Wall clock time and date at job start Tue Mar 31 2020 17:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00085 * 2 1 4 4 C 1.52997 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46788 * 64.99944 * 4 3 2 6 6 C 1.46500 * 120.00057 * 269.99597 * 5 4 3 7 7 C 1.50701 * 109.47373 * 270.00288 * 6 5 4 8 8 H 1.07998 * 119.99702 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00187 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99900 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99941 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46878 * 90.00101 * 11 9 7 13 13 H 1.48496 * 109.46982 * 209.99926 * 11 9 7 14 14 H 1.48497 * 109.47265 * 330.00259 * 11 9 7 15 15 C 1.34783 * 119.99950 * 90.00183 * 5 4 3 16 16 O 1.21282 * 119.99765 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00205 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47012 * 180.02562 * 17 15 5 19 19 C 1.50698 * 109.47015 * 180.02562 * 18 17 15 20 20 O 1.21262 * 120.00004 * 359.97438 * 19 18 17 21 21 C 1.47168 * 120.00520 * 180.02562 * 19 18 17 22 22 C 1.39851 * 120.17582 * 180.02562 * 21 19 18 23 23 C 1.37885 * 119.82281 * 180.29957 * 22 21 19 24 24 C 1.38402 * 120.17407 * 359.43610 * 23 22 21 25 25 C 1.50696 * 119.82806 * 180.28065 * 24 23 22 26 26 C 1.38410 * 120.34833 * 0.56494 * 24 23 22 27 27 C 1.37892 * 120.16928 * 359.71584 * 26 24 23 28 28 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46898 * 299.99829 * 1 2 3 30 30 H 1.08991 * 109.47326 * 60.00464 * 1 2 3 31 31 H 1.09007 * 109.46925 * 59.99587 * 3 2 1 32 32 H 1.09006 * 109.46753 * 300.00540 * 3 2 1 33 33 H 1.08992 * 109.47105 * 304.99601 * 4 3 2 34 34 H 1.09003 * 109.46852 * 184.99198 * 4 3 2 35 35 H 1.08995 * 109.47117 * 30.00398 * 6 5 4 36 36 H 1.08998 * 109.46863 * 150.00343 * 6 5 4 37 37 H 0.96995 * 119.99455 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.46835 * 60.00348 * 17 15 5 39 39 H 1.08995 * 109.47429 * 300.00607 * 17 15 5 40 40 H 1.08994 * 109.47429 * 60.00049 * 18 17 15 41 41 H 1.09003 * 109.47138 * 300.00128 * 18 17 15 42 42 H 1.08002 * 120.08457 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.91348 * 179.72125 * 23 22 21 44 44 H 1.08999 * 109.47370 * 270.27837 * 25 24 23 45 45 H 1.09002 * 109.46875 * 30.28498 * 25 24 23 46 46 H 1.09007 * 109.47167 * 150.27884 * 25 24 23 47 47 H 1.07999 * 119.91764 * 179.69813 * 26 24 23 48 48 H 1.08001 * 120.08323 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.5018 -1.2980 -0.9412 8 1 6.2201 -0.5461 -0.6497 9 6 5.8612 -2.6291 -0.9472 10 7 7.0788 -2.9830 -0.5984 11 14 4.6181 -3.9299 -1.4493 12 1 4.7034 -4.1566 -2.9144 13 1 4.9122 -5.1977 -0.7343 14 1 3.2506 -3.4694 -1.0985 15 6 4.2633 1.3330 -2.3200 16 8 4.6281 0.8191 -3.3562 17 6 4.1295 2.8312 -2.2283 18 6 4.5118 3.4605 -3.5694 19 6 4.3786 4.9587 -3.4775 20 8 4.0134 5.4725 -2.4416 21 6 4.6906 5.7984 -4.6452 22 6 4.5688 7.1892 -4.5636 23 6 4.8571 7.9685 -5.6640 24 6 5.2773 7.3786 -6.8434 25 6 5.5964 8.2382 -8.0393 26 6 5.4004 6.0028 -6.9321 27 6 5.1103 5.2094 -5.8422 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9784 2.1767 0.0901 35 1 3.3859 -1.3631 -0.6713 36 1 3.9139 -1.2122 -2.3644 37 1 7.3317 -3.9194 -0.6030 38 1 4.7909 3.2079 -1.4481 39 1 3.0986 3.0899 -1.9867 40 1 3.8502 3.0837 -4.3493 41 1 5.5427 3.2019 -3.8114 42 1 4.2454 7.6512 -3.6426 43 1 4.7591 9.0423 -5.6040 44 1 4.6957 8.3778 -8.6371 45 1 5.9629 9.2079 -7.7023 46 1 6.3615 7.7506 -8.6435 47 1 5.7243 5.5495 -7.8573 48 1 5.2065 4.1360 -5.9131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:12 Heat of formation + Delta-G solvation = -121.660284 kcal Electronic energy + Delta-G solvation = -28122.853170 eV Core-core repulsion = 24141.975672 eV Total energy + Delta-G solvation = -3980.877498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33899 -40.64844 -39.36479 -38.75648 -36.59298 -34.83053 -34.24197 -33.57809 -31.96559 -31.35568 -29.72630 -28.72799 -27.09286 -26.51969 -24.18367 -23.90896 -23.59659 -22.72082 -20.59498 -19.91167 -19.10785 -18.51832 -17.78839 -17.32490 -17.05827 -16.96392 -16.54503 -16.43374 -16.17534 -16.03727 -15.79127 -15.40646 -15.20429 -14.84003 -14.66009 -14.58517 -14.44323 -14.24758 -13.94330 -13.77761 -13.46255 -13.09396 -13.00572 -12.92566 -12.83640 -12.81062 -12.64478 -12.54670 -12.45092 -12.22131 -11.99594 -11.93172 -11.90846 -11.72120 -10.81752 -10.78217 -10.67096 -10.54143 -9.96925 -9.68816 -9.39335 -8.32428 -6.35858 -0.35734 0.41820 1.33133 1.35464 1.37642 1.46899 1.78108 2.24251 2.32786 2.80253 2.92816 2.98192 3.03212 3.59293 3.84078 3.87201 3.95351 4.03083 4.03491 4.17288 4.20855 4.27047 4.41417 4.41584 4.48683 4.52613 4.54746 4.60806 4.62237 4.78946 4.81821 4.82571 4.85666 4.86136 4.92563 4.95092 5.00391 5.02597 5.09221 5.23443 5.34188 5.41481 5.48956 5.58948 5.64497 5.95640 6.25801 6.31088 6.44868 6.64635 6.73364 7.23578 7.41223 8.84497 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.002600 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.686774 B =10768.319496 C =12093.427107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.593 5.593 6 C 0.235 3.765 7 C -0.532 4.532 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.944 3.056 12 H -0.274 1.274 13 H -0.274 1.274 14 H -0.244 1.244 15 C 0.498 3.502 16 O -0.589 6.589 17 C -0.119 4.119 18 C -0.147 4.147 19 C 0.409 3.591 20 O -0.481 6.481 21 C -0.196 4.196 22 C -0.069 4.069 23 C -0.140 4.140 24 C -0.056 4.056 25 C -0.119 4.119 26 C -0.142 4.142 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.150 0.850 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.148 0.852 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 23.369 -9.435 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.030 4.030 4 C -0.019 4.019 5 N -0.323 5.323 6 C 0.112 3.888 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.199 1.199 14 H -0.168 1.168 15 C 0.288 3.712 16 O -0.470 6.470 17 C -0.158 4.158 18 C -0.184 4.184 19 C 0.289 3.711 20 O -0.359 6.359 21 C -0.197 4.197 22 C -0.087 4.087 23 C -0.158 4.158 24 C -0.056 4.056 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.090 4.090 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.166 0.834 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.237 23.044 -9.372 27.297 hybrid contribution -0.013 -0.990 0.061 0.992 sum -11.249 22.054 -9.311 26.450 Atomic orbital electron populations 1.22875 0.79920 1.03257 1.00852 1.87988 1.21212 1.28809 1.95557 1.23140 0.93006 0.84874 1.01961 1.21876 0.93453 1.00150 0.86453 1.47911 1.64661 1.07418 1.12334 1.19214 0.94984 0.78277 0.96315 1.21595 0.97467 0.92923 1.45080 0.95165 1.25789 0.97290 1.00936 0.94582 1.70046 1.20430 1.18049 1.50054 0.85755 0.80492 0.78333 0.78674 1.19946 1.19932 1.16761 1.21225 0.76539 0.90504 0.82949 1.90623 1.48774 1.76422 1.31222 1.21471 1.05591 0.89000 0.99750 1.21740 1.05530 0.92348 0.98813 1.22558 0.71471 0.90848 0.86220 1.90483 1.36575 1.77081 1.31711 1.20477 1.08314 0.94991 0.95937 1.21539 0.95366 0.92430 0.99403 1.21309 1.01057 1.01170 0.92255 1.20618 0.94253 0.94505 0.96193 1.20955 1.02935 0.99168 0.94491 1.21370 1.01713 0.93462 0.99423 1.21729 0.94338 1.01225 0.91732 0.89680 0.92227 0.93645 0.89227 0.92569 0.90473 0.86503 0.93439 0.96934 0.92338 0.87747 0.86861 0.86973 0.87843 0.85092 0.83251 0.89604 0.90137 0.90290 0.83395 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -13.01 9.53 -148.98 -1.42 -14.43 16 3 C 0.05 1.21 6.28 71.98 0.45 1.66 16 4 C 0.10 3.27 5.62 86.38 0.49 3.76 16 5 N -0.59 -25.03 2.42 -826.18 -2.00 -27.03 16 6 C 0.23 12.08 4.05 85.63 0.35 12.43 16 7 C -0.53 -32.39 9.94 25.60 0.25 -32.13 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.72 5.47 84.65 0.46 1.18 16 10 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 11 Si 0.94 46.55 27.47 68.60 1.88 48.43 16 12 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.24 -11.24 6.54 99.48 0.65 -10.59 16 15 C 0.50 20.22 7.67 87.66 0.67 20.89 16 16 O -0.59 -28.90 15.56 -3.04 -0.05 -28.94 16 17 C -0.12 -3.40 3.54 29.85 0.11 -3.29 16 18 C -0.15 -3.80 3.60 29.85 0.11 -3.69 16 19 C 0.41 10.05 7.12 28.03 0.20 10.25 16 20 O -0.48 -13.59 15.98 -2.97 -0.05 -13.64 16 21 C -0.20 -4.25 5.87 -20.15 -0.12 -4.37 16 22 C -0.07 -1.34 9.60 22.58 0.22 -1.12 16 23 C -0.14 -2.08 9.68 22.23 0.22 -1.86 16 24 C -0.06 -0.76 5.89 -19.79 -0.12 -0.87 16 25 C -0.12 -0.90 10.00 71.23 0.71 -0.18 16 26 C -0.14 -2.17 9.68 22.23 0.22 -1.95 16 27 C -0.07 -1.36 9.47 22.58 0.21 -1.14 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.33 7.30 -2.38 -0.02 1.31 16 33 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 34 H 0.12 2.92 6.44 -2.39 -0.02 2.91 16 35 H 0.05 2.40 6.17 -2.39 -0.01 2.38 16 36 H 0.01 0.70 6.85 -2.39 -0.02 0.68 16 37 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.10 2.83 7.36 -2.39 -0.02 2.81 16 39 H 0.11 2.74 7.22 -2.39 -0.02 2.72 16 40 H 0.11 2.76 8.04 -2.39 -0.02 2.74 16 41 H 0.10 2.81 8.05 -2.39 -0.02 2.79 16 42 H 0.13 2.49 7.65 -2.91 -0.02 2.47 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 46 H 0.08 0.49 8.08 -2.38 -0.02 0.47 16 47 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 2.45 7.05 -2.91 -0.02 2.43 16 Total: -1.00 -82.80 399.70 5.23 -77.57 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.89 Total: 17.49 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.67 Total: 1.39 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -1.70 Total: -87.87 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -1.51 Total: -57.01 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.43 kcal Total: -82.80 5.23 -77.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.093 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds