Wall clock time and date at job start Tue Mar 31 2020 19:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47321 * 2 1 4 4 C 1.52996 * 109.47239 * 174.99815 * 3 2 1 5 5 C 1.52998 * 109.47032 * 185.00108 * 4 3 2 6 6 N 1.46495 * 109.47036 * 295.00139 * 3 2 1 7 7 C 1.34785 * 119.99769 * 154.99594 * 6 3 2 8 8 O 1.21276 * 119.99891 * 0.02562 * 7 6 3 9 9 C 1.50694 * 119.99739 * 179.97438 * 7 6 3 10 10 H 1.09005 * 109.47481 * 55.00686 * 9 7 6 11 11 C 1.52998 * 109.47577 * 295.00620 * 9 7 6 12 12 O 1.45205 * 109.47095 * 175.00358 * 9 7 6 13 13 C 1.34701 * 117.00018 * 210.00172 * 12 9 7 14 14 O 1.21463 * 120.00290 * 0.02562 * 13 12 9 15 15 C 1.47774 * 119.99982 * 179.97438 * 13 12 9 16 16 C 1.39966 * 120.02719 * 359.73018 * 15 13 12 17 17 C 1.38316 * 120.35013 * 179.76184 * 16 15 13 18 18 C 1.37762 * 120.41694 * 0.51333 * 17 16 15 19 19 C 1.40748 * 120.04997 * 359.73966 * 18 17 16 20 20 C 1.41440 * 120.17382 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00139 * 24.43895 * 20 19 18 22 22 C 1.39933 * 120.00086 * 204.44059 * 20 19 18 23 23 N 1.30824 * 119.99913 * 17.88092 * 22 20 19 24 24 Si 1.86802 * 120.00107 * 197.88102 * 22 20 19 25 25 H 1.48501 * 109.47193 * 60.00035 * 24 22 20 26 26 H 1.48505 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46886 * 299.99845 * 24 22 20 28 28 C 1.39048 * 120.02824 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47014 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47216 * 59.99580 * 1 2 3 32 32 H 1.08997 * 109.47014 * 239.99922 * 2 1 3 33 33 H 1.09001 * 109.47216 * 120.00420 * 2 1 3 34 34 H 1.08998 * 109.46744 * 55.00168 * 3 2 1 35 35 H 1.08994 * 109.47208 * 305.00409 * 4 3 2 36 36 H 1.09007 * 109.47033 * 65.00044 * 4 3 2 37 37 H 1.09006 * 109.46923 * 180.02562 * 5 4 3 38 38 H 1.09000 * 109.47285 * 299.99781 * 5 4 3 39 39 H 1.08994 * 109.47233 * 60.00678 * 5 4 3 40 40 H 0.96996 * 119.99977 * 335.00012 * 6 3 2 41 41 H 1.09002 * 109.47647 * 59.99641 * 11 9 7 42 42 H 1.09009 * 109.47119 * 299.99844 * 11 9 7 43 43 H 1.09004 * 109.47458 * 180.02562 * 11 9 7 44 44 H 1.07999 * 119.82794 * 359.97438 * 16 15 13 45 45 H 1.07995 * 119.79003 * 180.25372 * 17 16 15 46 46 H 1.08006 * 119.96942 * 179.76549 * 18 17 16 47 47 H 0.97005 * 120.00095 * 180.02562 * 23 22 20 48 48 H 1.07994 * 120.21040 * 359.95775 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7328 4.1029 -0.3062 9 6 1.1275 4.1123 -2.5872 10 1 0.1945 3.6807 -2.9499 11 6 2.2255 3.9045 -3.6323 12 8 0.9446 5.5336 -2.3534 13 6 0.0443 6.1698 -3.1274 14 8 -0.5715 5.5541 -3.9742 15 6 -0.1951 7.6167 -2.9456 16 6 0.5092 8.3254 -1.9655 17 6 0.2939 9.6807 -1.7928 18 6 -0.6233 10.3466 -2.5759 19 6 -1.3449 9.6498 -3.5631 20 6 -2.2868 10.3309 -4.3690 21 1 -2.1937 11.3954 -4.5259 22 6 -3.3394 9.6257 -4.9628 23 7 -3.6681 8.4412 -4.5150 24 14 -4.2754 10.3754 -6.3951 25 1 -3.3383 10.6339 -7.5178 26 1 -5.3341 9.4345 -6.8414 27 1 -4.8974 11.6535 -5.9652 28 6 -1.1240 8.2741 -3.7447 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6055 1.9815 0.8418 35 1 3.8570 0.8800 1.0113 36 1 4.0030 0.9835 -0.7596 37 1 5.1509 2.8863 0.3403 38 1 3.7723 3.4493 -0.6344 39 1 3.6265 3.3457 1.1365 40 1 1.4871 1.5661 -2.0462 41 1 2.3629 2.8376 -3.8079 42 1 3.1585 4.3362 -3.2698 43 1 1.9377 4.3923 -4.5637 44 1 1.2270 7.8120 -1.3430 45 1 0.8454 10.2195 -1.0365 46 1 -0.7883 11.4043 -2.4323 47 1 -4.3975 7.9521 -4.9269 48 1 -1.6722 7.7308 -4.5000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051536579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:18 Heat of formation + Delta-G solvation = -140.273101 kcal Electronic energy + Delta-G solvation = -28672.100751 eV Core-core repulsion = 24690.416141 eV Total energy + Delta-G solvation = -3981.684610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.91514 -40.90405 -39.23445 -37.88800 -37.19588 -35.64499 -34.22578 -32.97885 -32.55405 -31.76787 -31.36504 -27.45986 -27.34160 -26.17609 -24.65927 -22.90533 -22.88141 -22.09455 -21.57865 -21.35457 -19.77185 -18.58602 -18.37633 -17.59303 -17.29675 -17.16593 -16.63721 -16.56882 -16.33340 -15.43170 -15.22750 -15.00578 -14.82163 -14.75593 -14.72499 -14.41478 -14.19712 -13.92164 -13.84997 -13.55167 -13.39333 -13.27526 -13.03978 -12.84542 -12.76447 -12.58792 -12.48683 -12.28464 -12.23551 -12.08895 -11.99370 -11.91195 -11.72210 -11.61437 -11.58244 -11.36770 -11.08996 -10.79807 -10.07358 -9.65130 -9.47445 -8.69643 -6.40961 0.08121 0.94771 1.26362 1.38010 1.43618 1.46833 1.51662 1.75921 2.19162 2.28202 2.70320 3.49255 3.60288 3.68835 3.71411 3.84401 3.87941 4.02956 4.13310 4.35193 4.37712 4.47382 4.52118 4.57013 4.57613 4.60520 4.69328 4.82143 4.89981 4.99016 5.00788 5.02792 5.05340 5.09637 5.10583 5.14530 5.17948 5.19826 5.26282 5.39751 5.42016 5.46362 5.55321 5.78519 5.87216 5.98521 6.19794 6.40783 6.50521 6.74052 6.84317 6.86419 7.12738 8.27947 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.002556 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.790408 B =10952.692793 C =11741.495345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C 0.141 3.859 4 C -0.127 4.127 5 C -0.147 4.147 6 N -0.701 5.701 7 C 0.524 3.476 8 O -0.550 6.550 9 C 0.054 3.946 10 H 0.107 0.893 11 C -0.155 4.155 12 O -0.333 6.333 13 C 0.518 3.482 14 O -0.536 6.536 15 C -0.129 4.129 16 C -0.185 4.185 17 C -0.099 4.099 18 C -0.203 4.203 19 C 0.066 3.934 20 C -0.492 4.492 21 H 0.089 0.911 22 C 0.030 3.970 23 N -0.825 5.825 24 Si 0.986 3.014 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.415 0.585 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.289 0.711 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -18.106 4.441 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.037 3.963 4 C -0.165 4.165 5 C -0.204 4.204 6 N -0.356 5.356 7 C 0.308 3.692 8 O -0.427 6.427 9 C -0.004 4.004 10 H 0.125 0.875 11 C -0.212 4.212 12 O -0.249 6.249 13 C 0.365 3.635 14 O -0.428 6.428 15 C -0.130 4.130 16 C -0.204 4.204 17 C -0.117 4.117 18 C -0.223 4.223 19 C 0.064 3.936 20 C -0.521 4.521 21 H 0.107 0.893 22 C -0.185 4.185 23 N -0.451 5.451 24 Si 0.806 3.194 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.177 1.177 28 C -0.138 4.138 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.100 0.900 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.990 -18.050 4.916 21.697 hybrid contribution -0.913 0.178 -0.904 1.297 sum 10.077 -17.872 4.012 20.905 Atomic orbital electron populations 1.21816 0.96025 1.02293 1.01393 1.21795 0.95769 0.93311 1.04906 1.21260 0.95230 0.94047 0.85732 1.21946 0.94109 0.96681 1.03773 1.21789 1.00266 0.97269 1.01122 1.45798 1.69893 1.04841 1.15027 1.20020 0.77045 0.83550 0.88547 1.90742 1.49851 1.65059 1.37022 1.22776 1.02761 0.79317 0.95539 0.87495 1.22145 0.96857 1.05476 0.96769 1.86702 1.56273 1.23706 1.58219 1.21701 0.75314 0.88939 0.77501 1.90714 1.48794 1.68287 1.35008 1.19055 1.02845 0.88449 1.02645 1.20901 1.03570 0.94961 1.00991 1.20931 0.97823 0.93768 0.99166 1.21497 1.02319 1.00028 0.98420 1.17910 0.92467 0.91575 0.91663 1.19843 1.08396 0.96785 1.27097 0.89298 1.26885 0.97656 0.94767 0.99171 1.69867 1.24889 1.13460 1.36862 0.85198 0.77633 0.79105 0.77501 1.18340 1.19601 1.17701 1.21465 0.96926 0.95775 0.99678 0.91107 0.93952 0.93327 0.89153 0.88708 0.91914 0.89268 0.89997 0.92489 0.94474 0.94461 0.74722 0.86325 0.90972 0.91809 0.86073 0.84449 0.86478 0.90042 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.80 71.98 0.71 -1.21 16 2 C -0.12 -1.09 5.47 30.60 0.17 -0.93 16 3 C 0.14 2.19 2.26 44.99 0.10 2.29 16 4 C -0.13 -1.75 5.61 30.59 0.17 -1.58 16 5 C -0.15 -3.11 8.51 71.98 0.61 -2.50 16 6 N -0.70 -12.21 4.44 -442.55 -1.97 -14.17 16 7 C 0.52 14.43 5.75 87.65 0.50 14.93 16 8 O -0.55 -19.85 13.65 15.73 0.21 -19.64 16 9 C 0.05 1.63 2.98 29.85 0.09 1.72 16 10 H 0.11 3.17 7.16 -2.38 -0.02 3.16 16 11 C -0.16 -3.48 9.50 71.98 0.68 -2.79 16 12 O -0.33 -13.48 8.66 -49.73 -0.43 -13.91 16 13 C 0.52 24.26 7.87 70.34 0.55 24.81 16 14 O -0.54 -26.45 15.59 19.96 0.31 -26.14 16 15 C -0.13 -6.52 5.87 -20.14 -0.12 -6.64 16 16 C -0.18 -8.46 9.62 22.71 0.22 -8.24 16 17 C -0.10 -4.28 10.01 22.18 0.22 -4.06 16 18 C -0.20 -9.68 9.78 22.77 0.22 -9.46 16 19 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 20 C -0.49 -26.31 9.05 23.47 0.21 -26.10 16 21 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 22 C 0.03 1.56 5.14 85.25 0.44 1.99 16 23 N -0.83 -44.96 10.96 21.82 0.24 -44.72 16 24 Si 0.99 38.50 29.60 68.60 2.03 40.53 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 28 C -0.12 -6.61 8.24 23.02 0.19 -6.42 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.67 7.75 -2.39 -0.02 0.65 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.04 0.94 5.64 -2.39 -0.01 0.93 16 39 H 0.04 0.94 7.85 -2.39 -0.02 0.92 16 40 H 0.42 4.54 8.39 -92.71 -0.78 3.76 16 41 H 0.12 1.57 7.93 -2.39 -0.02 1.55 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.12 5.14 7.59 -2.91 -0.02 5.12 16 45 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 46 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 47 H 0.29 14.43 8.30 -92.70 -0.77 13.66 16 48 H 0.11 6.61 5.74 -2.91 -0.02 6.60 16 Total: -1.00 -71.27 396.47 5.44 -65.83 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.19 Total: 32.92 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.86 Total: -20.70 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -1.73 Total: -58.89 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: 0.10 Total: -59.69 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -71.27 5.44 -65.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.444 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds