Wall clock time and date at job start Tue Mar 31 2020 18:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47314 * 2 1 4 4 C 1.53002 * 109.47142 * 240.00034 * 2 1 3 5 5 C 1.52999 * 109.47580 * 119.99989 * 2 1 3 6 6 C 1.53008 * 109.46788 * 59.99688 * 5 2 1 7 7 N 1.46500 * 109.47104 * 180.02562 * 6 5 2 8 8 C 1.34773 * 120.00112 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99666 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00034 * 180.02562 * 8 7 6 11 11 O 1.45200 * 109.47175 * 179.97438 * 10 8 7 12 12 C 1.34806 * 117.00130 * 180.02562 * 11 10 8 13 13 O 1.21528 * 119.99959 * 359.97438 * 12 11 10 14 14 C 1.47286 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.39297 * 120.29030 * 356.63364 * 14 12 11 16 16 C 1.38198 * 120.08454 * 180.27555 * 15 14 12 17 17 C 1.38830 * 120.68592 * 359.73666 * 16 15 14 18 18 C 1.37603 * 120.58113 * 0.02562 * 17 16 15 19 19 C 1.40701 * 119.88817 * 359.97438 * 18 17 16 20 20 C 1.40864 * 120.33280 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00128 * 215.84805 * 20 19 18 22 22 C 1.40293 * 119.99871 * 35.85025 * 20 19 18 23 23 N 1.30617 * 119.99811 * 190.86883 * 22 20 19 24 24 Si 1.86794 * 120.00115 * 10.86963 * 22 20 19 25 25 H 1.48502 * 109.47207 * 267.46873 * 24 22 20 26 26 H 1.48494 * 109.47415 * 27.47149 * 24 22 20 27 27 H 1.48507 * 109.47011 * 147.47358 * 24 22 20 28 28 H 1.09003 * 109.47039 * 299.99766 * 1 2 3 29 29 H 1.09002 * 109.46746 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47033 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46789 * 300.00190 * 3 2 1 33 33 H 1.08997 * 109.46716 * 59.99717 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00031 * 4 2 1 35 35 H 1.09002 * 109.47364 * 60.00300 * 4 2 1 36 36 H 1.09005 * 109.47000 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46873 * 300.00543 * 5 2 1 38 38 H 1.08991 * 109.47785 * 179.97438 * 5 2 1 39 39 H 1.08997 * 109.46716 * 60.00758 * 6 5 2 40 40 H 1.08991 * 109.47033 * 300.00553 * 6 5 2 41 41 H 0.97008 * 119.99655 * 359.97438 * 7 6 5 42 42 H 1.09003 * 109.47389 * 59.99739 * 10 8 7 43 43 H 1.08999 * 109.46691 * 299.99585 * 10 8 7 44 44 H 1.08005 * 119.95271 * 0.02562 * 15 14 12 45 45 H 1.08000 * 119.65300 * 179.75975 * 16 15 14 46 46 H 1.07996 * 119.70880 * 180.02562 * 17 16 15 47 47 H 1.08002 * 120.05521 * 180.02562 * 18 17 16 48 48 H 0.97002 * 120.00020 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0179 -2.8543 2.4456 8 6 1.6927 -4.1447 2.6587 9 8 0.9957 -4.7341 1.8602 10 6 2.1941 -4.8548 3.8897 11 8 1.7101 -6.2237 3.8897 12 6 2.0712 -7.0005 4.9306 13 8 2.7716 -6.5461 5.8137 14 6 1.6167 -8.3999 4.9977 15 6 0.7571 -8.9068 4.0258 16 6 0.3288 -10.2188 4.0960 17 6 0.7507 -11.0477 5.1267 18 6 1.6036 -10.5773 6.0987 19 6 2.0548 -9.2455 6.0509 20 6 2.9276 -8.7541 7.0414 21 1 2.8391 -7.7325 7.3806 22 6 3.9118 -9.5916 7.5872 23 7 4.5780 -9.2132 8.6451 24 14 4.2696 -11.2479 6.8011 25 1 3.4448 -12.2950 7.4556 26 1 3.9402 -11.1907 5.3543 27 1 5.7086 -11.5748 6.9686 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -0.2074 2.1391 38 1 3.1300 -0.7216 1.2490 39 1 1.8934 -2.6776 0.3592 40 1 0.4401 -2.1637 1.2492 41 1 2.5757 -2.3828 3.0841 42 1 1.8297 -4.3410 4.7794 43 1 3.2841 -4.8543 3.8907 44 1 0.4216 -8.2723 3.2187 45 1 -0.3408 -10.6035 3.3409 46 1 0.4065 -12.0706 5.1660 47 1 1.9268 -11.2296 6.8965 48 1 5.2583 -9.7925 9.0227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061084944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:33 Heat of formation + Delta-G solvation = -120.725423 kcal Electronic energy + Delta-G solvation = -27791.208187 eV Core-core repulsion = 23810.371227 eV Total energy + Delta-G solvation = -3980.836959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.04091 -39.25724 -38.24741 -37.42429 -35.36507 -34.63193 -33.71638 -30.64382 -30.56628 -29.99122 -27.84547 -27.65461 -27.63267 -25.48327 -23.52759 -22.57104 -21.40699 -20.71338 -19.72325 -19.01571 -17.64989 -17.27623 -16.84424 -16.27978 -16.19192 -15.73701 -15.51102 -15.19513 -14.70144 -14.64503 -14.27662 -14.07736 -13.87215 -13.70677 -13.60287 -13.09860 -12.81614 -12.73068 -12.54677 -12.28893 -12.15780 -12.10227 -12.07228 -11.96341 -11.63499 -11.49621 -11.11698 -10.98324 -10.97941 -10.89076 -10.76055 -10.51042 -10.35168 -10.12271 -9.86098 -9.78406 -9.32632 -9.20202 -8.91470 -7.87671 -7.68418 -7.02509 -4.61623 1.94819 2.59297 2.59905 2.64633 3.03943 3.11859 3.24570 3.69561 3.77172 3.89260 4.31210 4.38389 4.39599 4.48497 4.72625 4.88107 4.90717 5.09496 5.25862 5.26378 5.27834 5.29276 5.33443 5.35626 5.40886 5.52749 5.58424 5.63247 5.68145 5.70531 5.85698 5.87636 5.97543 6.00659 6.01778 6.05112 6.26464 6.34078 6.54772 6.71825 7.02367 7.06945 7.24851 7.33172 7.39302 7.61373 7.70089 7.97328 8.15377 8.33697 8.51665 8.72069 8.95147 9.94033 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002136 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.378516 B =13108.081004 C =13930.483845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.122 4.122 6 C 0.117 3.883 7 N -0.734 5.734 8 C 0.516 3.484 9 O -0.516 6.516 10 C 0.051 3.949 11 O -0.345 6.345 12 C 0.502 3.498 13 O -0.506 6.506 14 C -0.239 4.239 15 C -0.017 4.017 16 C -0.256 4.256 17 C -0.058 4.058 18 C -0.227 4.227 19 C 0.119 3.881 20 C -0.402 4.402 21 H 0.124 0.876 22 C 0.079 3.921 23 N -0.787 5.787 24 Si 0.908 3.092 25 H -0.266 1.266 26 H -0.241 1.241 27 H -0.287 1.287 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.401 0.599 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 15.929 -13.099 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.205 4.205 5 C -0.160 4.160 6 C -0.006 4.006 7 N -0.389 5.389 8 C 0.302 3.698 9 O -0.390 6.390 10 C -0.027 4.027 11 O -0.263 6.263 12 C 0.353 3.647 13 O -0.396 6.396 14 C -0.242 4.242 15 C -0.036 4.036 16 C -0.275 4.275 17 C -0.077 4.077 18 C -0.246 4.246 19 C 0.114 3.886 20 C -0.428 4.428 21 H 0.141 0.859 22 C -0.143 4.143 23 N -0.409 5.409 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.164 1.164 27 H -0.214 1.214 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.235 0.765 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.125 0.875 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.739 15.657 -13.204 20.664 hybrid contribution 0.657 -0.330 0.242 0.774 sum -2.082 15.327 -12.962 20.181 Atomic orbital electron populations 1.21981 0.94327 1.02353 1.01859 1.20473 0.95928 0.95441 0.94767 1.21867 1.01006 0.95088 1.01866 1.21983 1.01104 1.00676 0.96767 1.21869 1.01316 0.94328 0.98490 1.21531 0.99720 0.91748 0.87645 1.45867 1.54961 1.11903 1.26130 1.20317 0.80525 0.81683 0.87304 1.90731 1.36343 1.65632 1.46320 1.22377 1.00572 0.83273 0.96504 1.86664 1.70635 1.21095 1.47946 1.21393 0.78181 0.86801 0.78373 1.90783 1.36623 1.73982 1.38247 1.18593 1.13370 0.90657 1.01582 1.21048 0.92589 0.94710 0.95204 1.20391 1.09594 0.94943 1.02571 1.20816 0.95545 0.97642 0.93666 1.21098 1.04765 0.97040 1.01672 1.17498 0.91135 0.90301 0.89644 1.20234 1.09314 1.01604 1.11629 0.85874 1.26414 0.95159 0.99786 0.92902 1.69557 1.17551 1.37805 1.16029 0.86363 0.76821 0.80590 0.82851 1.19183 1.16369 1.21437 0.92528 0.92570 0.92021 0.92589 0.92513 0.92593 0.92017 0.92571 0.92531 0.91065 0.91066 0.91111 0.91111 0.76454 0.88763 0.88718 0.87032 0.88131 0.88281 0.87470 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.12 37.16 0.30 -0.63 16 2 C -0.07 -0.39 0.80 -154.50 -0.12 -0.52 16 3 C -0.14 -0.74 8.47 37.16 0.31 -0.43 16 4 C -0.15 -0.93 8.12 37.16 0.30 -0.63 16 5 C -0.12 -0.77 4.38 -26.73 -0.12 -0.89 16 6 C 0.12 1.06 4.97 -4.04 -0.02 1.04 16 7 N -0.73 -7.45 5.56 -60.30 -0.33 -7.79 16 8 C 0.52 7.62 7.91 -10.99 -0.09 7.53 16 9 O -0.52 -9.76 16.50 -14.10 -0.23 -9.99 16 10 C 0.05 0.80 5.96 36.01 0.21 1.02 16 11 O -0.35 -7.20 9.01 -47.46 -0.43 -7.63 16 12 C 0.50 11.95 7.85 34.41 0.27 12.22 16 13 O -0.51 -12.96 13.32 -19.29 -0.26 -13.21 16 14 C -0.24 -5.88 5.92 -104.39 -0.62 -6.50 16 15 C -0.02 -0.38 9.60 -39.20 -0.38 -0.75 16 16 C -0.26 -5.28 10.03 -39.38 -0.39 -5.67 16 17 C -0.06 -1.22 10.01 -39.59 -0.40 -1.62 16 18 C -0.23 -5.34 7.02 -38.88 -0.27 -5.61 16 19 C 0.12 3.06 5.04 -106.54 -0.54 2.52 16 20 C -0.40 -11.04 8.32 -37.82 -0.31 -11.35 16 21 H 0.12 3.70 5.95 -52.48 -0.31 3.38 16 22 C 0.08 2.06 5.47 -17.30 -0.09 1.96 16 23 N -0.79 -20.72 13.92 55.57 0.77 -19.95 16 24 Si 0.91 20.31 24.51 -169.99 -4.17 16.14 16 25 H -0.27 -5.64 6.74 56.52 0.38 -5.25 16 26 H -0.24 -5.55 6.75 56.52 0.38 -5.17 16 27 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 40 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 41 H 0.40 2.89 8.47 -40.82 -0.35 2.54 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.11 2.29 7.61 -52.48 -0.40 1.90 16 45 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.11 2.45 4.95 -52.49 -0.26 2.19 16 48 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -31.84 388.07 -8.07 -39.91 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.32 Total: 4.98 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.95 Total: -8.31 kcal Atomic # 7 Polarization: -28.17 SS G_CDS: 0.44 Total: -27.73 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.92 Total: -30.83 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.84 -8.07 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061084944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.818 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds