Wall clock time and date at job start Tue Mar 31 2020 18:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47038 * 179.97438 * 12 11 9 14 14 O 1.20816 * 120.00256 * 0.02562 * 13 12 11 15 15 O 1.34234 * 119.99593 * 180.02562 * 13 12 11 16 16 C 1.45202 * 116.99627 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47135 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47313 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00375 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47427 * 60.00530 * 22 20 18 24 24 H 1.48500 * 109.46914 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47229 * 300.00089 * 22 20 18 26 26 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 27 27 C 1.37955 * 119.85778 * 359.73229 * 26 8 7 28 28 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 29 29 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 33 33 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 34 34 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 35 35 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 36 36 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 38 38 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 39 39 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 41 41 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 42 42 H 1.09000 * 109.47103 * 299.99797 * 16 15 13 43 43 H 1.09000 * 109.47348 * 59.99153 * 16 15 13 44 44 H 1.09008 * 109.46850 * 299.99629 * 17 16 15 45 45 H 1.08999 * 109.47175 * 59.99170 * 17 16 15 46 46 H 0.96991 * 120.00084 * 179.97438 * 21 20 18 47 47 H 1.08003 * 120.06670 * 179.70533 * 26 8 7 48 48 H 1.07997 * 119.92668 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1079 -6.1145 6.1083 14 8 2.4140 -6.5099 5.2017 15 8 3.4315 -6.9408 7.1154 16 6 2.9130 -8.2954 7.0492 17 6 3.3842 -9.0824 8.2738 18 6 2.8455 -10.4881 8.2054 19 1 2.2284 -10.7899 7.3720 20 6 3.1404 -11.3890 9.2066 21 7 3.8915 -11.0212 10.2217 22 14 2.4721 -13.1312 9.1221 23 1 2.9672 -13.7920 7.8879 24 1 2.9295 -13.8950 10.3106 25 1 0.9878 -13.0915 9.1010 26 6 3.2901 -0.6794 3.2679 27 6 2.8273 -0.0350 2.1394 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6768 -1.7488 -1.2494 35 1 1.6767 -0.2072 -2.1392 36 1 3.1301 -0.7207 -1.2495 37 1 1.0749 -2.5565 0.7331 38 1 1.8822 -3.7227 2.7426 39 1 2.5649 -4.4747 4.2732 40 1 4.7001 -4.6931 6.1090 41 1 3.2460 -4.1800 6.9983 42 1 1.8235 -8.2670 7.0323 43 1 3.2778 -8.7803 6.1437 44 1 4.4738 -9.1108 8.2902 45 1 3.0197 -8.5976 9.1794 46 1 4.0987 -11.6548 10.9262 47 1 3.9099 -0.1509 3.9772 48 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023076128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:54 Heat of formation + Delta-G solvation = -137.552753 kcal Electronic energy + Delta-G solvation = -26945.780940 eV Core-core repulsion = 22964.214293 eV Total energy + Delta-G solvation = -3981.566647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.87562 -41.24464 -40.10911 -37.96769 -37.08180 -35.81354 -35.46800 -32.52403 -32.16822 -31.57483 -29.36269 -28.20164 -28.07980 -26.94393 -24.99275 -23.37873 -23.08335 -22.22018 -21.86421 -20.16164 -19.72101 -18.82271 -18.11658 -17.91564 -17.47158 -17.17781 -16.57519 -16.44636 -16.27949 -15.88538 -15.73178 -15.31478 -15.10150 -14.99663 -14.61589 -14.38109 -14.31638 -14.13566 -14.06230 -13.63183 -13.56732 -13.13529 -13.05157 -12.90422 -12.75940 -12.61113 -12.60024 -12.51291 -12.37850 -11.99378 -11.82723 -11.73663 -11.59561 -11.52731 -11.42520 -11.39864 -11.22052 -10.61158 -10.48406 -9.97884 -9.73376 -8.27169 -6.40735 -0.21678 0.39178 0.96446 1.25508 1.42651 1.44810 1.53393 1.71591 2.15583 2.40267 2.81684 3.07440 3.40627 3.54328 3.71848 3.75248 3.96725 4.09425 4.12082 4.13210 4.20666 4.22734 4.26995 4.34725 4.40030 4.49059 4.67509 4.79707 4.81182 4.81417 4.93252 4.97383 4.99979 5.06018 5.06487 5.09167 5.21414 5.23940 5.30213 5.36857 5.45420 5.45631 5.46215 5.47568 5.64359 5.72143 5.89775 6.05014 6.25726 6.52228 6.73070 6.95234 7.29231 8.85030 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.001613 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.700261 B =17355.607116 C =18195.336009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.040 4.040 6 C -0.126 4.126 7 C -0.082 4.082 8 C -0.159 4.159 9 C 0.565 3.435 10 O -0.569 6.569 11 N -0.713 5.713 12 C 0.133 3.867 13 C 0.459 3.541 14 O -0.531 6.531 15 O -0.359 6.359 16 C 0.091 3.909 17 C 0.028 3.972 18 C -0.552 4.552 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.974 3.026 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.266 1.266 26 C -0.065 4.065 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.416 0.584 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.268 0.732 47 H 0.130 0.870 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 25.751 -23.833 35.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.204 4.204 4 C -0.197 4.197 5 C -0.041 4.041 6 C -0.143 4.143 7 C -0.101 4.101 8 C -0.162 4.162 9 C 0.355 3.645 10 O -0.450 6.450 11 N -0.370 5.370 12 C 0.008 3.992 13 C 0.303 3.697 14 O -0.421 6.421 15 O -0.274 6.274 16 C 0.018 3.982 17 C -0.010 4.010 18 C -0.590 4.590 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.190 1.190 26 C -0.084 4.084 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.256 0.744 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.148 0.852 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.128 25.905 -23.328 35.236 hybrid contribution -0.325 -1.434 0.297 1.500 sum -5.453 24.471 -23.030 34.044 Atomic orbital electron populations 1.21908 0.92814 1.02514 1.02423 1.19641 0.96313 0.95560 0.91808 1.22004 1.01412 0.94261 1.02740 1.21908 1.01059 1.00504 0.96189 1.20378 0.94352 0.93785 0.95550 1.21182 1.00952 0.94657 0.97543 1.21492 0.94942 1.00182 0.93465 1.19770 1.04421 0.96075 0.95936 1.18567 0.79291 0.80686 0.86003 1.90771 1.39543 1.66745 1.47909 1.45648 1.54258 1.12051 1.25002 1.20696 1.02422 0.84909 0.91157 1.23809 0.77237 0.89235 0.79380 1.90608 1.37024 1.77596 1.36896 1.86502 1.69493 1.25207 1.46198 1.23252 0.98201 0.76080 1.00638 1.19011 0.96416 0.93644 0.91902 1.21352 1.32978 0.96309 1.08329 0.91477 1.25965 0.95022 1.03748 0.94559 1.70088 1.37898 1.37323 1.11196 0.85374 0.78985 0.78009 0.77921 1.19029 1.20629 1.19043 1.21353 0.97068 0.92672 0.97293 1.21393 0.98513 1.01484 0.93498 0.92872 0.91037 0.92133 0.92033 0.91209 0.92036 0.92129 0.91039 0.92875 0.83523 0.84497 0.74379 0.85594 0.85605 0.91643 0.91647 0.97446 0.97451 0.92368 0.85164 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.29 71.98 0.60 -0.46 16 2 C -0.03 -0.28 0.85 -52.93 -0.05 -0.33 16 3 C -0.15 -1.00 7.13 71.98 0.51 -0.49 16 4 C -0.14 -1.06 8.29 71.98 0.60 -0.46 16 5 C -0.04 -0.50 4.77 -19.81 -0.09 -0.60 16 6 C -0.13 -1.66 8.69 22.23 0.19 -1.47 16 7 C -0.08 -1.34 9.54 22.53 0.21 -1.13 16 8 C -0.16 -3.26 5.87 -20.09 -0.12 -3.38 16 9 C 0.56 14.08 7.77 86.79 0.67 14.76 16 10 O -0.57 -17.62 16.35 -3.89 -0.06 -17.69 16 11 N -0.71 -16.41 5.48 -469.72 -2.57 -18.98 16 12 C 0.13 3.23 6.27 85.64 0.54 3.77 16 13 C 0.46 14.37 8.03 71.24 0.57 14.94 16 14 O -0.53 -18.16 15.42 21.99 0.34 -17.82 16 15 O -0.36 -13.52 10.22 -51.46 -0.53 -14.05 16 16 C 0.09 3.91 5.40 71.98 0.39 4.30 16 17 C 0.03 1.45 5.35 29.85 0.16 1.61 16 18 C -0.55 -30.76 9.11 25.60 0.23 -30.52 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 22 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 C -0.06 -1.21 9.60 22.53 0.22 -0.99 16 27 C -0.13 -1.83 8.96 22.23 0.20 -1.63 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.45 7.38 -2.39 -0.02 0.43 16 31 H 0.06 0.42 7.51 -2.39 -0.02 0.40 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.06 0.42 7.50 -2.38 -0.02 0.40 16 34 H 0.06 0.45 7.38 -2.39 -0.02 0.43 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.15 1.35 7.08 -2.91 -0.02 1.33 16 38 H 0.14 1.91 6.41 -2.91 -0.02 1.89 16 39 H 0.42 8.77 5.48 -92.70 -0.51 8.26 16 40 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.07 2.74 8.13 -2.39 -0.02 2.72 16 43 H 0.07 2.73 8.13 -2.39 -0.02 2.71 16 44 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.27 14.91 8.31 -92.72 -0.77 14.14 16 47 H 0.13 2.51 7.65 -2.91 -0.02 2.49 16 48 H 0.15 1.48 5.87 -2.91 -0.02 1.47 16 Total: -1.00 -68.76 398.81 5.24 -63.51 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.46 Total: 16.01 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.30 Total: -1.27 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -2.29 Total: -73.78 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.25 Total: -49.56 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.76 5.24 -63.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023076128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.040 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds