Wall clock time and date at job start Tue Mar 31 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.50708 * 109.47208 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.84796 * 270.27845 * 4 3 2 6 6 C 1.37938 * 120.14963 * 180.28044 * 5 4 3 7 7 C 1.39633 * 119.84852 * 359.44003 * 6 5 4 8 8 C 1.47723 * 120.15316 * 180.30600 * 7 6 5 9 9 O 1.21471 * 119.99606 * 359.97438 * 8 7 6 10 10 O 1.34709 * 120.00179 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99971 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47080 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00062 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00347 * 359.97438 * 14 12 11 16 16 C 1.53007 * 109.46983 * 89.99784 * 15 14 12 17 17 C 1.46505 * 119.99941 * 179.97438 * 14 12 11 18 18 C 1.50702 * 109.46901 * 89.99939 * 17 14 12 19 19 H 1.07997 * 120.00363 * 0.02562 * 18 17 14 20 20 C 1.37873 * 119.99917 * 179.97438 * 18 17 14 21 21 N 1.31520 * 120.00193 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00284 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47309 * 89.99542 * 22 20 18 24 24 H 1.48499 * 109.47200 * 210.00250 * 22 20 18 25 25 H 1.48508 * 109.46847 * 329.99950 * 22 20 18 26 26 C 1.39630 * 119.69783 * 0.27990 * 7 6 5 27 27 C 1.37948 * 119.84903 * 359.97438 * 26 7 6 28 28 H 1.09005 * 109.46771 * 60.00166 * 1 2 3 29 29 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46869 * 300.00682 * 1 2 3 31 31 H 1.09002 * 109.47312 * 239.99940 * 2 1 3 32 32 H 1.09000 * 109.46853 * 119.99351 * 2 1 3 33 33 H 1.09000 * 109.47854 * 59.99921 * 3 2 1 34 34 H 1.08996 * 109.47465 * 299.99589 * 3 2 1 35 35 H 1.07998 * 119.92432 * 0.02562 * 5 4 3 36 36 H 1.08002 * 120.07979 * 179.72201 * 6 5 4 37 37 H 1.09004 * 109.47492 * 299.99973 * 11 10 8 38 38 H 1.09004 * 109.47185 * 60.00164 * 11 10 8 39 39 H 1.09001 * 109.47580 * 210.00364 * 15 14 12 40 40 H 1.09003 * 109.47232 * 330.00609 * 15 14 12 41 41 H 1.08998 * 109.46729 * 60.00764 * 16 15 14 42 42 H 1.08999 * 109.46785 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.46995 * 300.00508 * 16 15 14 44 44 H 1.09000 * 109.47176 * 209.99410 * 17 14 12 45 45 H 1.08992 * 109.47136 * 330.00262 * 17 14 12 46 46 H 0.97000 * 120.00477 * 180.02562 * 21 20 18 47 47 H 1.08004 * 120.07581 * 180.02562 * 26 7 6 48 48 H 1.07997 * 119.92171 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2353 1.4369 1.2011 6 6 5.6146 1.4428 1.2090 7 6 6.3165 1.4425 0.0019 8 6 7.7937 1.4420 0.0024 9 8 8.4006 1.4421 1.0547 10 8 8.4678 1.4412 -1.1639 11 6 9.9177 1.4413 -1.0873 12 6 10.4943 1.4411 -2.4796 13 8 9.7559 1.4404 -3.4417 14 7 11.8305 1.4405 -2.6556 15 6 12.7225 1.4407 -1.4935 16 6 13.0325 -0.0018 -1.0882 17 6 12.3911 1.4397 -4.0091 18 6 12.5837 2.8603 -4.4738 19 1 12.3158 3.6816 -3.8257 20 6 13.1029 3.1116 -5.7261 21 7 13.2715 4.3513 -6.1315 22 14 13.5669 1.6912 -6.8471 23 1 12.3965 1.3153 -7.6802 24 1 14.6899 2.1020 -7.7276 25 1 13.9832 0.5270 -6.0244 26 6 5.6157 1.4423 -1.2058 27 6 4.2362 1.4418 -1.1992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.6912 1.4321 2.1340 36 1 6.1506 1.4429 2.1466 37 1 10.2535 2.3316 -0.5555 38 1 10.2534 0.5516 -0.5544 39 1 13.6499 1.9542 -1.7472 40 1 12.2378 1.9550 -0.6635 41 1 13.5172 -0.5160 -1.9181 42 1 13.6958 -0.0016 -0.2233 43 1 12.1051 -0.5151 -0.8344 44 1 13.3522 0.9257 -4.0041 45 1 11.7077 0.9259 -4.6851 46 1 13.6364 4.5281 -7.0127 47 1 6.1524 1.4418 -2.1431 48 1 3.6930 1.4421 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064221395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:01 Heat of formation + Delta-G solvation = -125.838908 kcal Electronic energy + Delta-G solvation = -27645.045388 eV Core-core repulsion = 23663.986692 eV Total energy + Delta-G solvation = -3981.058697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.90429 -40.79928 -40.01243 -37.68460 -37.03930 -36.01271 -34.89549 -32.51297 -32.05533 -32.00834 -30.75701 -28.94516 -27.72887 -24.76241 -24.39638 -23.87002 -23.67484 -22.37600 -21.50432 -20.30306 -19.32361 -19.13457 -18.34498 -17.86607 -17.70028 -17.15440 -16.48835 -16.43279 -16.33558 -15.90368 -15.42815 -15.25849 -14.92093 -14.79844 -14.63420 -14.48621 -14.43862 -14.23593 -13.97700 -13.77881 -13.60145 -13.42129 -13.20624 -13.11735 -12.88544 -12.58690 -12.44399 -12.17548 -12.11714 -12.06867 -12.03561 -12.03529 -11.83022 -11.75607 -11.69539 -11.47118 -10.84877 -10.82234 -10.03580 -9.84941 -9.55553 -8.34971 -6.40838 -0.42227 0.34531 1.15261 1.33084 1.36120 1.37001 1.45220 1.54205 2.29529 2.30810 2.70136 2.98972 3.35069 3.48120 3.76212 3.77493 3.89594 3.91960 3.95603 4.11673 4.16423 4.24816 4.34501 4.36284 4.40081 4.52707 4.56545 4.73555 4.78130 4.79559 4.84154 4.93453 4.94702 4.97448 5.01338 5.03654 5.05968 5.25539 5.27250 5.28073 5.34355 5.34500 5.43309 5.49630 5.54194 5.58438 5.85096 6.19901 6.43853 6.55091 6.60666 7.12579 7.26507 8.81829 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.002187 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.947161 B =12799.301508 C =13842.746286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.040 4.040 5 C -0.127 4.127 6 C -0.054 4.054 7 C -0.154 4.154 8 C 0.509 3.491 9 O -0.526 6.526 10 O -0.344 6.344 11 C 0.061 3.939 12 C 0.502 3.498 13 O -0.573 6.573 14 N -0.591 5.591 15 C 0.092 3.908 16 C -0.162 4.162 17 C 0.227 3.773 18 C -0.539 4.539 19 H 0.029 0.971 20 C 0.011 3.989 21 N -0.944 5.944 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.275 1.275 25 H -0.236 1.236 26 C -0.068 4.068 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.021 0.979 46 H 0.269 0.731 47 H 0.127 0.873 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.131 -11.081 18.261 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.121 4.121 4 C -0.040 4.040 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.155 4.155 8 C 0.356 3.644 9 O -0.417 6.417 10 O -0.260 6.260 11 C -0.016 4.016 12 C 0.290 3.710 13 O -0.453 6.453 14 N -0.324 5.324 15 C -0.030 4.030 16 C -0.220 4.220 17 C 0.105 3.895 18 C -0.578 4.578 19 H 0.047 0.953 20 C -0.187 4.187 21 N -0.584 5.584 22 Si 0.771 3.229 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.086 4.086 27 C -0.152 4.152 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.145 0.855 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.208 -10.979 17.912 29.150 hybrid contribution 0.851 0.197 -1.014 1.338 sum -19.357 -10.782 16.898 27.866 Atomic orbital electron populations 1.21779 0.94739 1.02067 1.02354 1.21501 0.96460 0.95318 1.02349 1.20806 0.88344 0.98261 1.04639 1.20558 0.97508 0.93339 0.92598 1.21312 0.92605 1.01148 0.99350 1.21400 0.94986 0.94330 0.96487 1.19148 0.87510 1.12408 0.96418 1.21698 0.89812 0.71994 0.80936 1.90785 1.70650 1.47507 1.32751 1.86600 1.21018 1.83891 1.34468 1.22854 0.77338 1.06543 0.94829 1.20469 0.82918 0.77054 0.90609 1.90674 1.59720 1.51049 1.43826 1.47961 1.04669 1.70977 1.08743 1.21904 0.95040 0.99234 0.86828 1.22181 1.02525 0.94772 1.02564 1.19387 0.94344 0.95498 0.80295 1.21545 1.42463 0.92333 1.01449 0.95269 1.25865 0.94912 0.98703 0.99267 1.70050 1.46435 1.21324 1.20569 0.85710 0.78297 0.79854 0.79064 1.20191 1.19979 1.15875 1.21598 0.95474 0.94312 0.97202 1.21303 0.92878 1.01463 0.99523 0.92443 0.92519 0.91963 0.92378 0.91680 0.89001 0.89799 0.82065 0.83982 0.86867 0.85550 0.89885 0.88955 0.92768 0.88486 0.92345 0.92542 0.96057 0.92222 0.85514 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.05 5.92 30.60 0.18 -0.87 16 3 C -0.08 -0.74 5.34 29.85 0.16 -0.58 16 4 C -0.04 -0.57 5.14 -19.80 -0.10 -0.67 16 5 C -0.13 -1.82 9.68 22.23 0.22 -1.60 16 6 C -0.05 -1.07 9.60 22.54 0.22 -0.85 16 7 C -0.15 -3.93 5.87 -20.10 -0.12 -4.05 16 8 C 0.51 15.62 7.90 70.33 0.56 16.17 16 9 O -0.53 -16.85 16.14 19.93 0.32 -16.52 16 10 O -0.34 -11.97 9.01 -49.80 -0.45 -12.42 16 11 C 0.06 1.97 4.51 71.23 0.32 2.29 16 12 C 0.50 21.24 7.75 87.66 0.68 21.92 16 13 O -0.57 -29.97 16.08 15.76 0.25 -29.72 16 14 N -0.59 -24.10 2.46 -826.14 -2.03 -26.13 16 15 C 0.09 2.68 5.93 86.38 0.51 3.19 16 16 C -0.16 -3.59 10.24 71.98 0.74 -2.85 16 17 C 0.23 11.00 4.23 85.63 0.36 11.36 16 18 C -0.54 -31.84 9.94 25.60 0.25 -31.59 16 19 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 20 C 0.01 0.63 5.47 84.65 0.46 1.10 16 21 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 22 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 26 C -0.07 -1.62 9.62 22.54 0.22 -1.40 16 27 C -0.13 -2.39 9.68 22.23 0.22 -2.18 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.14 2.62 7.65 -2.91 -0.02 2.60 16 37 H 0.11 3.30 7.40 -2.39 -0.02 3.28 16 38 H 0.13 3.29 7.18 -2.39 -0.02 3.27 16 39 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 40 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.22 7.22 -2.39 -0.02 1.21 16 44 H 0.06 2.48 7.13 -2.39 -0.02 2.46 16 45 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 46 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.13 3.42 7.61 -2.91 -0.02 3.40 16 48 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -80.32 403.77 6.75 -73.57 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.88 Total: 15.58 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.58 Total: 9.01 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.73 Total: -85.71 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: 0.13 Total: -58.66 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -80.32 6.75 -73.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064221395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.269 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds