Wall clock time and date at job start Tue Mar 31 2020 18:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 117.00204 * 2 1 4 4 O 1.20825 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00060 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47144 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99922 * 269.99488 * 6 5 3 8 8 H 1.08000 * 120.00209 * 140.65218 * 7 6 5 9 9 C 1.38953 * 120.00138 * 320.65022 * 7 6 5 10 10 N 1.31410 * 119.99899 * 158.99550 * 9 7 6 11 11 Si 1.86799 * 119.99903 * 339.00033 * 9 7 6 12 12 H 1.48501 * 109.47107 * 95.80592 * 11 9 7 13 13 H 1.48504 * 109.46955 * 215.80571 * 11 9 7 14 14 H 1.48497 * 109.47109 * 335.80930 * 11 9 7 15 15 C 1.34777 * 120.00168 * 89.99810 * 6 5 3 16 16 O 1.21291 * 120.00244 * 5.00260 * 15 6 5 17 17 C 1.50701 * 119.99923 * 185.00416 * 15 6 5 18 18 C 1.53002 * 109.47297 * 185.46060 * 17 15 6 19 19 C 1.50697 * 109.47285 * 179.10128 * 18 17 15 20 20 C 1.38231 * 119.99992 * 269.72149 * 19 18 17 21 21 C 1.38238 * 119.99947 * 179.76343 * 20 19 18 22 22 C 1.38229 * 119.99816 * 0.51883 * 21 20 19 23 23 C 1.50705 * 120.00093 * 179.72109 * 22 21 20 24 24 C 1.52991 * 109.47199 * 300.01865 * 23 22 21 25 25 C 1.53005 * 109.47058 * 60.02166 * 23 22 21 26 26 C 1.38240 * 120.00029 * 359.73676 * 22 21 20 27 27 C 1.38229 * 119.99914 * 90.00376 * 19 18 17 28 28 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46680 * 300.00899 * 1 2 3 30 30 H 1.09002 * 109.46263 * 60.00184 * 1 2 3 31 31 H 1.09000 * 109.47476 * 59.99018 * 5 3 2 32 32 H 1.09007 * 109.46743 * 299.99498 * 5 3 2 33 33 H 0.97001 * 119.99743 * 180.02562 * 10 9 7 34 34 H 1.08991 * 109.47641 * 65.45848 * 17 15 6 35 35 H 1.09003 * 109.46983 * 305.45888 * 17 15 6 36 36 H 1.09006 * 109.47161 * 59.10205 * 18 17 15 37 37 H 1.08997 * 109.46962 * 299.10429 * 18 17 15 38 38 H 1.08001 * 120.00263 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.00263 * 180.23514 * 21 20 19 40 40 H 1.09004 * 109.46768 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47312 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47225 * 300.00417 * 24 23 22 43 43 H 1.09006 * 109.47335 * 59.99655 * 24 23 22 44 44 H 1.08993 * 109.47102 * 59.99662 * 25 23 22 45 45 H 1.08997 * 109.47067 * 180.02562 * 25 23 22 46 46 H 1.09006 * 109.46519 * 299.99759 * 25 23 22 47 47 H 1.08003 * 119.99710 * 179.97438 * 26 22 21 48 48 H 1.08002 * 119.99972 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1758 3.3366 -1.1886 8 1 3.8613 4.3644 -1.2949 9 6 4.7772 2.6803 -2.2556 10 7 4.6036 3.1223 -3.4809 11 14 5.8322 1.1698 -1.9481 12 1 5.0126 -0.0537 -2.1395 13 1 6.9697 1.1579 -2.9027 14 1 6.3528 1.2042 -0.5578 15 6 4.1733 3.3262 1.1659 16 8 4.0905 2.7223 2.2145 17 6 4.4902 4.7995 1.1678 18 6 4.7928 5.2542 2.5970 19 6 5.1313 6.7227 2.5959 20 6 6.4433 7.1294 2.4413 21 6 6.7532 8.4766 2.4354 22 6 5.7524 9.4167 2.5948 23 6 6.0909 10.8852 2.5947 24 6 7.0646 11.1842 3.7363 25 6 6.7393 11.2590 1.2602 26 6 4.4409 9.0097 2.7548 27 6 4.1305 7.6627 2.7554 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.9558 0.7807 -0.8907 32 1 3.9564 0.7806 0.8893 33 1 5.0231 2.6639 -4.2258 34 1 3.6355 5.3556 0.7829 35 1 5.3588 4.9851 0.5359 36 1 5.6377 4.6869 2.9876 37 1 3.9187 5.0833 3.2254 38 1 7.2258 6.3949 2.3208 39 1 7.7778 8.7946 2.3107 40 1 5.1801 11.4680 2.7321 41 1 7.3099 12.2462 3.7359 42 1 6.6027 10.9178 4.6870 43 1 7.9755 10.6013 3.5991 44 1 6.0456 11.0459 0.4470 45 1 6.9846 12.3210 1.2603 46 1 7.6501 10.6760 1.1230 47 1 3.6591 9.7443 2.8798 48 1 3.1059 7.3448 2.8804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120543872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:40 Heat of formation + Delta-G solvation = -104.533744 kcal Electronic energy + Delta-G solvation = -28441.837392 eV Core-core repulsion = 24461.702557 eV Total energy + Delta-G solvation = -3980.134835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04111 -39.60062 -38.66858 -36.10978 -35.77003 -34.87014 -32.73389 -32.06040 -30.76819 -29.52568 -28.29516 -27.27677 -26.58080 -25.13605 -23.94260 -22.67698 -21.57860 -20.71632 -19.79422 -19.06062 -17.44305 -17.11224 -16.71941 -16.22777 -15.84782 -15.53227 -15.41797 -15.23764 -14.83208 -14.48258 -14.00043 -13.90893 -13.64194 -13.56196 -13.28263 -13.16196 -13.02954 -12.83732 -12.62475 -12.38439 -12.17953 -12.10486 -11.84412 -11.61991 -11.58437 -11.39472 -11.26158 -11.11394 -10.95040 -10.68717 -10.58557 -10.52758 -10.36070 -10.33371 -10.12365 -9.92180 -9.34996 -8.79010 -8.73893 -8.27295 -7.98704 -6.56707 -4.19972 1.50764 1.58417 2.83591 2.94908 3.00019 3.16305 3.20095 3.72123 3.89116 4.00951 4.28981 4.60919 4.71886 4.85318 5.07686 5.10047 5.16319 5.19077 5.34054 5.35711 5.43242 5.44368 5.47004 5.53552 5.61261 5.67980 5.68233 5.73519 5.75948 5.78424 5.82706 5.85283 5.86403 6.01643 6.08329 6.11939 6.21627 6.26896 6.37485 6.48909 6.61982 6.71487 6.74678 6.83716 6.93959 7.14639 7.19815 7.94954 8.15635 8.38101 8.82410 9.18274 9.50361 10.53748 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002803 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.701675 B = 9985.968715 C =10932.685179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.107 3.893 6 N -0.452 5.452 7 C -0.342 4.342 8 H 0.108 0.892 9 C 0.067 3.933 10 N -0.852 5.852 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.498 3.502 16 O -0.593 6.593 17 C -0.110 4.110 18 C -0.067 4.067 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.089 4.089 23 C -0.055 4.055 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.117 4.117 27 C -0.114 4.114 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.277 0.723 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.117 0.883 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 7.838 8.951 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.173 5.173 7 C -0.469 4.469 8 H 0.125 0.875 9 C -0.141 4.141 10 N -0.486 5.486 11 Si 0.687 3.313 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.289 3.711 16 O -0.478 6.478 17 C -0.150 4.150 18 C -0.104 4.104 19 C -0.073 4.073 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.074 4.074 24 C -0.200 4.200 25 C -0.202 4.202 26 C -0.135 4.135 27 C -0.132 4.132 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.671 7.850 9.234 12.235 hybrid contribution 0.145 -0.786 -0.417 0.902 sum 1.816 7.064 8.818 11.443 Atomic orbital electron populations 1.23137 0.77562 1.02836 1.02246 1.86526 1.22666 1.34551 1.84931 1.24780 0.92864 0.81193 0.72243 1.90609 1.66605 1.36253 1.43946 1.21334 0.86768 0.88783 1.04897 1.43404 1.58855 1.08311 1.06758 1.19081 1.40431 0.99832 0.87575 0.87492 1.25366 0.96068 0.97971 0.94706 1.69763 1.39630 1.40897 0.98325 0.87154 0.81455 0.82718 0.80001 1.19670 1.20651 1.17893 1.20535 0.77934 0.89857 0.82799 1.90545 1.56184 1.69181 1.31868 1.21329 1.04036 0.92937 0.96661 1.20404 1.02792 0.90141 0.97106 1.20015 0.93256 0.95921 0.98102 1.21074 0.96199 0.95715 1.00138 1.20891 0.98721 0.92716 1.00844 1.19768 0.93477 0.94860 1.00835 1.20092 0.99183 0.92292 0.95785 1.21852 0.99157 1.01081 0.97948 1.21860 1.00945 1.00865 0.96499 1.20984 0.95641 0.95755 1.01163 1.21062 0.99134 0.92660 1.00339 0.88718 0.92365 0.92177 0.87864 0.86918 0.91291 0.89478 0.88666 0.90707 0.90710 0.86042 0.86519 0.90765 0.92654 0.92635 0.92471 0.92377 0.92667 0.92421 0.86546 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.93 10.57 -39.26 -0.41 -7.35 16 3 C 0.45 9.95 8.02 36.00 0.29 10.24 16 4 O -0.49 -12.09 16.18 -18.75 -0.30 -12.39 16 5 C 0.11 2.40 4.84 -5.20 -0.03 2.38 16 6 N -0.45 -10.91 1.63 -116.10 -0.19 -11.10 16 7 C -0.34 -8.85 8.93 -14.93 -0.13 -8.98 16 8 H 0.11 2.93 7.45 -52.49 -0.39 2.54 16 9 C 0.07 1.73 5.32 -17.47 -0.09 1.64 16 10 N -0.85 -23.12 13.96 55.50 0.77 -22.34 16 11 Si 0.86 19.22 25.02 -169.99 -4.25 14.97 16 12 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.50 11.46 7.62 -10.98 -0.08 11.38 16 16 O -0.59 -14.41 15.55 5.55 0.09 -14.32 16 17 C -0.11 -2.13 4.33 -27.88 -0.12 -2.25 16 18 C -0.07 -1.11 4.64 -27.88 -0.13 -1.24 16 19 C -0.07 -1.09 5.13 -104.63 -0.54 -1.62 16 20 C -0.11 -1.56 9.70 -39.58 -0.38 -1.95 16 21 C -0.11 -1.41 8.71 -39.58 -0.34 -1.75 16 22 C -0.09 -1.06 4.78 -104.62 -0.50 -1.56 16 23 C -0.06 -0.52 3.09 -91.77 -0.28 -0.81 16 24 C -0.14 -1.19 9.01 37.15 0.33 -0.85 16 25 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 26 C -0.12 -1.47 9.67 -39.58 -0.38 -1.85 16 27 C -0.11 -1.59 9.70 -39.59 -0.38 -1.97 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.10 2.28 3.42 -51.93 -0.18 2.11 16 32 H 0.11 2.34 7.36 -51.92 -0.38 1.96 16 33 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 35 H 0.10 1.84 7.86 -51.93 -0.41 1.43 16 36 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.12 1.23 7.10 -52.49 -0.37 0.86 16 40 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 47 H 0.12 1.22 7.95 -52.48 -0.42 0.80 16 48 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -30.71 396.20 -7.25 -37.96 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.54 Total: 7.18 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.38 Total: 1.42 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.59 Total: -33.44 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.63 Total: -34.06 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.25 Total: 14.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.71 -7.25 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120543872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.574 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds