Wall clock time and date at job start Tue Mar 31 2020 19:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46825 * 2 1 4 4 C 1.53003 * 109.47059 * 119.99831 * 2 1 3 5 5 C 1.52998 * 109.46934 * 172.23190 * 4 2 1 6 6 H 1.09010 * 109.67759 * 41.31388 * 5 4 2 7 7 C 1.53296 * 109.67811 * 161.86494 * 5 4 2 8 8 O 1.42967 * 109.22015 * 172.02785 * 7 5 4 9 9 C 1.42961 * 114.16598 * 297.42136 * 8 7 5 10 10 C 1.52875 * 109.29824 * 62.44970 * 9 8 7 11 11 N 1.47144 * 108.61002 * 307.93771 * 10 9 8 12 12 C 1.34787 * 120.98086 * 230.50403 * 11 10 9 13 13 O 1.21588 * 119.99993 * 173.62134 * 12 11 10 14 14 C 1.47526 * 119.99810 * 353.61666 * 12 11 10 15 15 C 1.39665 * 120.19970 * 322.60250 * 14 12 11 16 16 C 1.37834 * 119.92092 * 180.27295 * 15 14 12 17 17 C 1.38566 * 120.32286 * 0.02562 * 16 15 14 18 18 C 1.38031 * 120.40354 * 359.97438 * 17 16 15 19 19 C 1.38833 * 120.07078 * 0.02562 * 18 17 16 20 20 O 1.35521 * 120.15962 * 180.02562 * 19 18 17 21 21 C 1.34807 * 117.00107 * 5.77476 * 20 19 18 22 22 H 1.08001 * 120.00502 * 5.16367 * 21 20 19 23 23 C 1.38695 * 119.99886 * 185.17063 * 21 20 19 24 24 N 1.31524 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00234 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47332 * 59.99677 * 25 23 21 27 27 H 1.48493 * 109.47371 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47098 * 299.99956 * 25 23 21 29 29 H 1.08999 * 109.47003 * 300.00238 * 1 2 3 30 30 H 1.08999 * 109.46840 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47119 * 240.00306 * 2 1 3 33 33 H 1.09000 * 109.47259 * 300.00061 * 3 2 1 34 34 H 1.08999 * 109.47022 * 60.00247 * 3 2 1 35 35 H 1.09004 * 109.46802 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47046 * 52.23482 * 4 2 1 37 37 H 1.08999 * 109.47241 * 292.23534 * 4 2 1 38 38 H 1.08999 * 109.51602 * 291.94963 * 7 5 4 39 39 H 1.08999 * 109.51086 * 52.10918 * 7 5 4 40 40 H 1.08996 * 109.51017 * 182.50368 * 9 8 7 41 41 H 1.08997 * 109.51608 * 302.60687 * 9 8 7 42 42 H 1.09003 * 109.62075 * 188.10918 * 10 9 8 43 43 H 1.09008 * 109.52243 * 67.69859 * 10 9 8 44 44 H 1.08000 * 120.03928 * 0.26004 * 15 14 12 45 45 H 1.08001 * 119.83494 * 179.97438 * 16 15 14 46 46 H 1.08002 * 119.80064 * 179.97438 * 17 16 15 47 47 H 1.08002 * 119.96287 * 179.97438 * 18 17 16 48 48 H 0.96995 * 120.00026 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5575 -0.8923 1.1556 6 1 4.0057 0.0184 0.7580 7 6 4.1308 -1.1859 2.5467 8 8 5.5137 -1.5268 2.4235 9 6 5.7591 -2.7102 1.6598 10 6 5.2682 -2.4981 0.2277 11 7 3.8751 -2.0266 0.2738 12 6 2.9169 -2.6201 -0.4655 13 8 1.7537 -2.2939 -0.3281 14 6 3.2797 -3.6652 -1.4414 15 6 4.4581 -3.5554 -2.1830 16 6 4.7886 -4.5325 -3.0973 17 6 3.9567 -5.6246 -3.2856 18 6 2.7889 -5.7465 -2.5600 19 6 2.4399 -4.7721 -1.6346 20 8 1.2940 -4.8903 -0.9208 21 6 0.5967 -6.0346 -1.0678 22 1 0.9988 -6.8391 -1.6656 23 6 -0.6374 -6.1786 -0.4515 24 7 -1.1271 -5.1990 0.2768 25 14 -1.6042 -7.7639 -0.6557 26 1 -0.8064 -8.9013 -0.1313 27 1 -2.8802 -7.6660 0.0975 28 1 -1.8943 -7.9848 -2.0953 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.5677 -1.7010 1.3214 37 1 1.7945 -0.1335 2.1338 38 1 4.0283 -0.3024 3.1767 39 1 3.5892 -2.0188 2.9952 40 1 6.8280 -2.9231 1.6518 41 1 5.2241 -3.5487 2.1056 42 1 5.3194 -3.4392 -0.3200 43 1 5.8921 -1.7520 -0.2646 44 1 5.1094 -2.7059 -2.0404 45 1 5.6999 -4.4460 -3.6703 46 1 4.2237 -6.3850 -4.0046 47 1 2.1456 -6.6005 -2.7127 48 1 -1.9900 -5.2999 0.7082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113847661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:51 Heat of formation + Delta-G solvation = -68.857350 kcal Electronic energy + Delta-G solvation = -30891.019487 eV Core-core repulsion = 26912.431696 eV Total energy + Delta-G solvation = -3978.587791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00907 -40.57040 -39.09981 -38.21405 -36.93809 -35.63586 -34.32643 -33.12321 -31.69362 -30.62118 -29.22612 -28.00276 -27.38381 -27.11111 -24.83363 -24.28500 -23.07694 -22.49569 -21.12099 -20.39326 -19.88061 -18.71794 -18.04495 -17.40786 -17.03521 -16.57956 -16.46269 -16.32901 -16.13405 -16.00755 -15.78211 -15.44715 -15.24186 -14.93656 -14.68589 -14.54702 -14.23408 -14.09356 -13.92499 -13.55567 -13.23748 -13.08978 -13.02859 -12.87949 -12.70701 -12.58582 -12.47642 -12.34834 -12.27907 -12.18349 -11.93088 -11.58271 -11.40951 -11.38406 -11.27409 -10.95274 -10.82259 -9.93355 -9.63359 -9.34408 -9.02398 -8.46154 -6.16031 0.20909 0.71444 1.30738 1.42514 1.47451 1.91352 2.10231 2.14181 2.81092 2.85025 3.18222 3.43652 3.64165 3.66786 3.93904 4.01234 4.06954 4.12507 4.18407 4.20793 4.27407 4.32475 4.35713 4.49274 4.54877 4.60957 4.61866 4.66872 4.76882 4.80536 4.83213 4.86387 4.90200 4.97157 5.05098 5.07696 5.13557 5.16950 5.25446 5.42343 5.47528 5.54626 5.60491 5.64476 5.70364 5.88413 5.95071 6.06200 6.16724 6.50567 6.94613 7.47764 7.78070 8.73988 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.004959 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.533651 B = 5645.275572 C = 6870.755839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.107 4.107 5 C 0.119 3.881 6 H 0.097 0.903 7 C 0.055 3.945 8 O -0.384 6.384 9 C 0.045 3.955 10 C 0.064 3.936 11 N -0.615 5.615 12 C 0.550 3.450 13 O -0.526 6.526 14 C -0.235 4.235 15 C -0.039 4.039 16 C -0.197 4.197 17 C -0.046 4.046 18 C -0.255 4.255 19 C 0.149 3.851 20 O -0.199 6.199 21 C -0.422 4.422 22 H 0.103 0.897 23 C -0.019 4.019 24 N -0.905 5.905 25 Si 1.016 2.984 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.256 1.256 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.130 0.870 39 H 0.035 0.965 40 H 0.141 0.859 41 H 0.036 0.964 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.151 0.849 47 H 0.120 0.880 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.620 6.918 -0.965 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.199 4.199 4 C -0.145 4.145 5 C 0.016 3.984 6 H 0.114 0.886 7 C -0.023 4.023 8 O -0.302 6.302 9 C -0.032 4.032 10 C -0.058 4.058 11 N -0.351 5.351 12 C 0.341 3.659 13 O -0.403 6.403 14 C -0.240 4.240 15 C -0.057 4.057 16 C -0.215 4.215 17 C -0.064 4.064 18 C -0.275 4.275 19 C 0.095 3.905 20 O -0.102 6.102 21 C -0.498 4.498 22 H 0.120 0.880 23 C -0.218 4.218 24 N -0.541 5.541 25 Si 0.835 3.165 26 H -0.179 1.179 27 H -0.199 1.199 28 H -0.181 1.181 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.158 0.842 41 H 0.054 0.946 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.173 0.827 45 H 0.180 0.820 46 H 0.169 0.831 47 H 0.138 0.862 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.823 7.412 -0.504 16.580 hybrid contribution -1.489 -1.206 -0.111 1.920 sum 13.333 6.206 -0.615 14.720 Atomic orbital electron populations 1.21608 0.96661 0.99656 1.00735 1.21028 0.94995 0.95221 0.97929 1.21927 1.01096 0.94915 1.01968 1.21904 0.93392 1.01345 0.97831 1.22102 0.96476 0.89056 0.90730 0.88562 1.23098 0.82017 1.01640 0.95518 1.87907 1.24338 1.44820 1.73174 1.23089 1.03440 0.86785 0.89905 1.22855 0.81203 1.02642 0.99057 1.47986 1.09030 1.34013 1.44093 1.18397 0.85020 0.81445 0.81043 1.90895 1.20215 1.62211 1.66985 1.19295 0.99602 0.97839 1.07234 1.21365 0.92246 0.99000 0.93115 1.21153 1.02628 0.95392 1.02346 1.21382 0.91425 0.97753 0.95810 1.21291 1.01980 1.01807 1.02382 1.19948 0.86578 0.93826 0.90116 1.84064 1.29918 1.38631 1.57634 1.21844 1.01913 0.91764 1.34265 0.87984 1.26620 0.96900 1.03042 0.95244 1.70267 1.18966 1.34165 1.30701 0.84695 0.77024 0.75372 0.79390 1.17900 1.19897 1.18057 0.92309 0.93335 0.96298 0.93194 0.92909 0.91718 0.91897 0.92488 0.91390 0.85262 0.94673 0.84180 0.94589 0.87793 0.87995 0.82746 0.82035 0.83131 0.86182 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.04 71.98 0.65 -4.25 16 2 C -0.07 -2.55 1.88 -10.79 -0.02 -2.58 16 3 C -0.14 -3.57 9.02 71.98 0.65 -2.92 16 4 C -0.11 -3.73 3.69 30.59 0.11 -3.61 16 5 C 0.12 3.46 3.05 44.97 0.14 3.59 16 6 H 0.10 2.42 6.14 -2.38 -0.01 2.40 16 7 C 0.05 1.41 6.21 72.08 0.45 1.85 16 8 O -0.38 -9.44 10.74 -148.98 -1.60 -11.04 16 9 C 0.04 0.99 6.97 71.94 0.50 1.49 16 10 C 0.06 1.52 4.94 86.21 0.43 1.94 16 11 N -0.61 -20.07 3.03 -798.06 -2.41 -22.49 16 12 C 0.55 23.78 6.43 86.69 0.56 24.34 16 13 O -0.53 -27.29 8.69 12.20 0.11 -27.18 16 14 C -0.24 -9.91 5.21 -19.99 -0.10 -10.01 16 15 C -0.04 -1.18 7.42 22.52 0.17 -1.01 16 16 C -0.20 -5.19 10.02 22.25 0.22 -4.96 16 17 C -0.05 -1.40 10.03 22.30 0.22 -1.18 16 18 C -0.26 -10.76 9.12 22.36 0.20 -10.56 16 19 C 0.15 7.49 6.62 22.91 0.15 7.64 16 20 O -0.20 -12.27 8.46 -3.80 -0.03 -12.30 16 21 C -0.42 -25.02 9.44 67.93 0.64 -24.38 16 22 H 0.10 5.48 5.29 -2.91 -0.02 5.46 16 23 C -0.02 -1.10 5.49 84.85 0.47 -0.63 16 24 N -0.90 -57.85 13.67 21.62 0.30 -57.56 16 25 Si 1.02 43.85 29.55 68.60 2.03 45.88 16 26 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.02 0.88 7.53 -2.39 -0.02 0.86 16 32 H 0.05 2.08 5.66 -2.39 -0.01 2.07 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.39 6.38 -2.39 -0.02 1.38 16 36 H 0.06 2.66 5.75 -10.21 -0.06 2.61 16 37 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 38 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 2.52 4.90 -2.39 -0.01 2.50 16 43 H 0.10 1.80 7.98 -2.38 -0.02 1.78 16 44 H 0.16 3.50 6.26 -2.91 -0.02 3.48 16 45 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 47 H 0.12 5.19 5.71 -2.91 -0.02 5.17 16 48 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -80.84 369.23 4.74 -76.10 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.93 Total: 33.82 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 5.44 Total: -25.23 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.12 Total: -80.04 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -1.53 Total: -50.52 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -80.84 4.74 -76.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113847661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.239 kcal (2) G-P(sol) polarization free energy of solvation -80.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds