Wall clock time and date at job start Tue Mar 31 2020 17:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00085 * 2 1 4 4 C 1.52997 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46788 * 64.99944 * 4 3 2 6 6 C 1.46500 * 120.00057 * 269.99597 * 5 4 3 7 7 C 1.50701 * 109.47373 * 270.00288 * 6 5 4 8 8 H 1.07998 * 119.99702 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00187 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99900 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99941 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46878 * 90.00101 * 11 9 7 13 13 H 1.48496 * 109.46982 * 209.99926 * 11 9 7 14 14 H 1.48497 * 109.47265 * 330.00259 * 11 9 7 15 15 C 1.34783 * 119.99950 * 90.00183 * 5 4 3 16 16 O 1.21282 * 119.99765 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00205 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47012 * 180.02562 * 17 15 5 19 19 C 1.50698 * 109.47015 * 180.02562 * 18 17 15 20 20 O 1.21262 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.47168 * 120.00520 * 180.02562 * 19 18 17 22 22 C 1.39851 * 120.17582 * 180.02562 * 21 19 18 23 23 C 1.37885 * 119.82281 * 180.29957 * 22 21 19 24 24 C 1.38402 * 120.17407 * 359.43610 * 23 22 21 25 25 C 1.50696 * 119.82806 * 180.28065 * 24 23 22 26 26 C 1.38410 * 120.34833 * 0.56494 * 24 23 22 27 27 C 1.37892 * 120.16928 * 359.71584 * 26 24 23 28 28 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46898 * 299.99829 * 1 2 3 30 30 H 1.08991 * 109.47326 * 60.00464 * 1 2 3 31 31 H 1.09007 * 109.46925 * 59.99587 * 3 2 1 32 32 H 1.09006 * 109.46753 * 300.00540 * 3 2 1 33 33 H 1.08992 * 109.47105 * 304.99601 * 4 3 2 34 34 H 1.09003 * 109.46852 * 184.99198 * 4 3 2 35 35 H 1.08995 * 109.47117 * 30.00398 * 6 5 4 36 36 H 1.08998 * 109.46863 * 150.00343 * 6 5 4 37 37 H 0.96995 * 119.99455 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46835 * 60.00348 * 17 15 5 39 39 H 1.08995 * 109.47429 * 300.00607 * 17 15 5 40 40 H 1.08994 * 109.47429 * 60.00049 * 18 17 15 41 41 H 1.09003 * 109.47138 * 300.00128 * 18 17 15 42 42 H 1.08002 * 120.08457 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.91348 * 179.72125 * 23 22 21 44 44 H 1.08999 * 109.47370 * 270.27837 * 25 24 23 45 45 H 1.09002 * 109.46875 * 30.28498 * 25 24 23 46 46 H 1.09007 * 109.47167 * 150.27884 * 25 24 23 47 47 H 1.07999 * 119.91764 * 179.69813 * 26 24 23 48 48 H 1.08001 * 120.08323 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.5018 -1.2980 -0.9412 8 1 6.2201 -0.5461 -0.6497 9 6 5.8612 -2.6291 -0.9472 10 7 7.0788 -2.9830 -0.5984 11 14 4.6181 -3.9299 -1.4493 12 1 4.7034 -4.1566 -2.9144 13 1 4.9122 -5.1977 -0.7343 14 1 3.2506 -3.4694 -1.0985 15 6 4.2633 1.3330 -2.3200 16 8 4.6281 0.8191 -3.3562 17 6 4.1295 2.8312 -2.2283 18 6 4.5118 3.4605 -3.5694 19 6 4.3786 4.9587 -3.4775 20 8 4.0134 5.4725 -2.4416 21 6 4.6906 5.7984 -4.6452 22 6 4.5688 7.1892 -4.5636 23 6 4.8571 7.9685 -5.6640 24 6 5.2773 7.3786 -6.8434 25 6 5.5964 8.2382 -8.0393 26 6 5.4004 6.0028 -6.9321 27 6 5.1103 5.2094 -5.8422 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9784 2.1767 0.0901 35 1 3.3859 -1.3631 -0.6713 36 1 3.9139 -1.2122 -2.3644 37 1 7.3317 -3.9194 -0.6030 38 1 4.7909 3.2079 -1.4481 39 1 3.0986 3.0899 -1.9867 40 1 3.8502 3.0837 -4.3493 41 1 5.5427 3.2019 -3.8114 42 1 4.2454 7.6512 -3.6426 43 1 4.7591 9.0423 -5.6040 44 1 4.6957 8.3778 -8.6371 45 1 5.9629 9.2079 -7.7023 46 1 6.3615 7.7506 -8.6435 47 1 5.7243 5.5495 -7.8573 48 1 5.2065 4.1360 -5.9131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:13 Heat of formation + Delta-G solvation = -98.542878 kcal Electronic energy + Delta-G solvation = -28121.850724 eV Core-core repulsion = 24141.975672 eV Total energy + Delta-G solvation = -3979.875052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34143 -39.28196 -38.47748 -37.56177 -34.95008 -33.41456 -32.85984 -32.30710 -31.22044 -29.81032 -28.46212 -27.57782 -26.05185 -25.27844 -22.90955 -22.72875 -22.57260 -21.54375 -19.68122 -18.41850 -17.37863 -16.88534 -16.64170 -16.08087 -15.90093 -15.71494 -15.54417 -15.35395 -15.11040 -14.80140 -14.35799 -14.22084 -14.06551 -13.96314 -13.82304 -13.76196 -13.01660 -12.71232 -12.58008 -12.53497 -12.18984 -12.04208 -11.94032 -11.91631 -11.72808 -11.71095 -11.43903 -11.25125 -11.10617 -10.92802 -10.74544 -10.35935 -10.04342 -9.78923 -9.51885 -9.45089 -9.28176 -9.00294 -8.98019 -8.49442 -7.64978 -6.00329 -3.97714 0.42610 1.10122 2.23949 3.35375 3.37051 3.42520 3.47535 3.52607 3.65420 3.96898 4.07821 4.44640 4.49056 4.50506 4.68667 4.78998 4.90888 5.04972 5.08809 5.14373 5.18735 5.24973 5.27727 5.33928 5.35176 5.38827 5.43028 5.46193 5.49621 5.58311 5.63351 5.69150 5.73014 5.74281 5.81029 5.96818 6.00211 6.06870 6.14623 6.21523 6.23270 6.60742 6.96056 7.09849 7.33168 7.41224 7.42476 7.72915 8.32740 8.55707 8.98065 9.04498 9.61107 11.13182 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.002600 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.686774 B =10768.319496 C =12093.427107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.584 5.584 6 C 0.219 3.781 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.506 3.494 16 O -0.543 6.543 17 C -0.132 4.132 18 C -0.150 4.150 19 C 0.399 3.601 20 O -0.457 6.457 21 C -0.174 4.174 22 C -0.059 4.059 23 C -0.138 4.138 24 C -0.058 4.058 25 C -0.120 4.120 26 C -0.135 4.135 27 C -0.065 4.065 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.129 0.871 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 21.617 -8.519 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.314 5.314 6 C 0.098 3.902 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.293 3.707 16 O -0.421 6.421 17 C -0.172 4.172 18 C -0.187 4.187 19 C 0.277 3.723 20 O -0.332 6.332 21 C -0.175 4.175 22 C -0.077 4.077 23 C -0.156 4.156 24 C -0.058 4.058 25 C -0.176 4.176 26 C -0.153 4.153 27 C -0.083 4.083 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.147 0.853 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.262 21.251 -8.482 24.685 hybrid contribution -0.699 -0.543 -0.195 0.907 sum -9.962 20.708 -8.677 24.563 Atomic orbital electron populations 1.22703 0.81983 1.02502 0.99330 1.88059 1.18810 1.27327 1.95204 1.23142 0.95293 0.85198 0.99836 1.21565 0.91077 0.99469 0.89275 1.47832 1.64429 1.08916 1.10267 1.19680 0.97637 0.75027 0.97826 1.21371 0.96193 0.93505 1.45303 0.90929 1.24833 0.95161 0.98358 0.94703 1.69906 1.18217 1.17177 1.48705 0.86864 0.82554 0.81325 0.79141 1.20107 1.21252 1.18640 1.20319 0.77991 0.88449 0.83980 1.90656 1.46857 1.75133 1.29497 1.21523 1.03893 0.93415 0.98402 1.21771 1.05710 0.91674 0.99560 1.22610 0.72335 0.91339 0.86025 1.90498 1.35007 1.76901 1.30842 1.20549 1.06289 0.94620 0.96046 1.21418 0.94969 0.92622 0.98671 1.21014 1.01761 1.00049 0.92729 1.20225 0.95851 0.94323 0.95428 1.20883 1.02134 0.99128 0.95493 1.21070 1.02082 0.93027 0.99112 1.21604 0.94267 1.00792 0.91621 0.89897 0.94481 0.94531 0.92753 0.93569 0.88742 0.89490 0.93960 0.95007 0.92720 0.88701 0.89225 0.87554 0.87235 0.84932 0.85558 0.90734 0.91267 0.91136 0.85307 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.19 9.53 -35.23 -0.34 -6.52 16 3 C 0.04 0.60 6.28 37.16 0.23 0.84 16 4 C 0.11 1.80 5.62 -4.05 -0.02 1.77 16 5 N -0.58 -12.21 2.42 -175.07 -0.42 -12.64 16 6 C 0.22 5.54 4.05 -5.19 -0.02 5.52 16 7 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 11 Si 0.87 22.28 27.47 -169.99 -4.67 17.61 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 15 C 0.51 10.15 7.67 -10.98 -0.08 10.07 16 16 O -0.54 -12.95 15.56 5.56 0.09 -12.86 16 17 C -0.13 -1.95 3.54 -27.88 -0.10 -2.05 16 18 C -0.15 -1.95 3.60 -27.88 -0.10 -2.05 16 19 C 0.40 4.98 7.12 -30.69 -0.22 4.76 16 20 O -0.46 -6.62 15.98 5.57 0.09 -6.53 16 21 C -0.17 -1.93 5.87 -105.06 -0.62 -2.54 16 22 C -0.06 -0.59 9.60 -39.11 -0.38 -0.97 16 23 C -0.14 -1.15 9.68 -39.65 -0.38 -1.54 16 24 C -0.06 -0.46 5.89 -104.50 -0.62 -1.08 16 25 C -0.12 -0.63 10.00 36.00 0.36 -0.27 16 26 C -0.13 -1.14 9.68 -39.64 -0.38 -1.53 16 27 C -0.06 -0.63 9.47 -39.10 -0.37 -1.00 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 7.30 -51.93 -0.38 0.23 16 33 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 34 H 0.09 1.16 6.44 -51.93 -0.33 0.83 16 35 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.09 1.34 7.36 -51.93 -0.38 0.95 16 39 H 0.09 1.18 7.22 -51.93 -0.37 0.80 16 40 H 0.11 1.32 8.04 -51.93 -0.42 0.90 16 41 H 0.11 1.45 8.05 -51.93 -0.42 1.03 16 42 H 0.13 1.29 7.65 -52.49 -0.40 0.89 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 46 H 0.07 0.32 8.08 -51.92 -0.42 -0.10 16 47 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.14 1.21 7.05 -52.49 -0.37 0.84 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -36.76 399.70 -8.04 -44.80 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.56 Total: -0.04 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.02 Total: -2.29 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.35 Total: -40.18 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.16 Total: -25.92 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.76 -8.04 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.746 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds