Wall clock time and date at job start Tue Mar 31 2020 19:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.53002 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47172 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47181 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00079 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00087 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00046 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47191 * 305.00531 * 9 7 6 11 11 C 1.52998 * 109.46877 * 65.00206 * 9 7 6 12 12 O 1.45198 * 109.47269 * 185.00134 * 9 7 6 13 13 C 1.34706 * 116.99754 * 149.99913 * 12 9 7 14 14 O 1.21465 * 120.00062 * 0.02562 * 13 12 9 15 15 C 1.47769 * 119.99597 * 179.97438 * 13 12 9 16 16 C 1.39963 * 120.03253 * 359.73110 * 15 13 12 17 17 C 1.38314 * 120.35269 * 179.76400 * 16 15 13 18 18 C 1.37759 * 120.41803 * 0.50901 * 17 16 15 19 19 C 1.40754 * 120.05023 * 359.74457 * 18 17 16 20 20 C 1.41439 * 120.17429 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00217 * 334.92872 * 20 19 18 22 22 C 1.39932 * 119.99992 * 154.92873 * 20 19 18 23 23 N 1.30836 * 119.99955 * 342.58009 * 22 20 19 24 24 Si 1.86801 * 120.00302 * 162.58769 * 22 20 19 25 25 H 1.48501 * 109.47002 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47302 * 119.99433 * 24 22 20 27 27 H 1.48491 * 109.47008 * 239.99782 * 24 22 20 28 28 C 1.39049 * 120.02921 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47335 * 300.01109 * 1 2 3 31 31 H 1.09006 * 109.46669 * 60.00383 * 1 2 3 32 32 H 1.08998 * 109.47335 * 239.98891 * 2 1 3 33 33 H 1.09006 * 109.46669 * 119.99617 * 2 1 3 34 34 H 1.08998 * 109.47896 * 59.99235 * 3 2 1 35 35 H 1.09006 * 109.47011 * 299.99408 * 3 2 1 36 36 H 1.08997 * 109.47367 * 59.99448 * 4 3 2 37 37 H 1.09006 * 109.46669 * 299.99617 * 4 3 2 38 38 H 1.08998 * 109.47896 * 59.99235 * 5 4 3 39 39 H 1.09006 * 109.47011 * 299.99408 * 5 4 3 40 40 H 0.97003 * 119.99939 * 359.97438 * 6 5 4 41 41 H 1.09004 * 109.47204 * 179.97438 * 11 9 7 42 42 H 1.09004 * 109.47350 * 299.99852 * 11 9 7 43 43 H 1.09005 * 109.47277 * 59.99860 * 11 9 7 44 44 H 1.08001 * 119.82393 * 359.97438 * 16 15 13 45 45 H 1.08003 * 119.79077 * 180.25325 * 17 16 15 46 46 H 1.08003 * 119.97329 * 179.76420 * 18 17 16 47 47 H 0.96998 * 119.99815 * 179.97438 * 23 22 20 48 48 H 1.08004 * 120.20675 * 359.95672 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 7 5.5450 2.8849 0.0025 7 6 6.2189 4.0521 0.0027 8 8 5.6126 5.1024 0.0024 9 6 7.7260 4.0521 0.0046 10 1 8.0883 3.4631 0.8471 11 6 8.2375 3.4419 -1.3018 12 8 8.2099 5.4159 0.1238 13 6 9.3929 5.5930 0.7431 14 8 10.0038 4.6345 1.1713 15 6 9.9481 6.9534 0.9004 16 6 9.2479 8.0578 0.4013 17 6 9.7590 9.3345 0.5492 18 6 10.9675 9.5333 1.1798 19 6 11.6887 8.4346 1.6837 20 6 12.9295 8.6357 2.3322 21 1 13.5206 9.5112 2.1074 22 6 13.3912 7.7003 3.2649 23 7 12.5607 6.8381 3.7927 24 14 15.1932 7.6828 3.7567 25 1 15.9173 8.7508 3.0216 26 1 15.3100 7.9204 5.2179 27 1 15.7850 6.3629 3.4209 28 6 11.1695 7.1370 1.5391 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 3.9338 0.9284 -0.8890 37 1 3.9329 0.9288 0.8910 38 1 3.7163 3.3986 0.8911 39 1 3.7172 3.3990 -0.8888 40 1 6.0300 2.0449 0.0032 41 1 9.3275 3.4423 -1.3007 42 1 7.8743 2.4180 -1.3914 43 1 7.8752 4.0309 -2.1444 44 1 8.3018 7.9126 -0.0990 45 1 9.2091 10.1805 0.1641 46 1 11.3617 10.5329 1.2880 47 1 12.8808 6.1895 4.4390 48 1 11.7154 6.2876 1.9223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051536696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:24 Heat of formation + Delta-G solvation = -133.246418 kcal Electronic energy + Delta-G solvation = -27406.137648 eV Core-core repulsion = 23424.757738 eV Total energy + Delta-G solvation = -3981.379910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.39873 -39.30693 -37.40689 -36.82234 -35.77973 -34.67984 -33.75413 -32.34531 -30.84136 -30.09656 -29.48980 -26.58146 -25.45018 -24.72366 -23.08287 -22.12529 -21.60140 -20.99131 -20.34704 -19.77178 -18.00566 -17.40875 -16.71677 -16.44492 -16.01847 -15.66855 -15.60387 -15.08682 -14.92443 -14.65065 -14.26851 -14.08682 -13.79342 -13.55803 -13.42852 -13.16042 -13.00631 -12.80281 -12.57432 -12.43369 -12.28262 -12.11203 -11.68224 -11.61616 -11.53522 -11.47739 -11.22954 -11.20067 -11.10301 -10.97913 -10.76103 -10.52264 -10.51202 -10.23276 -9.76919 -9.69203 -9.49586 -9.29874 -9.24927 -7.74635 -7.54386 -6.82459 -4.43415 1.94601 2.50743 2.52706 2.77513 3.06736 3.11237 3.13361 3.46170 3.57014 3.90453 4.29637 4.44613 4.45634 4.57565 4.63835 4.77432 4.84384 4.87619 4.99470 5.10110 5.21888 5.23845 5.27694 5.41968 5.47330 5.54248 5.58163 5.60445 5.63456 5.70983 5.74774 5.86075 5.91175 5.98553 6.14709 6.18862 6.45614 6.60578 6.87081 6.94208 6.97466 7.17035 7.24463 7.31494 7.69266 7.76110 7.91044 8.06645 8.10464 8.44349 8.49136 8.77120 8.79369 10.13210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.001925 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.808530 B =14540.078053 C =15158.568245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.132 4.132 5 C 0.120 3.880 6 N -0.731 5.731 7 C 0.518 3.482 8 O -0.512 6.512 9 C 0.067 3.933 10 H 0.108 0.892 11 C -0.162 4.162 12 O -0.326 6.326 13 C 0.514 3.486 14 O -0.518 6.518 15 C -0.116 4.116 16 C -0.188 4.188 17 C -0.105 4.105 18 C -0.198 4.198 19 C 0.094 3.906 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.789 5.789 24 Si 0.910 3.090 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.271 1.271 28 C -0.087 4.087 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.284 0.716 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 -14.126 -7.153 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.170 4.170 5 C -0.004 4.004 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.385 6.385 9 C 0.008 3.992 10 H 0.126 0.874 11 C -0.220 4.220 12 O -0.243 6.243 13 C 0.361 3.639 14 O -0.408 6.408 15 C -0.117 4.117 16 C -0.208 4.208 17 C -0.123 4.123 18 C -0.218 4.218 19 C 0.092 3.908 20 C -0.490 4.490 21 H 0.101 0.899 22 C -0.145 4.145 23 N -0.414 5.414 24 Si 0.735 3.265 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.107 4.107 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.884 -13.821 -6.847 22.140 hybrid contribution 0.944 -0.674 0.421 1.234 sum -14.940 -14.495 -6.426 21.785 Atomic orbital electron populations 1.21781 0.95789 1.01632 1.01941 1.21523 0.95981 0.96607 1.02089 1.21536 0.94128 0.97212 1.02736 1.21823 0.96507 0.95728 1.02916 1.21383 0.79097 0.97177 1.02709 1.45872 1.07365 1.08346 1.77048 1.20287 0.89085 0.83981 0.76335 1.90748 1.69806 1.31031 1.46946 1.22274 0.91017 0.84580 1.01354 0.87428 1.22132 1.03366 1.00608 0.95884 1.86770 1.37671 1.28057 1.71771 1.22018 0.77725 0.91080 0.73073 1.90744 1.59652 1.42847 1.47508 1.18791 0.98058 0.87685 1.07164 1.20648 1.00825 0.92095 1.07241 1.20528 0.96273 0.95480 0.99999 1.21212 0.96017 0.97652 1.06939 1.17539 0.92585 0.90181 0.90498 1.19583 1.03011 1.06912 1.19455 0.89912 1.25959 0.99780 0.94040 0.94768 1.69793 1.35940 1.14745 1.20886 0.86223 0.82177 0.79376 0.78770 1.18303 1.19926 1.19611 1.21641 0.93303 0.98721 0.97018 0.92785 0.92672 0.92694 0.91991 0.91960 0.91514 0.91546 0.91171 0.91134 0.91323 0.91324 0.76482 0.90341 0.90672 0.90942 0.87565 0.88430 0.88280 0.90529 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.65 5.21 -26.73 -0.14 -0.79 16 4 C -0.13 -0.75 5.33 -26.73 -0.14 -0.89 16 5 C 0.12 1.04 5.67 -4.05 -0.02 1.02 16 6 N -0.73 -7.19 5.52 -60.30 -0.33 -7.52 16 7 C 0.52 7.58 7.18 -10.98 -0.08 7.50 16 8 O -0.51 -9.73 16.51 -14.05 -0.23 -9.96 16 9 C 0.07 1.02 2.98 -27.88 -0.08 0.94 16 10 H 0.11 1.60 7.16 -51.93 -0.37 1.22 16 11 C -0.16 -1.92 9.50 37.16 0.35 -1.57 16 12 O -0.33 -6.57 8.66 -47.17 -0.41 -6.98 16 13 C 0.51 11.71 7.87 34.63 0.27 11.98 16 14 O -0.52 -12.32 15.59 -19.24 -0.30 -12.62 16 15 C -0.12 -2.86 5.87 -105.05 -0.62 -3.47 16 16 C -0.19 -4.35 9.62 -38.91 -0.37 -4.72 16 17 C -0.10 -2.33 10.01 -39.73 -0.40 -2.73 16 18 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 19 C 0.09 2.49 5.57 -106.87 -0.59 1.90 16 20 C -0.46 -12.01 9.05 -37.73 -0.34 -12.35 16 21 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 22 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 23 N -0.79 -20.71 10.97 55.55 0.61 -20.10 16 24 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 28 C -0.09 -2.33 8.23 -38.43 -0.32 -2.65 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 2.71 8.26 -40.82 -0.34 2.37 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.11 2.30 7.59 -52.49 -0.40 1.90 16 45 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 46 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 47 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 48 H 0.14 3.82 5.77 -52.48 -0.30 3.51 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -31.77 405.89 -10.03 -41.80 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.71 Total: 6.09 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.74 Total: -10.38 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.28 Total: -27.62 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.94 Total: -29.56 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.77 -10.03 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.447 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds