Wall clock time and date at job start Tue Mar 31 2020 18:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47314 * 2 1 4 4 C 1.53002 * 109.47142 * 240.00034 * 2 1 3 5 5 C 1.52999 * 109.47580 * 119.99989 * 2 1 3 6 6 C 1.53008 * 109.46788 * 59.99688 * 5 2 1 7 7 N 1.46500 * 109.47104 * 180.02562 * 6 5 2 8 8 C 1.34773 * 120.00112 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99666 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00034 * 180.02562 * 8 7 6 11 11 O 1.45200 * 109.47175 * 179.97438 * 10 8 7 12 12 C 1.34806 * 117.00130 * 180.02562 * 11 10 8 13 13 O 1.21528 * 119.99959 * 359.97438 * 12 11 10 14 14 C 1.47286 * 119.99961 * 179.97438 * 12 11 10 15 15 C 1.39297 * 120.29030 * 356.63364 * 14 12 11 16 16 C 1.38198 * 120.08454 * 180.27555 * 15 14 12 17 17 C 1.38830 * 120.68592 * 359.73666 * 16 15 14 18 18 C 1.37603 * 120.58113 * 0.02562 * 17 16 15 19 19 C 1.40701 * 119.88817 * 359.97438 * 18 17 16 20 20 C 1.40864 * 120.33280 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00128 * 215.84805 * 20 19 18 22 22 C 1.40293 * 119.99871 * 35.85025 * 20 19 18 23 23 N 1.30617 * 119.99811 * 190.86883 * 22 20 19 24 24 Si 1.86794 * 120.00115 * 10.86963 * 22 20 19 25 25 H 1.48502 * 109.47207 * 267.46873 * 24 22 20 26 26 H 1.48494 * 109.47415 * 27.47149 * 24 22 20 27 27 H 1.48507 * 109.47011 * 147.47358 * 24 22 20 28 28 H 1.09003 * 109.47039 * 299.99766 * 1 2 3 29 29 H 1.09002 * 109.46746 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47033 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46789 * 300.00190 * 3 2 1 33 33 H 1.08997 * 109.46716 * 59.99717 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00031 * 4 2 1 35 35 H 1.09002 * 109.47364 * 60.00300 * 4 2 1 36 36 H 1.09005 * 109.47000 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46873 * 300.00543 * 5 2 1 38 38 H 1.08991 * 109.47785 * 179.97438 * 5 2 1 39 39 H 1.08997 * 109.46716 * 60.00758 * 6 5 2 40 40 H 1.08991 * 109.47033 * 300.00553 * 6 5 2 41 41 H 0.97008 * 119.99655 * 359.97438 * 7 6 5 42 42 H 1.09003 * 109.47389 * 59.99739 * 10 8 7 43 43 H 1.08999 * 109.46691 * 299.99585 * 10 8 7 44 44 H 1.08005 * 119.95271 * 0.02562 * 15 14 12 45 45 H 1.08000 * 119.65300 * 179.75975 * 16 15 14 46 46 H 1.07996 * 119.70880 * 180.02562 * 17 16 15 47 47 H 1.08002 * 120.05521 * 180.02562 * 18 17 16 48 48 H 0.97002 * 120.00020 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0179 -2.8543 2.4456 8 6 1.6927 -4.1447 2.6587 9 8 0.9957 -4.7341 1.8602 10 6 2.1941 -4.8548 3.8897 11 8 1.7101 -6.2237 3.8897 12 6 2.0712 -7.0005 4.9306 13 8 2.7716 -6.5461 5.8137 14 6 1.6167 -8.3999 4.9977 15 6 0.7571 -8.9068 4.0258 16 6 0.3288 -10.2188 4.0960 17 6 0.7507 -11.0477 5.1267 18 6 1.6036 -10.5773 6.0987 19 6 2.0548 -9.2455 6.0509 20 6 2.9276 -8.7541 7.0414 21 1 2.8391 -7.7325 7.3806 22 6 3.9118 -9.5916 7.5872 23 7 4.5780 -9.2132 8.6451 24 14 4.2696 -11.2479 6.8011 25 1 3.4448 -12.2950 7.4556 26 1 3.9402 -11.1907 5.3543 27 1 5.7086 -11.5748 6.9686 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -0.2074 2.1391 38 1 3.1300 -0.7216 1.2490 39 1 1.8934 -2.6776 0.3592 40 1 0.4401 -2.1637 1.2492 41 1 2.5757 -2.3828 3.0841 42 1 1.8297 -4.3410 4.7794 43 1 3.2841 -4.8543 3.8907 44 1 0.4216 -8.2723 3.2187 45 1 -0.3408 -10.6035 3.3409 46 1 0.4065 -12.0706 5.1660 47 1 1.9268 -11.2296 6.8965 48 1 5.2583 -9.7925 9.0227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061084944.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:32 Heat of formation + Delta-G solvation = -139.453817 kcal Electronic energy + Delta-G solvation = -27792.020311 eV Core-core repulsion = 23810.371227 eV Total energy + Delta-G solvation = -3981.649083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.51671 -40.66243 -39.27776 -38.85396 -37.11533 -35.65089 -35.58785 -32.41094 -32.22027 -31.14072 -28.93818 -28.16081 -28.13251 -27.30919 -24.69871 -23.94734 -23.16508 -21.85835 -21.46987 -19.67037 -19.46438 -18.81703 -18.19163 -17.65982 -17.54303 -17.21234 -16.76254 -16.49417 -15.84958 -15.56576 -15.52583 -15.51230 -15.21946 -14.83087 -14.78539 -14.47722 -14.24458 -14.08446 -13.76768 -13.66663 -13.36364 -13.25719 -12.89290 -12.73837 -12.67039 -12.58872 -12.54256 -12.30485 -12.26441 -12.11474 -11.75640 -11.68275 -11.64092 -11.49916 -11.42210 -11.13034 -11.06524 -10.76055 -10.18365 -9.65360 -9.52082 -8.91527 -6.59028 0.13889 0.79850 1.25303 1.36220 1.37300 1.39039 1.47641 1.89462 2.09641 2.43424 2.61655 3.42699 3.56886 3.75630 3.87772 3.91990 4.04554 4.06322 4.20676 4.26542 4.27948 4.31113 4.41055 4.56079 4.66086 4.67789 4.78312 4.80601 4.81344 4.92586 4.93925 5.01240 5.01882 5.10334 5.11118 5.21464 5.24357 5.27383 5.34130 5.41717 5.47769 5.50217 5.52353 5.64497 5.81825 5.89299 6.19786 6.35203 6.38381 6.64420 6.71225 7.05194 7.13278 8.11859 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.002136 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.378516 B =13108.081004 C =13930.483845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.138 4.138 4 C -0.148 4.148 5 C -0.114 4.114 6 C 0.116 3.884 7 N -0.710 5.710 8 C 0.522 3.478 9 O -0.562 6.562 10 C 0.042 3.958 11 O -0.351 6.351 12 C 0.504 3.496 13 O -0.534 6.534 14 C -0.263 4.263 15 C -0.025 4.025 16 C -0.236 4.236 17 C -0.049 4.049 18 C -0.244 4.244 19 C 0.106 3.894 20 C -0.444 4.444 21 H 0.080 0.920 22 C 0.041 3.959 23 N -0.831 5.831 24 Si 0.964 3.036 25 H -0.242 1.242 26 H -0.252 1.252 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.419 0.581 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.113 0.887 48 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 15.259 -15.009 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.206 4.206 5 C -0.152 4.152 6 C -0.007 4.007 7 N -0.364 5.364 8 C 0.308 3.692 9 O -0.440 6.440 10 C -0.035 4.035 11 O -0.269 6.269 12 C 0.354 3.646 13 O -0.426 6.426 14 C -0.266 4.266 15 C -0.043 4.043 16 C -0.255 4.255 17 C -0.067 4.067 18 C -0.263 4.263 19 C 0.102 3.898 20 C -0.472 4.472 21 H 0.098 0.902 22 C -0.175 4.175 23 N -0.457 5.457 24 Si 0.785 3.215 25 H -0.166 1.166 26 H -0.175 1.175 27 H -0.203 1.203 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.256 0.744 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.143 0.857 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.130 0.870 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.578 15.046 -15.109 21.621 hybrid contribution 0.744 0.030 0.629 0.974 sum -2.835 15.075 -14.480 21.095 Atomic orbital electron populations 1.21982 0.94610 1.01665 1.02287 1.20475 0.95688 0.96005 0.94330 1.21838 1.01234 0.94235 1.02249 1.21984 1.01287 1.00045 0.97245 1.21839 1.01886 0.92223 0.99210 1.21651 0.99336 0.93200 0.86508 1.45728 1.53793 1.10308 1.26619 1.20115 0.80070 0.82760 0.86305 1.90712 1.38712 1.66973 1.47635 1.22757 1.01604 0.81082 0.98063 1.86602 1.70508 1.23283 1.46490 1.21428 0.77573 0.87150 0.78424 1.90779 1.37781 1.74697 1.39347 1.18990 1.14099 0.91250 1.02257 1.21282 0.92178 0.95938 0.94885 1.20945 1.08091 0.93848 1.02581 1.21321 0.93497 0.99743 0.92154 1.21260 1.05800 0.96164 1.03040 1.17739 0.90786 0.91913 0.89344 1.20024 1.12297 1.00310 1.14549 0.90238 1.27112 0.94403 1.02888 0.93129 1.69587 1.18975 1.39562 1.17543 0.85533 0.77583 0.77178 0.81164 1.16632 1.17518 1.20262 0.92185 0.92108 0.93239 0.92205 0.92214 0.92185 0.93242 0.92104 0.92217 0.89981 0.90022 0.91976 0.91933 0.74410 0.87203 0.87329 0.85700 0.83998 0.83774 0.86966 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.12 71.98 0.58 -1.12 16 2 C -0.06 -0.68 0.80 -52.18 -0.04 -0.72 16 3 C -0.14 -1.17 8.47 71.98 0.61 -0.56 16 4 C -0.15 -1.72 8.12 71.98 0.58 -1.13 16 5 C -0.11 -1.22 4.38 30.60 0.13 -1.09 16 6 C 0.12 1.99 4.97 86.38 0.43 2.42 16 7 N -0.71 -13.61 5.56 -463.07 -2.57 -16.18 16 8 C 0.52 15.23 7.91 87.66 0.69 15.92 16 9 O -0.56 -21.37 16.50 15.78 0.26 -21.11 16 10 C 0.04 1.34 5.96 71.24 0.42 1.76 16 11 O -0.35 -14.84 9.01 -50.78 -0.46 -15.30 16 12 C 0.50 24.69 7.85 70.20 0.55 25.24 16 13 O -0.53 -28.80 13.32 19.74 0.26 -28.53 16 14 C -0.26 -13.05 5.92 -19.71 -0.12 -13.16 16 15 C -0.02 -1.04 9.60 22.52 0.22 -0.82 16 16 C -0.24 -8.71 10.03 22.40 0.22 -8.48 16 17 C -0.05 -1.85 10.01 22.26 0.22 -1.63 16 18 C -0.24 -11.06 7.02 22.72 0.16 -10.90 16 19 C 0.11 5.54 5.04 -21.10 -0.11 5.44 16 20 C -0.44 -25.71 8.32 23.41 0.19 -25.51 16 21 H 0.08 5.17 5.95 -2.91 -0.02 5.16 16 22 C 0.04 2.23 5.47 85.37 0.47 2.69 16 23 N -0.83 -45.81 13.92 21.88 0.30 -45.50 16 24 Si 0.96 41.70 24.51 68.60 1.68 43.38 16 25 H -0.24 -9.43 6.74 99.48 0.67 -8.76 16 26 H -0.25 -11.18 6.75 99.48 0.67 -10.51 16 27 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.69 6.43 -2.39 -0.02 0.67 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.69 6.43 -2.39 -0.02 0.68 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 1.22 6.43 -2.39 -0.02 1.21 16 40 H 0.06 1.23 6.43 -2.39 -0.02 1.21 16 41 H 0.42 5.23 8.47 -92.70 -0.79 4.45 16 42 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.13 4.90 7.61 -2.91 -0.02 4.88 16 45 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.11 4.91 4.95 -2.91 -0.01 4.90 16 48 H 0.30 14.55 8.29 -92.71 -0.77 13.78 16 Total: -1.00 -72.85 388.07 4.83 -68.02 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.12 Total: 26.88 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.23 Total: -11.66 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -2.27 Total: -61.68 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: 0.07 Total: -64.94 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.68 Total: 43.38 kcal Total: -72.85 4.83 -68.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061084944.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.432 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds