Wall clock time and date at job start Tue Mar 31 2020 18:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.50708 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.84796 * 270.27845 * 4 3 2 6 6 C 1.37938 * 120.14963 * 180.28044 * 5 4 3 7 7 C 1.39633 * 119.84852 * 359.44003 * 6 5 4 8 8 C 1.47723 * 120.15316 * 180.30600 * 7 6 5 9 9 O 1.21471 * 119.99606 * 359.97438 * 8 7 6 10 10 O 1.34709 * 120.00179 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99971 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47080 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00062 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00347 * 359.97438 * 14 12 11 16 16 C 1.53007 * 109.46983 * 89.99784 * 15 14 12 17 17 C 1.46505 * 119.99941 * 179.97438 * 14 12 11 18 18 C 1.50702 * 109.46901 * 89.99939 * 17 14 12 19 19 H 1.07997 * 120.00363 * 0.02562 * 18 17 14 20 20 C 1.37873 * 119.99917 * 179.97438 * 18 17 14 21 21 N 1.31520 * 120.00193 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00284 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47309 * 89.99542 * 22 20 18 24 24 H 1.48499 * 109.47200 * 210.00250 * 22 20 18 25 25 H 1.48508 * 109.46847 * 329.99950 * 22 20 18 26 26 C 1.39630 * 119.69783 * 0.27990 * 7 6 5 27 27 C 1.37948 * 119.84903 * 359.97438 * 26 7 6 28 28 H 1.09005 * 109.46771 * 60.00166 * 1 2 3 29 29 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46869 * 300.00682 * 1 2 3 31 31 H 1.09002 * 109.47312 * 239.99940 * 2 1 3 32 32 H 1.09000 * 109.46853 * 119.99351 * 2 1 3 33 33 H 1.09000 * 109.47854 * 59.99921 * 3 2 1 34 34 H 1.08996 * 109.47465 * 299.99589 * 3 2 1 35 35 H 1.07998 * 119.92432 * 0.02562 * 5 4 3 36 36 H 1.08002 * 120.07979 * 179.72201 * 6 5 4 37 37 H 1.09004 * 109.47492 * 299.99973 * 11 10 8 38 38 H 1.09004 * 109.47185 * 60.00164 * 11 10 8 39 39 H 1.09001 * 109.47580 * 210.00364 * 15 14 12 40 40 H 1.09003 * 109.47232 * 330.00609 * 15 14 12 41 41 H 1.08998 * 109.46729 * 60.00764 * 16 15 14 42 42 H 1.08999 * 109.46785 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.46995 * 300.00508 * 16 15 14 44 44 H 1.09000 * 109.47176 * 209.99410 * 17 14 12 45 45 H 1.08992 * 109.47136 * 330.00262 * 17 14 12 46 46 H 0.97000 * 120.00477 * 180.02562 * 21 20 18 47 47 H 1.08004 * 120.07581 * 180.02562 * 26 7 6 48 48 H 1.07997 * 119.92171 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2353 1.4369 1.2011 6 6 5.6146 1.4428 1.2090 7 6 6.3165 1.4425 0.0019 8 6 7.7937 1.4420 0.0024 9 8 8.4006 1.4421 1.0547 10 8 8.4678 1.4412 -1.1639 11 6 9.9177 1.4413 -1.0873 12 6 10.4943 1.4411 -2.4796 13 8 9.7559 1.4404 -3.4417 14 7 11.8305 1.4405 -2.6556 15 6 12.7225 1.4407 -1.4935 16 6 13.0325 -0.0018 -1.0882 17 6 12.3911 1.4397 -4.0091 18 6 12.5837 2.8603 -4.4738 19 1 12.3158 3.6816 -3.8257 20 6 13.1029 3.1116 -5.7261 21 7 13.2715 4.3513 -6.1315 22 14 13.5669 1.6912 -6.8471 23 1 12.3965 1.3153 -7.6802 24 1 14.6899 2.1020 -7.7276 25 1 13.9832 0.5270 -6.0244 26 6 5.6157 1.4423 -1.2058 27 6 4.2362 1.4418 -1.1992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.6912 1.4321 2.1340 36 1 6.1506 1.4429 2.1466 37 1 10.2535 2.3316 -0.5555 38 1 10.2534 0.5516 -0.5544 39 1 13.6499 1.9542 -1.7472 40 1 12.2378 1.9550 -0.6635 41 1 13.5172 -0.5160 -1.9181 42 1 13.6958 -0.0016 -0.2233 43 1 12.1051 -0.5151 -0.8344 44 1 13.3522 0.9257 -4.0041 45 1 11.7077 0.9259 -4.6851 46 1 13.6364 4.5281 -7.0127 47 1 6.1524 1.4418 -2.1431 48 1 3.6930 1.4421 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064221395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:02 Heat of formation + Delta-G solvation = -106.901863 kcal Electronic energy + Delta-G solvation = -27644.224217 eV Core-core repulsion = 23663.986692 eV Total energy + Delta-G solvation = -3980.237525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73027 -39.52543 -38.86715 -36.41939 -35.45130 -35.41055 -32.77622 -31.75358 -31.27641 -30.46637 -29.36278 -27.57442 -26.69841 -23.63217 -23.05808 -22.96291 -22.29440 -21.67442 -20.65800 -18.78129 -18.16299 -17.14012 -16.96807 -16.53391 -16.30297 -15.88649 -15.75255 -15.38616 -14.73157 -14.67236 -14.58007 -14.04827 -14.03689 -13.73333 -13.57327 -13.49708 -13.23590 -12.83967 -12.66210 -12.47434 -12.39790 -12.38803 -12.20463 -11.85170 -11.60971 -11.48169 -11.41777 -11.37752 -11.03538 -11.02700 -10.90795 -10.64079 -10.59139 -10.52484 -10.18690 -9.57414 -9.26168 -9.12801 -9.07728 -8.61047 -7.83639 -6.10650 -4.10071 0.46397 1.11292 2.38388 2.39895 3.15294 3.27831 3.33646 3.35611 3.52784 3.75114 4.28544 4.37538 4.43089 4.60860 4.65660 4.70564 4.73489 4.78511 5.00479 5.01184 5.08497 5.10969 5.15978 5.22464 5.30607 5.33527 5.34262 5.41186 5.49004 5.52916 5.65268 5.67747 5.71240 5.75281 5.87718 5.92162 5.99831 6.08757 6.09688 6.26067 6.31701 6.34845 6.58872 6.64586 6.88480 7.23348 7.56902 7.66221 8.09727 8.42998 8.80214 8.92944 9.48756 11.02564 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.002187 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.947161 B =12799.301508 C =13842.746286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.049 4.049 5 C -0.133 4.133 6 C -0.052 4.052 7 C -0.128 4.128 8 C 0.508 3.492 9 O -0.511 6.511 10 O -0.324 6.324 11 C 0.052 3.948 12 C 0.510 3.490 13 O -0.518 6.518 14 N -0.587 5.587 15 C 0.101 3.899 16 C -0.171 4.171 17 C 0.218 3.782 18 C -0.531 4.531 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.053 4.053 27 C -0.132 4.132 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.265 0.735 47 H 0.145 0.855 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 -9.158 16.414 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.049 4.049 5 C -0.151 4.151 6 C -0.070 4.070 7 C -0.129 4.129 8 C 0.354 3.646 9 O -0.401 6.401 10 O -0.239 6.239 11 C -0.026 4.026 12 C 0.295 3.705 13 O -0.394 6.394 14 N -0.321 5.321 15 C -0.023 4.023 16 C -0.229 4.229 17 C 0.098 3.902 18 C -0.570 4.570 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.071 4.071 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.163 0.837 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.167 -9.045 16.003 26.557 hybrid contribution 0.630 -0.498 -0.516 0.954 sum -18.537 -9.543 15.487 25.972 Atomic orbital electron populations 1.21790 0.95503 1.01843 1.01920 1.21518 0.95833 0.95721 1.02675 1.20745 0.90381 0.97800 1.03421 1.20222 0.96072 0.95422 0.93195 1.20957 0.93441 1.02790 0.97951 1.21245 0.94013 0.94483 0.97229 1.19097 0.88923 1.09788 0.95126 1.21250 0.88930 0.72715 0.81751 1.90814 1.70202 1.46388 1.32668 1.86593 1.20800 1.83464 1.33072 1.22941 0.77216 1.04472 0.97941 1.19705 0.83102 0.78425 0.89277 1.90712 1.58407 1.48530 1.41706 1.47867 1.03900 1.71673 1.08633 1.21548 0.96074 0.96618 0.88048 1.22247 1.01565 0.97444 1.01692 1.19702 0.93660 0.98524 0.78299 1.21317 1.42776 0.91195 1.01675 0.90674 1.24856 0.95053 0.95611 0.97479 1.69897 1.45094 1.18664 1.19750 0.86848 0.78626 0.82880 0.81312 1.19861 1.21038 1.19054 1.21660 0.94369 0.92980 0.98097 1.21083 0.93822 1.02023 0.98024 0.92588 0.92580 0.92670 0.91591 0.91721 0.90635 0.90506 0.85170 0.84481 0.88365 0.88565 0.89152 0.91353 0.91971 0.91664 0.93025 0.94872 0.94408 0.92516 0.83710 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 3 C -0.09 -0.51 5.34 -27.88 -0.15 -0.66 16 4 C -0.05 -0.40 5.14 -104.52 -0.54 -0.94 16 5 C -0.13 -1.12 9.68 -39.64 -0.38 -1.51 16 6 C -0.05 -0.54 9.60 -39.17 -0.38 -0.92 16 7 C -0.13 -1.62 5.87 -104.98 -0.62 -2.24 16 8 C 0.51 7.71 7.90 34.61 0.27 7.98 16 9 O -0.51 -8.30 16.14 -19.24 -0.31 -8.61 16 10 O -0.32 -5.49 9.01 -47.20 -0.43 -5.92 16 11 C 0.05 0.84 4.51 36.00 0.16 1.00 16 12 C 0.51 10.57 7.75 -10.99 -0.09 10.48 16 13 O -0.52 -12.96 16.08 -14.11 -0.23 -13.18 16 14 N -0.59 -11.93 2.46 -175.06 -0.43 -12.36 16 15 C 0.10 1.54 5.93 -4.04 -0.02 1.52 16 16 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 17 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 18 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 19 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 22 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 26 C -0.05 -0.62 9.62 -39.17 -0.38 -0.99 16 27 C -0.13 -1.23 9.68 -39.64 -0.38 -1.61 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 37 H 0.10 1.47 7.40 -51.93 -0.38 1.08 16 38 H 0.10 1.34 7.18 -51.93 -0.37 0.96 16 39 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 40 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 44 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 45 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.15 1.79 7.61 -52.48 -0.40 1.39 16 48 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -35.00 403.77 -9.22 -44.21 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.65 Total: -1.15 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.37 Total: 0.93 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.34 Total: -39.10 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.96 Total: -27.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.00 -9.22 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064221395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.688 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds