Wall clock time and date at job start Tue Mar 31 2020 19:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.53004 * 109.46844 * 175.00278 * 3 2 1 5 5 C 1.53004 * 109.46595 * 185.00245 * 4 3 2 6 6 N 1.46498 * 109.47152 * 294.99941 * 3 2 1 7 7 C 1.34781 * 119.99789 * 154.99962 * 6 3 2 8 8 O 1.21282 * 120.00042 * 0.02562 * 7 6 3 9 9 C 1.50700 * 120.00167 * 180.02562 * 7 6 3 10 10 H 1.09003 * 109.47033 * 305.00088 * 9 7 6 11 11 C 1.52998 * 109.47144 * 64.99955 * 9 7 6 12 12 O 1.45193 * 109.47422 * 185.00189 * 9 7 6 13 13 C 1.34700 * 117.00384 * 149.99940 * 12 9 7 14 14 O 1.21474 * 120.00106 * 359.97438 * 13 12 9 15 15 C 1.47766 * 120.00394 * 179.97438 * 13 12 9 16 16 C 1.39966 * 120.02814 * 0.24738 * 15 13 12 17 17 C 1.38327 * 120.35269 * 180.27839 * 16 15 13 18 18 C 1.37759 * 120.41275 * 359.45101 * 17 16 15 19 19 C 1.40751 * 120.05696 * 0.29580 * 18 17 16 20 20 C 1.41433 * 120.17933 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99891 * 24.46790 * 20 19 18 22 22 C 1.39935 * 120.00320 * 204.46981 * 20 19 18 23 23 N 1.30826 * 119.99717 * 17.89632 * 22 20 19 24 24 Si 1.86800 * 120.00295 * 197.89401 * 22 20 19 25 25 H 1.48502 * 109.47026 * 94.69105 * 24 22 20 26 26 H 1.48495 * 109.47256 * 214.69458 * 24 22 20 27 27 H 1.48501 * 109.47008 * 334.69114 * 24 22 20 28 28 C 1.39051 * 120.03287 * 180.02562 * 15 13 12 29 29 H 1.08993 * 109.47119 * 59.99906 * 1 2 3 30 30 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46653 * 299.99611 * 1 2 3 32 32 H 1.09008 * 109.47048 * 240.00190 * 2 1 3 33 33 H 1.08999 * 109.47511 * 120.00114 * 2 1 3 34 34 H 1.08994 * 109.47319 * 55.00142 * 3 2 1 35 35 H 1.09001 * 109.47211 * 304.99553 * 4 3 2 36 36 H 1.08995 * 109.47131 * 65.00507 * 4 3 2 37 37 H 1.09005 * 109.46472 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47310 * 299.99028 * 5 4 3 39 39 H 1.08994 * 109.47674 * 60.00154 * 5 4 3 40 40 H 0.97003 * 120.00200 * 335.00203 * 6 3 2 41 41 H 1.08999 * 109.47206 * 180.02562 * 11 9 7 42 42 H 1.09003 * 109.47068 * 300.00168 * 11 9 7 43 43 H 1.08995 * 109.47315 * 60.00094 * 11 9 7 44 44 H 1.07995 * 119.82993 * 0.02562 * 16 15 13 45 45 H 1.07994 * 119.79179 * 179.72304 * 17 16 15 46 46 H 1.08003 * 119.97162 * 180.27341 * 18 17 16 47 47 H 0.97005 * 120.00153 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.20561 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0644 2.8850 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7327 4.1029 -0.3063 9 6 1.1263 4.1122 -2.5870 10 1 1.8149 3.8187 -3.3794 11 6 -0.2950 3.6900 -2.9642 12 8 1.1734 5.5531 -2.4142 13 6 1.4628 6.2906 -3.5035 14 8 1.6706 5.7450 -4.5688 15 6 1.5275 7.7634 -3.4029 16 6 1.2933 8.3925 -2.1747 17 6 1.3465 9.7711 -2.0741 18 6 1.6415 10.5400 -3.1783 19 6 1.8852 9.9252 -4.4208 20 6 2.1879 10.7122 -5.5563 21 1 2.6161 11.6960 -5.4329 22 6 1.9324 10.2163 -6.8397 23 7 1.1134 9.2089 -7.0005 24 14 2.7607 10.9927 -8.3231 25 1 3.9944 10.2352 -8.6539 26 1 1.8331 10.9587 -9.4822 27 1 3.1131 12.4014 -8.0123 28 6 1.8257 8.5254 -4.5271 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6054 1.9815 0.8418 35 1 3.8571 0.8800 1.0113 36 1 4.0029 0.9837 -0.7597 37 1 5.1508 2.8863 0.3402 38 1 3.7723 3.4494 -0.6345 39 1 3.6264 3.3458 1.1365 40 1 1.4871 1.5661 -2.0463 41 1 -0.5837 4.1770 -3.8956 42 1 -0.3304 2.6083 -3.0940 43 1 -0.9836 3.9835 -2.1718 44 1 1.0658 7.7988 -1.3017 45 1 1.1598 10.2473 -1.1229 46 1 1.6855 11.6156 -3.0907 47 1 0.9360 8.8653 -7.8902 48 1 2.0103 8.0443 -5.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051536577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:15 Heat of formation + Delta-G solvation = -124.465364 kcal Electronic energy + Delta-G solvation = -28683.626010 eV Core-core repulsion = 24702.626875 eV Total energy + Delta-G solvation = -3980.999135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.55479 -39.53148 -37.46178 -36.77850 -35.70158 -33.76746 -33.16004 -32.33028 -31.26534 -30.10714 -29.48711 -26.72067 -25.46576 -24.85493 -23.10391 -22.26729 -21.15290 -20.95225 -20.52435 -19.76048 -18.01698 -17.33232 -16.87213 -16.45697 -15.75874 -15.70635 -15.14155 -14.97341 -14.68922 -14.34156 -14.24582 -14.14392 -13.58427 -13.44568 -13.16349 -13.13094 -12.98757 -12.71649 -12.55882 -12.42508 -12.26959 -11.84619 -11.74221 -11.54886 -11.50952 -11.34978 -11.20876 -11.12676 -10.98520 -10.95557 -10.74411 -10.55823 -10.46955 -10.22308 -9.74139 -9.66791 -9.48420 -9.24792 -9.17229 -7.74672 -7.54993 -6.83188 -4.43525 1.94902 2.53469 2.55461 2.78050 3.06303 3.09908 3.13596 3.47287 3.58522 3.89983 4.29466 4.54952 4.57921 4.63923 4.70153 4.86415 4.98983 5.00092 5.14569 5.19075 5.25320 5.34095 5.50677 5.54411 5.57487 5.63046 5.67256 5.72507 5.75048 5.87930 5.89974 6.00745 6.02669 6.15023 6.31128 6.38832 6.45677 6.61031 6.87653 6.94058 6.97674 7.16912 7.29223 7.31682 7.69315 7.76245 7.91078 8.09804 8.12005 8.44125 8.49716 8.76905 8.79116 10.12301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.002503 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.353855 B =11185.270098 C =11604.137445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.145 3.855 4 C -0.134 4.134 5 C -0.148 4.148 6 N -0.724 5.724 7 C 0.520 3.480 8 O -0.506 6.506 9 C 0.066 3.934 10 H 0.106 0.894 11 C -0.163 4.163 12 O -0.326 6.326 13 C 0.513 3.487 14 O -0.518 6.518 15 C -0.115 4.115 16 C -0.189 4.189 17 C -0.105 4.105 18 C -0.199 4.199 19 C 0.094 3.906 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.788 5.788 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.089 4.089 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.284 0.716 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -17.962 8.917 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.040 3.960 4 C -0.173 4.173 5 C -0.205 4.205 6 N -0.378 5.378 7 C 0.305 3.695 8 O -0.380 6.380 9 C 0.007 3.993 10 H 0.124 0.876 11 C -0.220 4.220 12 O -0.242 6.242 13 C 0.361 3.639 14 O -0.408 6.408 15 C -0.116 4.116 16 C -0.208 4.208 17 C -0.123 4.123 18 C -0.219 4.219 19 C 0.092 3.908 20 C -0.489 4.489 21 H 0.101 0.899 22 C -0.145 4.145 23 N -0.413 5.413 24 Si 0.735 3.265 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.180 -17.783 9.161 20.004 hybrid contribution 0.198 -0.142 -1.249 1.272 sum 0.018 -17.925 7.912 19.593 Atomic orbital electron populations 1.21781 0.95205 1.01683 1.02438 1.21830 0.96643 0.95341 1.03070 1.21114 0.94645 0.92833 0.87360 1.21981 0.94974 0.98390 1.01950 1.21822 0.99780 0.95663 1.03257 1.45936 1.71685 1.06420 1.13797 1.20194 0.77100 0.82355 0.89895 1.90752 1.47530 1.63788 1.35896 1.22286 0.99910 0.80915 0.96179 0.87649 1.22127 0.94416 1.01806 1.03671 1.86766 1.81772 1.16870 1.38799 1.22019 0.71782 0.89315 0.80823 1.90747 1.47412 1.73429 1.29189 1.18787 1.10276 0.86080 0.96485 1.20641 1.10005 0.94454 0.95724 1.20529 1.01038 0.93426 0.97290 1.21202 1.08693 0.98004 0.93977 1.17540 0.89569 0.91265 0.92468 1.19571 1.36965 1.02661 0.89728 0.89927 1.25958 0.93095 0.94431 1.01062 1.69784 1.24868 1.21133 1.25476 0.86247 0.79875 0.80474 0.79870 1.19236 1.20210 1.18491 1.21652 0.99109 0.93552 0.96485 0.92450 0.92566 0.92493 0.91355 0.90351 0.89179 0.91214 0.91918 0.93536 0.92403 0.92047 0.76664 0.90337 0.90751 0.90960 0.87582 0.88454 0.88306 0.90492 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.80 37.16 0.36 -0.56 16 2 C -0.13 -0.75 5.47 -26.73 -0.15 -0.90 16 3 C 0.14 1.23 2.26 -67.93 -0.15 1.08 16 4 C -0.13 -1.17 5.61 -26.73 -0.15 -1.32 16 5 C -0.15 -1.76 8.51 37.16 0.32 -1.44 16 6 N -0.72 -6.81 4.44 -53.81 -0.24 -7.04 16 7 C 0.52 7.17 5.75 -10.98 -0.06 7.10 16 8 O -0.51 -8.85 13.65 -14.05 -0.19 -9.04 16 9 C 0.07 1.00 2.98 -27.88 -0.08 0.91 16 10 H 0.11 1.55 7.16 -51.93 -0.37 1.17 16 11 C -0.16 -1.97 9.50 37.16 0.35 -1.61 16 12 O -0.33 -6.46 8.66 -47.15 -0.41 -6.87 16 13 C 0.51 11.63 7.87 34.63 0.27 11.90 16 14 O -0.52 -12.29 15.59 -19.25 -0.30 -12.59 16 15 C -0.11 -2.82 5.87 -105.05 -0.62 -3.44 16 16 C -0.19 -4.33 9.62 -38.90 -0.37 -4.70 16 17 C -0.10 -2.32 10.01 -39.72 -0.40 -2.72 16 18 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 19 C 0.09 2.48 5.57 -106.87 -0.60 1.89 16 20 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 21 H 0.08 2.04 7.91 -52.48 -0.42 1.63 16 22 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 23 N -0.79 -20.53 10.96 55.55 0.61 -19.92 16 24 Si 0.91 18.59 29.60 -169.99 -5.03 13.55 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 28 C -0.09 -2.36 8.24 -38.42 -0.32 -2.67 16 29 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.83 5.65 -51.93 -0.29 0.54 16 39 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 40 H 0.40 2.71 8.39 -40.82 -0.34 2.36 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.11 2.29 7.59 -52.49 -0.40 1.89 16 45 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 47 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 48 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -30.74 396.46 -9.51 -40.25 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.52 Total: 7.89 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.40 Total: -12.21 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.37 Total: -26.97 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.90 Total: -28.49 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.74 -9.51 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.213 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds