Wall clock time and date at job start Tue Mar 31 2020 19:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.53004 * 109.46844 * 175.00278 * 3 2 1 5 5 C 1.53004 * 109.46595 * 185.00245 * 4 3 2 6 6 N 1.46498 * 109.47152 * 294.99941 * 3 2 1 7 7 C 1.34781 * 119.99789 * 154.99962 * 6 3 2 8 8 O 1.21282 * 120.00042 * 0.02562 * 7 6 3 9 9 C 1.50700 * 120.00167 * 180.02562 * 7 6 3 10 10 H 1.09003 * 109.47033 * 305.00088 * 9 7 6 11 11 C 1.52998 * 109.47144 * 64.99955 * 9 7 6 12 12 O 1.45193 * 109.47422 * 185.00189 * 9 7 6 13 13 C 1.34700 * 117.00384 * 149.99940 * 12 9 7 14 14 O 1.21474 * 120.00106 * 359.97438 * 13 12 9 15 15 C 1.47766 * 120.00394 * 179.97438 * 13 12 9 16 16 C 1.39966 * 120.02814 * 0.24738 * 15 13 12 17 17 C 1.38327 * 120.35269 * 180.27839 * 16 15 13 18 18 C 1.37759 * 120.41275 * 359.45101 * 17 16 15 19 19 C 1.40751 * 120.05696 * 0.29580 * 18 17 16 20 20 C 1.41433 * 120.17933 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99891 * 24.46790 * 20 19 18 22 22 C 1.39935 * 120.00320 * 204.46981 * 20 19 18 23 23 N 1.30826 * 119.99717 * 17.89632 * 22 20 19 24 24 Si 1.86800 * 120.00295 * 197.89401 * 22 20 19 25 25 H 1.48502 * 109.47026 * 94.69105 * 24 22 20 26 26 H 1.48495 * 109.47256 * 214.69458 * 24 22 20 27 27 H 1.48501 * 109.47008 * 334.69114 * 24 22 20 28 28 C 1.39051 * 120.03287 * 180.02562 * 15 13 12 29 29 H 1.08993 * 109.47119 * 59.99906 * 1 2 3 30 30 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46653 * 299.99611 * 1 2 3 32 32 H 1.09008 * 109.47048 * 240.00190 * 2 1 3 33 33 H 1.08999 * 109.47511 * 120.00114 * 2 1 3 34 34 H 1.08994 * 109.47319 * 55.00142 * 3 2 1 35 35 H 1.09001 * 109.47211 * 304.99553 * 4 3 2 36 36 H 1.08995 * 109.47131 * 65.00507 * 4 3 2 37 37 H 1.09005 * 109.46472 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47310 * 299.99028 * 5 4 3 39 39 H 1.08994 * 109.47674 * 60.00154 * 5 4 3 40 40 H 0.97003 * 120.00200 * 335.00203 * 6 3 2 41 41 H 1.08999 * 109.47206 * 180.02562 * 11 9 7 42 42 H 1.09003 * 109.47068 * 300.00168 * 11 9 7 43 43 H 1.08995 * 109.47315 * 60.00094 * 11 9 7 44 44 H 1.07995 * 119.82993 * 0.02562 * 16 15 13 45 45 H 1.07994 * 119.79179 * 179.72304 * 17 16 15 46 46 H 1.08003 * 119.97162 * 180.27341 * 18 17 16 47 47 H 0.97005 * 120.00153 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.20561 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0644 2.8850 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7327 4.1029 -0.3063 9 6 1.1263 4.1122 -2.5870 10 1 1.8149 3.8187 -3.3794 11 6 -0.2950 3.6900 -2.9642 12 8 1.1734 5.5531 -2.4142 13 6 1.4628 6.2906 -3.5035 14 8 1.6706 5.7450 -4.5688 15 6 1.5275 7.7634 -3.4029 16 6 1.2933 8.3925 -2.1747 17 6 1.3465 9.7711 -2.0741 18 6 1.6415 10.5400 -3.1783 19 6 1.8852 9.9252 -4.4208 20 6 2.1879 10.7122 -5.5563 21 1 2.6161 11.6960 -5.4329 22 6 1.9324 10.2163 -6.8397 23 7 1.1134 9.2089 -7.0005 24 14 2.7607 10.9927 -8.3231 25 1 3.9944 10.2352 -8.6539 26 1 1.8331 10.9587 -9.4822 27 1 3.1131 12.4014 -8.0123 28 6 1.8257 8.5254 -4.5271 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6054 1.9815 0.8418 35 1 3.8571 0.8800 1.0113 36 1 4.0029 0.9837 -0.7597 37 1 5.1508 2.8863 0.3402 38 1 3.7723 3.4494 -0.6345 39 1 3.6264 3.3458 1.1365 40 1 1.4871 1.5661 -2.0463 41 1 -0.5837 4.1770 -3.8956 42 1 -0.3304 2.6083 -3.0940 43 1 -0.9836 3.9835 -2.1718 44 1 1.0658 7.7988 -1.3017 45 1 1.1598 10.2473 -1.1229 46 1 1.6855 11.6156 -3.0907 47 1 0.9360 8.8653 -7.8902 48 1 2.0103 8.0443 -5.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051536577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:14 Heat of formation + Delta-G solvation = -140.253115 kcal Electronic energy + Delta-G solvation = -28684.310619 eV Core-core repulsion = 24702.626875 eV Total energy + Delta-G solvation = -3981.683744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.91464 -40.90023 -39.23566 -37.88965 -37.19363 -35.64466 -34.25031 -32.97593 -32.54581 -31.75754 -31.36417 -27.48699 -27.34172 -26.16645 -24.65489 -22.91540 -22.88488 -22.08769 -21.58070 -21.35506 -19.77044 -18.59512 -18.35615 -17.64877 -17.38187 -17.11093 -16.63653 -16.47574 -16.24883 -15.58795 -15.29029 -15.00218 -14.86301 -14.77439 -14.56120 -14.40989 -14.20755 -13.90084 -13.88399 -13.55513 -13.45081 -13.24385 -13.01014 -12.84501 -12.77727 -12.58033 -12.53872 -12.30851 -12.23404 -12.06829 -11.95305 -11.89835 -11.76316 -11.60766 -11.56633 -11.36669 -11.10943 -10.80378 -10.07445 -9.65208 -9.47605 -8.69853 -6.40924 0.07869 0.93966 1.26421 1.38130 1.43606 1.45845 1.52826 1.75121 2.19022 2.28284 2.70260 3.49334 3.60054 3.68706 3.72644 3.81960 3.87329 4.03404 4.12753 4.34443 4.37651 4.46578 4.51731 4.56199 4.56907 4.60262 4.69447 4.82152 4.91601 4.97500 4.99955 5.02363 5.02799 5.09465 5.11091 5.15730 5.18024 5.20234 5.26523 5.40272 5.41907 5.44629 5.54835 5.78486 5.87082 5.98599 6.19614 6.40835 6.50684 6.73891 6.84395 6.86238 7.12690 8.27995 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.002503 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.353855 B =11185.270098 C =11604.137445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C 0.143 3.857 4 C -0.130 4.130 5 C -0.147 4.147 6 N -0.701 5.701 7 C 0.524 3.476 8 O -0.549 6.549 9 C 0.055 3.945 10 H 0.108 0.892 11 C -0.156 4.156 12 O -0.333 6.333 13 C 0.518 3.482 14 O -0.537 6.537 15 C -0.128 4.128 16 C -0.185 4.185 17 C -0.099 4.099 18 C -0.203 4.203 19 C 0.066 3.934 20 C -0.491 4.491 21 H 0.088 0.912 22 C 0.030 3.970 23 N -0.824 5.824 24 Si 0.985 3.015 25 H -0.266 1.266 26 H -0.268 1.268 27 H -0.251 1.251 28 C -0.119 4.119 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.042 0.958 40 H 0.415 0.585 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.289 0.711 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 -19.668 9.511 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.039 3.961 4 C -0.168 4.168 5 C -0.204 4.204 6 N -0.356 5.356 7 C 0.309 3.691 8 O -0.426 6.426 9 C -0.004 4.004 10 H 0.126 0.874 11 C -0.214 4.214 12 O -0.249 6.249 13 C 0.365 3.635 14 O -0.428 6.428 15 C -0.130 4.130 16 C -0.204 4.204 17 C -0.117 4.117 18 C -0.222 4.222 19 C 0.063 3.937 20 C -0.520 4.520 21 H 0.106 0.894 22 C -0.185 4.185 23 N -0.449 5.449 24 Si 0.806 3.194 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.174 1.174 28 C -0.139 4.139 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.100 0.900 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.123 -19.541 9.771 21.848 hybrid contribution 0.147 0.274 -1.271 1.308 sum 0.024 -19.267 8.500 21.059 Atomic orbital electron populations 1.21801 0.95381 1.02346 1.01773 1.21795 0.96357 0.93033 1.04693 1.21252 0.94682 0.94288 0.85864 1.21978 0.94814 0.96344 1.03651 1.21785 1.00223 0.97484 1.00940 1.45802 1.69824 1.04865 1.15075 1.19991 0.76873 0.83561 0.88643 1.90740 1.49837 1.65007 1.37005 1.22771 1.02044 0.78221 0.97321 0.87404 1.22145 0.92170 1.04471 1.02572 1.86699 1.81041 1.19715 1.37429 1.21705 0.71565 0.89067 0.81123 1.90717 1.48301 1.73791 1.30014 1.19049 1.09800 0.87475 0.96633 1.20906 1.08865 0.95179 0.95457 1.20935 0.99255 0.93042 0.98456 1.21494 1.07966 0.99166 0.93591 1.17919 0.90307 0.91507 0.93924 1.19865 1.38267 1.03238 0.90663 0.89384 1.26872 0.93064 0.94730 1.03824 1.69866 1.26078 1.22553 1.26425 0.85139 0.78582 0.79758 0.75962 1.19099 1.19266 1.17438 1.21471 1.02034 0.94104 0.96295 0.92711 0.91246 0.93640 0.89558 0.88853 0.91289 0.88971 0.90590 0.92811 0.95315 0.93868 0.74740 0.92053 0.86288 0.90990 0.86053 0.84433 0.86488 0.90028 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.80 71.98 0.71 -0.74 16 2 C -0.12 -0.98 5.47 30.60 0.17 -0.82 16 3 C 0.14 2.16 2.26 44.99 0.10 2.26 16 4 C -0.13 -1.99 5.61 30.60 0.17 -1.81 16 5 C -0.15 -3.47 8.51 71.98 0.61 -2.86 16 6 N -0.70 -12.00 4.44 -442.53 -1.97 -13.97 16 7 C 0.52 14.29 5.75 87.66 0.50 14.80 16 8 O -0.55 -19.56 13.65 15.71 0.21 -19.34 16 9 C 0.05 1.64 2.98 29.85 0.09 1.73 16 10 H 0.11 3.17 7.16 -2.39 -0.02 3.15 16 11 C -0.16 -3.62 9.50 71.98 0.68 -2.93 16 12 O -0.33 -13.48 8.66 -49.72 -0.43 -13.91 16 13 C 0.52 24.27 7.87 70.34 0.55 24.83 16 14 O -0.54 -26.49 15.59 19.92 0.31 -26.18 16 15 C -0.13 -6.50 5.87 -20.14 -0.12 -6.62 16 16 C -0.18 -8.45 9.62 22.71 0.22 -8.23 16 17 C -0.10 -4.28 10.01 22.18 0.22 -4.05 16 18 C -0.20 -9.66 9.78 22.77 0.22 -9.44 16 19 C 0.07 3.57 5.57 -21.32 -0.12 3.46 16 20 C -0.49 -26.28 9.05 23.47 0.21 -26.07 16 21 H 0.09 4.43 7.91 -2.91 -0.02 4.40 16 22 C 0.03 1.55 5.14 85.25 0.44 1.99 16 23 N -0.82 -44.58 10.96 21.82 0.24 -44.34 16 24 Si 0.99 38.56 29.60 68.60 2.03 40.59 16 25 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 27 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 28 C -0.12 -6.65 8.24 23.02 0.19 -6.46 16 29 H 0.05 0.53 7.75 -2.39 -0.02 0.51 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 1.39 7.58 -2.39 -0.02 1.38 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.03 0.83 5.65 -2.39 -0.01 0.82 16 39 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 40 H 0.42 4.46 8.39 -92.71 -0.78 3.68 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 1.63 7.93 -2.39 -0.02 1.61 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 45 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 46 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 47 H 0.29 14.27 8.30 -92.70 -0.77 13.50 16 48 H 0.11 6.62 5.74 -2.91 -0.02 6.60 16 Total: -1.00 -70.95 396.46 5.44 -65.51 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.19 Total: 32.61 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.86 Total: -20.97 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -1.73 Total: -58.31 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: 0.09 Total: -59.43 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -70.95 5.44 -65.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.742 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds