Wall clock time and date at job start Tue Mar 31 2020 19:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46825 * 2 1 4 4 C 1.53003 * 109.47059 * 119.99831 * 2 1 3 5 5 C 1.52998 * 109.46934 * 172.23190 * 4 2 1 6 6 H 1.09010 * 109.67759 * 41.31388 * 5 4 2 7 7 C 1.53296 * 109.67811 * 161.86494 * 5 4 2 8 8 O 1.42967 * 109.22015 * 172.02785 * 7 5 4 9 9 C 1.42961 * 114.16598 * 297.42136 * 8 7 5 10 10 C 1.52875 * 109.29824 * 62.44970 * 9 8 7 11 11 N 1.47144 * 108.61002 * 307.93771 * 10 9 8 12 12 C 1.34787 * 120.98086 * 230.50403 * 11 10 9 13 13 O 1.21588 * 119.99993 * 173.62134 * 12 11 10 14 14 C 1.47526 * 119.99810 * 353.61666 * 12 11 10 15 15 C 1.39665 * 120.19970 * 322.60250 * 14 12 11 16 16 C 1.37834 * 119.92092 * 180.27295 * 15 14 12 17 17 C 1.38566 * 120.32286 * 0.02562 * 16 15 14 18 18 C 1.38031 * 120.40354 * 359.97438 * 17 16 15 19 19 C 1.38833 * 120.07078 * 0.02562 * 18 17 16 20 20 O 1.35521 * 120.15962 * 180.02562 * 19 18 17 21 21 C 1.34807 * 117.00107 * 5.77476 * 20 19 18 22 22 H 1.08001 * 120.00502 * 5.16367 * 21 20 19 23 23 C 1.38695 * 119.99886 * 185.17063 * 21 20 19 24 24 N 1.31524 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00234 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47332 * 59.99677 * 25 23 21 27 27 H 1.48493 * 109.47371 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47098 * 299.99956 * 25 23 21 29 29 H 1.08999 * 109.47003 * 300.00238 * 1 2 3 30 30 H 1.08999 * 109.46840 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47119 * 240.00306 * 2 1 3 33 33 H 1.09000 * 109.47259 * 300.00061 * 3 2 1 34 34 H 1.08999 * 109.47022 * 60.00247 * 3 2 1 35 35 H 1.09004 * 109.46802 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47046 * 52.23482 * 4 2 1 37 37 H 1.08999 * 109.47241 * 292.23534 * 4 2 1 38 38 H 1.08999 * 109.51602 * 291.94963 * 7 5 4 39 39 H 1.08999 * 109.51086 * 52.10918 * 7 5 4 40 40 H 1.08996 * 109.51017 * 182.50368 * 9 8 7 41 41 H 1.08997 * 109.51608 * 302.60687 * 9 8 7 42 42 H 1.09003 * 109.62075 * 188.10918 * 10 9 8 43 43 H 1.09008 * 109.52243 * 67.69859 * 10 9 8 44 44 H 1.08000 * 120.03928 * 0.26004 * 15 14 12 45 45 H 1.08001 * 119.83494 * 179.97438 * 16 15 14 46 46 H 1.08002 * 119.80064 * 179.97438 * 17 16 15 47 47 H 1.08002 * 119.96287 * 179.97438 * 18 17 16 48 48 H 0.96995 * 120.00026 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5575 -0.8923 1.1556 6 1 4.0057 0.0184 0.7580 7 6 4.1308 -1.1859 2.5467 8 8 5.5137 -1.5268 2.4235 9 6 5.7591 -2.7102 1.6598 10 6 5.2682 -2.4981 0.2277 11 7 3.8751 -2.0266 0.2738 12 6 2.9169 -2.6201 -0.4655 13 8 1.7537 -2.2939 -0.3281 14 6 3.2797 -3.6652 -1.4414 15 6 4.4581 -3.5554 -2.1830 16 6 4.7886 -4.5325 -3.0973 17 6 3.9567 -5.6246 -3.2856 18 6 2.7889 -5.7465 -2.5600 19 6 2.4399 -4.7721 -1.6346 20 8 1.2940 -4.8903 -0.9208 21 6 0.5967 -6.0346 -1.0678 22 1 0.9988 -6.8391 -1.6656 23 6 -0.6374 -6.1786 -0.4515 24 7 -1.1271 -5.1990 0.2768 25 14 -1.6042 -7.7639 -0.6557 26 1 -0.8064 -8.9013 -0.1313 27 1 -2.8802 -7.6660 0.0975 28 1 -1.8943 -7.9848 -2.0953 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.5677 -1.7010 1.3214 37 1 1.7945 -0.1335 2.1338 38 1 4.0283 -0.3024 3.1767 39 1 3.5892 -2.0188 2.9952 40 1 6.8280 -2.9231 1.6518 41 1 5.2241 -3.5487 2.1056 42 1 5.3194 -3.4392 -0.3200 43 1 5.8921 -1.7520 -0.2646 44 1 5.1094 -2.7059 -2.0404 45 1 5.6999 -4.4460 -3.6703 46 1 4.2237 -6.3850 -4.0046 47 1 2.1456 -6.6005 -2.7127 48 1 -1.9900 -5.2999 0.7082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113847661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:53 Heat of formation + Delta-G solvation = -49.212678 kcal Electronic energy + Delta-G solvation = -30890.167630 eV Core-core repulsion = 26912.431696 eV Total energy + Delta-G solvation = -3977.735934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.61825 -39.00362 -37.77885 -36.58873 -35.55076 -34.29988 -32.38693 -31.87159 -30.28328 -29.04162 -27.95439 -26.73655 -25.88369 -25.45342 -23.38788 -23.04591 -21.57818 -21.11860 -19.76312 -18.96334 -18.08969 -17.19750 -16.50597 -16.18351 -15.81728 -15.16560 -15.12512 -14.88028 -14.70184 -14.60075 -14.28373 -13.99064 -13.63382 -13.46723 -13.28588 -13.09696 -12.73708 -12.71805 -12.49741 -12.08475 -11.80114 -11.75524 -11.64208 -11.43861 -11.35540 -11.19959 -11.03568 -10.99739 -10.88053 -10.66514 -10.49571 -10.28556 -10.17264 -10.00793 -9.64804 -9.55927 -8.91432 -8.40899 -8.13089 -8.03515 -7.35934 -6.50158 -4.09971 1.72284 2.25573 3.08692 3.10141 3.12893 3.26775 3.56506 3.85818 3.89510 4.48918 4.80235 4.96843 5.01831 5.04640 5.10747 5.15603 5.27051 5.40787 5.45648 5.47948 5.49569 5.53577 5.63698 5.67911 5.69990 5.76696 5.85183 5.94851 5.98938 6.05377 6.10219 6.12061 6.26444 6.30274 6.39192 6.52110 6.60397 6.61095 6.75774 6.91877 6.96593 6.99543 7.02717 7.12500 7.20329 7.22889 7.25835 7.64478 7.85078 7.94765 8.90855 8.97987 9.60524 10.64272 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.004959 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.533651 B = 5645.275572 C = 6870.755839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.153 4.153 4 C -0.115 4.115 5 C 0.118 3.882 6 H 0.074 0.926 7 C 0.050 3.950 8 O -0.384 6.384 9 C 0.045 3.955 10 C 0.069 3.931 11 N -0.618 5.618 12 C 0.563 3.437 13 O -0.484 6.484 14 C -0.224 4.224 15 C -0.046 4.046 16 C -0.228 4.228 17 C -0.053 4.053 18 C -0.236 4.236 19 C 0.190 3.810 20 O -0.138 6.138 21 C -0.401 4.401 22 H 0.092 0.908 23 C 0.046 3.954 24 N -0.838 5.838 25 Si 0.939 3.061 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.131 0.869 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.129 5.942 0.463 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C -0.211 4.211 4 C -0.152 4.152 5 C 0.015 3.985 6 H 0.092 0.908 7 C -0.027 4.027 8 O -0.303 6.303 9 C -0.032 4.032 10 C -0.054 4.054 11 N -0.356 5.356 12 C 0.355 3.645 13 O -0.359 6.359 14 C -0.228 4.228 15 C -0.065 4.065 16 C -0.247 4.247 17 C -0.072 4.072 18 C -0.256 4.256 19 C 0.131 3.869 20 O -0.037 6.037 21 C -0.477 4.477 22 H 0.110 0.890 23 C -0.162 4.162 24 N -0.470 5.470 25 Si 0.763 3.237 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.224 6.436 0.952 12.118 hybrid contribution -0.485 -1.015 -0.394 1.192 sum 9.739 5.421 0.558 11.160 Atomic orbital electron populations 1.21682 0.95340 1.02780 0.99441 1.21150 0.96083 0.93008 0.99298 1.22045 1.00282 0.97895 1.00829 1.22138 0.92084 1.04008 0.97007 1.21982 0.97797 0.88798 0.89938 0.90832 1.23094 0.82138 1.01182 0.96320 1.87900 1.24843 1.44511 1.73032 1.22940 1.01481 0.87833 0.90961 1.22575 0.82977 1.01890 0.97955 1.47938 1.08266 1.34262 1.45148 1.18156 0.84842 0.81171 0.80372 1.90861 1.18268 1.60906 1.65839 1.18840 0.98632 0.98711 1.06643 1.20924 0.93676 0.97564 0.94315 1.20488 1.02120 0.97607 1.04502 1.20897 0.93298 0.96413 0.96550 1.21157 1.00154 1.02464 1.01791 1.19215 0.86960 0.91659 0.89042 1.84071 1.27466 1.37769 1.54398 1.21362 1.01373 0.91010 1.33979 0.89038 1.25332 0.95958 0.99135 0.95730 1.70072 1.18200 1.31105 1.27596 0.85815 0.78829 0.80079 0.78929 1.19426 1.20168 1.19377 0.94265 0.94145 0.91006 0.89924 0.93463 0.93424 0.93405 0.87024 0.93504 0.88214 0.92451 0.88016 0.92555 0.87482 0.91327 0.86471 0.87245 0.87218 0.85131 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.04 37.16 0.34 -2.04 16 2 C -0.08 -1.30 1.88 -90.61 -0.17 -1.47 16 3 C -0.15 -2.09 9.02 37.16 0.34 -1.75 16 4 C -0.12 -1.92 3.69 -26.73 -0.10 -2.02 16 5 C 0.12 1.77 3.05 -67.43 -0.21 1.56 16 6 H 0.07 1.04 6.14 -51.92 -0.32 0.72 16 7 C 0.05 0.68 6.21 37.31 0.23 0.91 16 8 O -0.38 -5.27 10.74 -35.23 -0.38 -5.65 16 9 C 0.05 0.56 6.97 37.09 0.26 0.82 16 10 C 0.07 0.92 4.94 -3.75 -0.02 0.90 16 11 N -0.62 -10.21 3.03 -166.22 -0.50 -10.71 16 12 C 0.56 11.59 6.43 -12.47 -0.08 11.51 16 13 O -0.48 -11.41 8.69 -11.65 -0.10 -11.52 16 14 C -0.22 -4.62 5.21 -104.81 -0.55 -5.17 16 15 C -0.05 -0.77 7.42 -39.20 -0.29 -1.06 16 16 C -0.23 -3.60 10.02 -39.61 -0.40 -4.00 16 17 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 18 C -0.24 -4.91 9.12 -39.44 -0.36 -5.27 16 19 C 0.19 4.50 6.62 -38.60 -0.26 4.24 16 20 O -0.14 -3.87 8.46 -16.12 -0.14 -4.00 16 21 C -0.40 -10.96 9.44 30.90 0.29 -10.67 16 22 H 0.09 2.28 5.29 -52.49 -0.28 2.01 16 23 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 24 N -0.84 -24.29 13.67 55.48 0.76 -23.53 16 25 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 28 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.53 7.53 -51.93 -0.39 1.14 16 32 H 0.08 1.63 5.66 -51.93 -0.29 1.33 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 36 H 0.11 2.35 5.75 -52.42 -0.30 2.05 16 37 H 0.05 0.69 8.01 -51.93 -0.42 0.27 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.11 1.45 4.90 -51.93 -0.25 1.20 16 43 H 0.07 0.79 7.98 -51.92 -0.41 0.37 16 44 H 0.12 1.63 6.26 -52.49 -0.33 1.30 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.13 2.70 5.71 -52.49 -0.30 2.40 16 48 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.05 369.23 -8.27 -39.32 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.99 Total: 9.13 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.46 Total: -13.66 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.26 Total: -34.24 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.62 Total: -21.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.05 -8.27 -39.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113847661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.896 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds