Wall clock time and date at job start Tue Mar 31 2020 19:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47321 * 2 1 4 4 C 1.52996 * 109.47239 * 174.99815 * 3 2 1 5 5 C 1.52998 * 109.47032 * 185.00108 * 4 3 2 6 6 N 1.46495 * 109.47036 * 295.00139 * 3 2 1 7 7 C 1.34785 * 119.99769 * 154.99594 * 6 3 2 8 8 O 1.21276 * 119.99891 * 0.02562 * 7 6 3 9 9 C 1.50694 * 119.99739 * 179.97438 * 7 6 3 10 10 H 1.09005 * 109.47481 * 55.00686 * 9 7 6 11 11 C 1.52998 * 109.47577 * 295.00620 * 9 7 6 12 12 O 1.45205 * 109.47095 * 175.00358 * 9 7 6 13 13 C 1.34701 * 117.00018 * 210.00172 * 12 9 7 14 14 O 1.21463 * 120.00290 * 0.02562 * 13 12 9 15 15 C 1.47774 * 119.99982 * 179.97438 * 13 12 9 16 16 C 1.39966 * 120.02719 * 359.73018 * 15 13 12 17 17 C 1.38316 * 120.35013 * 179.76184 * 16 15 13 18 18 C 1.37762 * 120.41694 * 0.51333 * 17 16 15 19 19 C 1.40748 * 120.04997 * 359.73966 * 18 17 16 20 20 C 1.41440 * 120.17382 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00139 * 24.43895 * 20 19 18 22 22 C 1.39933 * 120.00086 * 204.44059 * 20 19 18 23 23 N 1.30824 * 119.99913 * 17.88092 * 22 20 19 24 24 Si 1.86802 * 120.00107 * 197.88102 * 22 20 19 25 25 H 1.48501 * 109.47193 * 60.00035 * 24 22 20 26 26 H 1.48505 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46886 * 299.99845 * 24 22 20 28 28 C 1.39048 * 120.02824 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47014 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47216 * 59.99580 * 1 2 3 32 32 H 1.08997 * 109.47014 * 239.99922 * 2 1 3 33 33 H 1.09001 * 109.47216 * 120.00420 * 2 1 3 34 34 H 1.08998 * 109.46744 * 55.00168 * 3 2 1 35 35 H 1.08994 * 109.47208 * 305.00409 * 4 3 2 36 36 H 1.09007 * 109.47033 * 65.00044 * 4 3 2 37 37 H 1.09006 * 109.46923 * 180.02562 * 5 4 3 38 38 H 1.09000 * 109.47285 * 299.99781 * 5 4 3 39 39 H 1.08994 * 109.47233 * 60.00678 * 5 4 3 40 40 H 0.96996 * 119.99977 * 335.00012 * 6 3 2 41 41 H 1.09002 * 109.47647 * 59.99641 * 11 9 7 42 42 H 1.09009 * 109.47119 * 299.99844 * 11 9 7 43 43 H 1.09004 * 109.47458 * 180.02562 * 11 9 7 44 44 H 1.07999 * 119.82794 * 359.97438 * 16 15 13 45 45 H 1.07995 * 119.79003 * 180.25372 * 17 16 15 46 46 H 1.08006 * 119.96942 * 179.76549 * 18 17 16 47 47 H 0.97005 * 120.00095 * 180.02562 * 23 22 20 48 48 H 1.07994 * 120.21040 * 359.95775 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7328 4.1029 -0.3062 9 6 1.1275 4.1123 -2.5872 10 1 0.1945 3.6807 -2.9499 11 6 2.2255 3.9045 -3.6323 12 8 0.9446 5.5336 -2.3534 13 6 0.0443 6.1698 -3.1274 14 8 -0.5715 5.5541 -3.9742 15 6 -0.1951 7.6167 -2.9456 16 6 0.5092 8.3254 -1.9655 17 6 0.2939 9.6807 -1.7928 18 6 -0.6233 10.3466 -2.5759 19 6 -1.3449 9.6498 -3.5631 20 6 -2.2868 10.3309 -4.3690 21 1 -2.1937 11.3954 -4.5259 22 6 -3.3394 9.6257 -4.9628 23 7 -3.6681 8.4412 -4.5150 24 14 -4.2754 10.3754 -6.3951 25 1 -3.3383 10.6339 -7.5178 26 1 -5.3341 9.4345 -6.8414 27 1 -4.8974 11.6535 -5.9652 28 6 -1.1240 8.2741 -3.7447 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6055 1.9815 0.8418 35 1 3.8570 0.8800 1.0113 36 1 4.0030 0.9835 -0.7596 37 1 5.1509 2.8863 0.3403 38 1 3.7723 3.4493 -0.6344 39 1 3.6265 3.3457 1.1365 40 1 1.4871 1.5661 -2.0462 41 1 2.3629 2.8376 -3.8079 42 1 3.1585 4.3362 -3.2698 43 1 1.9377 4.3923 -4.5637 44 1 1.2270 7.8120 -1.3430 45 1 0.8454 10.2195 -1.0365 46 1 -0.7883 11.4043 -2.4323 47 1 -4.3975 7.9521 -4.9269 48 1 -1.6722 7.7308 -4.5000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051536579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:20 Heat of formation + Delta-G solvation = -124.395797 kcal Electronic energy + Delta-G solvation = -28671.412260 eV Core-core repulsion = 24690.416141 eV Total energy + Delta-G solvation = -3980.996119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.55465 -39.53129 -37.45943 -36.77215 -35.70022 -33.76608 -33.14275 -32.32292 -31.29567 -30.11198 -29.48666 -26.69076 -25.46707 -24.86836 -23.10498 -22.26101 -21.15695 -20.95233 -20.51310 -19.76312 -18.02022 -17.30953 -16.91222 -16.27740 -15.96639 -15.62254 -15.30686 -14.93005 -14.63208 -14.28963 -14.25115 -13.91114 -13.77727 -13.49755 -13.18900 -13.15479 -12.89466 -12.68699 -12.56527 -12.46178 -12.28818 -11.86174 -11.68328 -11.63047 -11.45330 -11.34218 -11.18711 -11.10804 -10.99161 -10.96983 -10.77017 -10.53119 -10.50040 -10.23389 -9.74768 -9.66518 -9.48121 -9.23423 -9.17150 -7.74529 -7.54771 -6.82746 -4.43382 1.95205 2.54522 2.55469 2.79273 3.05886 3.07621 3.14889 3.48517 3.57749 3.89928 4.30564 4.53958 4.57367 4.66823 4.72303 4.85440 4.98201 5.01003 5.14238 5.20044 5.23979 5.35471 5.52069 5.54580 5.60750 5.61530 5.66263 5.72193 5.76257 5.85188 5.93341 5.98355 5.99610 6.15115 6.30378 6.36848 6.45966 6.61121 6.87749 6.94119 6.97870 7.17053 7.29837 7.31862 7.69370 7.76372 7.90987 8.10099 8.12655 8.43873 8.49817 8.77033 8.79125 10.12679 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.002556 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.790408 B =10952.692793 C =11741.495345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.144 3.856 4 C -0.133 4.133 5 C -0.148 4.148 6 N -0.723 5.723 7 C 0.519 3.481 8 O -0.506 6.506 9 C 0.066 3.934 10 H 0.106 0.894 11 C -0.162 4.162 12 O -0.326 6.326 13 C 0.513 3.487 14 O -0.518 6.518 15 C -0.115 4.115 16 C -0.189 4.189 17 C -0.104 4.104 18 C -0.199 4.199 19 C 0.094 3.906 20 C -0.461 4.461 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.788 5.788 24 Si 0.911 3.089 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.265 1.265 28 C -0.088 4.088 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.285 0.715 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -16.585 4.479 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.040 3.960 4 C -0.172 4.172 5 C -0.205 4.205 6 N -0.378 5.378 7 C 0.304 3.696 8 O -0.379 6.379 9 C 0.007 3.993 10 H 0.124 0.876 11 C -0.220 4.220 12 O -0.242 6.242 13 C 0.361 3.639 14 O -0.408 6.408 15 C -0.116 4.116 16 C -0.208 4.208 17 C -0.123 4.123 18 C -0.219 4.219 19 C 0.092 3.908 20 C -0.490 4.490 21 H 0.100 0.900 22 C -0.145 4.145 23 N -0.412 5.412 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.189 1.189 28 C -0.108 4.108 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.233 0.767 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.744 -16.481 4.948 19.775 hybrid contribution -0.649 -0.191 -1.052 1.250 sum 9.095 -16.671 3.896 19.386 Atomic orbital electron populations 1.21790 0.95150 1.01738 1.02558 1.21826 0.96695 0.95294 1.03012 1.21120 0.94607 0.92892 0.87404 1.21968 0.94969 0.98347 1.01906 1.21826 0.99620 0.95736 1.03337 1.45931 1.71744 1.06394 1.13765 1.20188 0.77278 0.82342 0.89745 1.90752 1.47425 1.63821 1.35926 1.22286 1.01388 0.82016 0.93633 0.87590 1.22129 0.98384 1.02683 0.98789 1.86768 1.57631 1.20782 1.59025 1.22019 0.75081 0.89318 0.77515 1.90743 1.47951 1.67918 1.34164 1.18791 1.03169 0.87020 1.02661 1.20635 1.04045 0.94417 1.01748 1.20525 0.98584 0.94005 0.99153 1.21201 1.02614 0.99086 0.99024 1.17528 0.91505 0.91227 0.90533 1.19526 1.07566 0.96210 1.25684 0.89982 1.25957 0.97034 0.94561 0.96982 1.69776 1.24099 1.11936 1.35431 0.86314 0.79072 0.79695 0.81376 1.18721 1.20255 1.18927 1.21644 0.95243 0.95239 0.98655 0.92519 0.92444 0.92424 0.91382 0.90360 0.89186 0.91250 0.91950 0.93641 0.92275 0.92063 0.76673 0.90709 0.90997 0.90421 0.87588 0.88463 0.88313 0.90404 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.80 37.16 0.36 -0.71 16 2 C -0.13 -0.79 5.47 -26.73 -0.15 -0.94 16 3 C 0.14 1.24 2.26 -67.93 -0.15 1.09 16 4 C -0.13 -1.09 5.61 -26.73 -0.15 -1.24 16 5 C -0.15 -1.62 8.51 37.16 0.32 -1.30 16 6 N -0.72 -6.88 4.44 -53.81 -0.24 -7.12 16 7 C 0.52 7.22 5.75 -10.98 -0.06 7.16 16 8 O -0.51 -8.93 13.65 -14.05 -0.19 -9.12 16 9 C 0.07 0.99 2.98 -27.89 -0.08 0.91 16 10 H 0.11 1.57 7.16 -51.93 -0.37 1.19 16 11 C -0.16 -1.91 9.50 37.16 0.35 -1.56 16 12 O -0.33 -6.46 8.66 -47.16 -0.41 -6.87 16 13 C 0.51 11.63 7.87 34.63 0.27 11.91 16 14 O -0.52 -12.28 15.59 -19.24 -0.30 -12.58 16 15 C -0.12 -2.83 5.87 -105.05 -0.62 -3.45 16 16 C -0.19 -4.34 9.62 -38.91 -0.37 -4.71 16 17 C -0.10 -2.32 10.01 -39.73 -0.40 -2.72 16 18 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 19 C 0.09 2.50 5.57 -106.87 -0.60 1.90 16 20 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 21 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 22 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 23 N -0.79 -20.63 10.96 55.55 0.61 -20.03 16 24 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 28 C -0.09 -2.35 8.24 -38.43 -0.32 -2.67 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 7.75 -51.93 -0.40 0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.76 5.64 -51.93 -0.29 0.47 16 39 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 40 H 0.40 2.73 8.39 -40.82 -0.34 2.39 16 41 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 42 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.11 2.29 7.59 -52.49 -0.40 1.89 16 45 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 47 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 48 H 0.14 3.81 5.74 -52.49 -0.30 3.51 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -30.82 396.47 -9.51 -40.33 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.52 Total: 7.96 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.40 Total: -12.09 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.37 Total: -27.14 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.90 Total: -28.56 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.82 -9.51 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.070 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds