -8.2670 7.0323 43 1 3.2778 -8.7803 6.1437 44 1 4.4738 -9.1108 8.2902 45 1 3.0197 -8.5976 9.1794 46 1 4.0987 -11.6548 10.9262 47 1 3.9099 -0.1509 3.9772 48 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023076128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:55 Heat of formation + Delta-G solvation = -120.368373 kcal Electronic energy + Delta-G solvation = -26945.035769 eV Core-core repulsion = 22964.214293 eV Total energy + Delta-G solvation = -3980.821476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.81911 -40.19324 -39.24574 -36.60129 -36.41427 -34.73008 -33.40846 -31.59452 -30.98141 -30.39058 -28.29222 -27.77668 -27.71967 -25.08603 -24.15864 -22.64255 -21.48712 -21.00533 -20.67597 -19.61264 -18.75026 -17.30319 -16.53855 -16.51453 -16.43708 -16.03526 -15.54952 -15.30397 -15.10516 -15.03947 -14.74206 -14.53399 -14.16305 -13.96103 -13.83126 -13.75127 -13.14909 -13.02656 -12.71951 -12.64943 -12.39720 -12.37638 -12.36026 -12.15473 -11.84051 -11.43060 -11.32481 -11.23693 -11.13103 -10.94666 -10.81211 -10.79258 -10.45824 -10.26511 -9.76529 -9.70475 -9.47743 -9.36716 -9.34206 -9.06903 -8.47958 -6.13879 -4.19006 0.49969 1.02376 2.29280 2.47815 2.56893 3.26797 3.27560 3.32178 3.36106 3.52516 4.04117 4.21917 4.34870 4.43999 4.49883 4.55650 4.65062 4.77429 4.93979 4.98426 5.04034 5.14994 5.16208 5.21290 5.22585 5.25426 5.28328 5.37109 5.40459 5.42826 5.52664 5.62865 5.63153 5.74971 5.81659 5.92571 5.96188 5.99049 6.02619 6.04562 6.19244 6.51447 6.54265 6.78918 7.19976 7.48540 7.56213 7.78527 7.89772 7.99876 8.18297 8.86106 9.45634 10.97442 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.001613 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.700261 B =17355.607116 C =18195.336009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.045 4.045 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.138 4.138 9 C 0.563 3.437 10 O -0.535 6.535 11 N -0.718 5.718 12 C 0.124 3.876 13 C 0.454 3.546 14 O -0.518 6.518 15 O -0.349 6.349 16 C 0.076 3.924 17 C 0.024 3.976 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.054 4.054 27 C -0.131 4.131 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.411 0.589 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.264 0.736 47 H 0.137 0.863 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 25.472 -21.738 33.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.045 4.045 6 C -0.141 4.141 7 C -0.099 4.099 8 C -0.141 4.141 9 C 0.351 3.649 10 O -0.413 6.413 11 N -0.374 5.374 12 C 0.000 4.000 13 C 0.297 3.703 14 O -0.408 6.408 15 O -0.264 6.264 16 C 0.003 3.997 17 C -0.013 4.013 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.073 4.073 27 C -0.149 4.149 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.250 0.750 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.155 0.845 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.929 25.617 -21.202 33.484 hybrid contribution -0.688 -1.459 -0.281 1.638 sum -4.617 24.157 -21.483 32.656 Atomic orbital electron populations 1.21904 0.93313 1.02343 1.02130 1.19590 0.95993 0.95222 0.92602 1.21989 1.01345 0.94786 1.02195 1.21905 1.01401 1.00340 0.96047 1.20075 0.95388 0.93806 0.95220 1.20928 1.01106 0.94382 0.97722 1.21369 0.95343 0.99749 0.93447 1.19833 1.02716 0.95555 0.96028 1.18231 0.80004 0.80884 0.85761 1.90795 1.37850 1.66076 1.46586 1.45674 1.54354 1.12148 1.25242 1.20669 1.01803 0.87322 0.90229 1.23286 0.77854 0.88658 0.80505 1.90614 1.36403 1.77198 1.36610 1.86526 1.69128 1.26018 1.44740 1.23748 0.98241 0.74918 1.02766 1.19189 0.97986 0.93336 0.90819 1.20920 1.32730 0.95224 1.07895 0.92290 1.24982 0.94932 0.99074 0.95103 1.69959 1.36677 1.35640 1.10385 0.86515 0.79363 0.83719 0.77588 1.20066 1.21080 1.20071 1.21280 0.96677 0.92799 0.96574 1.21184 0.98879 1.00658 0.94195 0.92326 0.92130 0.92216 0.92081 0.92174 0.92085 0.92212 0.92132 0.92327 0.85389 0.85329 0.74971 0.86844 0.86851 0.92049 0.92053 0.95214 0.95218 0.92588 0.84539 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.29 37.16 0.31 -0.38 16 2 C -0.03 -0.18 0.85 -155.66 -0.13 -0.31 16 3 C -0.15 -0.65 7.13 37.16 0.26 -0.39 16 4 C -0.14 -0.68 8.29 37.16 0.31 -0.38 16 5 C -0.04 -0.32 4.77 -104.53 -0.50 -0.81 16 6 C -0.12 -0.92 8.69 -39.64 -0.34 -1.26 16 7 C -0.08 -0.70 9.54 -39.19 -0.37 -1.07 16 8 C -0.14 -1.44 5.87 -104.97 -0.62 -2.05 16 9 C 0.56 7.05 7.77 -12.33 -0.10 6.95 16 10 O -0.54 -8.20 16.35 5.32 0.09 -8.11 16 11 N -0.72 -8.49 5.48 -62.43 -0.34 -8.83 16 12 C 0.12 1.56 6.27 -5.20 -0.03 1.53 16 13 C 0.45 7.27 8.03 36.01 0.29 7.56 16 14 O -0.52 -9.11 15.42 -18.74 -0.29 -9.40 16 15 O -0.35 -6.60 10.22 -39.27 -0.40 -7.00 16 16 C 0.08 1.62 5.40 37.16 0.20 1.82 16 17 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 18 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 22 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.05 -0.51 9.60 -39.18 -0.38 -0.89 16 27 C -0.13 -0.99 8.96 -39.64 -0.36 -1.35 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 7.38 -51.93 -0.38 -0.09 16 31 H 0.06 0.27 7.51 -51.93 -0.39 -0.12 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.27 7.50 -51.93 -0.39 -0.12 16 34 H 0.06 0.29 7.38 -51.93 -0.38 -0.09 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.13 0.74 7.08 -52.49 -0.37 0.37 16 38 H 0.13 0.97 6.41 -52.48 -0.34 0.64 16 39 H 0.41 4.51 5.48 -40.82 -0.22 4.29 16 40 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 44 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 47 H 0.14 1.27 7.65 -52.48 -0.40 0.87 16 48 H 0.13 0.75 5.87 -52.49 -0.31 0.45 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.12 398.81 -8.61 -40.73 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.38 Total: -0.29 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.02 Total: -3.93 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.39 Total: -34.16 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.60 Total: -24.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.12 -8.61 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023076128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.634 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds