Wall clock time and date at job start Tue Mar 31 2020 18:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 117.00204 * 2 1 4 4 O 1.20825 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00060 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47144 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99922 * 269.99488 * 6 5 3 8 8 H 1.08000 * 120.00209 * 140.65218 * 7 6 5 9 9 C 1.38953 * 120.00138 * 320.65022 * 7 6 5 10 10 N 1.31410 * 119.99899 * 158.99550 * 9 7 6 11 11 Si 1.86799 * 119.99903 * 339.00033 * 9 7 6 12 12 H 1.48501 * 109.47107 * 95.80592 * 11 9 7 13 13 H 1.48504 * 109.46955 * 215.80571 * 11 9 7 14 14 H 1.48497 * 109.47109 * 335.80930 * 11 9 7 15 15 C 1.34777 * 120.00168 * 89.99810 * 6 5 3 16 16 O 1.21291 * 120.00244 * 5.00260 * 15 6 5 17 17 C 1.50701 * 119.99923 * 185.00416 * 15 6 5 18 18 C 1.53002 * 109.47297 * 185.46060 * 17 15 6 19 19 C 1.50697 * 109.47285 * 179.10128 * 18 17 15 20 20 C 1.38231 * 119.99992 * 269.72149 * 19 18 17 21 21 C 1.38238 * 119.99947 * 179.76343 * 20 19 18 22 22 C 1.38229 * 119.99816 * 0.51883 * 21 20 19 23 23 C 1.50705 * 120.00093 * 179.72109 * 22 21 20 24 24 C 1.52991 * 109.47199 * 300.01865 * 23 22 21 25 25 C 1.53005 * 109.47058 * 60.02166 * 23 22 21 26 26 C 1.38240 * 120.00029 * 359.73676 * 22 21 20 27 27 C 1.38229 * 119.99914 * 90.00376 * 19 18 17 28 28 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46680 * 300.00899 * 1 2 3 30 30 H 1.09002 * 109.46263 * 60.00184 * 1 2 3 31 31 H 1.09000 * 109.47476 * 59.99018 * 5 3 2 32 32 H 1.09007 * 109.46743 * 299.99498 * 5 3 2 33 33 H 0.97001 * 119.99743 * 180.02562 * 10 9 7 34 34 H 1.08991 * 109.47641 * 65.45848 * 17 15 6 35 35 H 1.09003 * 109.46983 * 305.45888 * 17 15 6 36 36 H 1.09006 * 109.47161 * 59.10205 * 18 17 15 37 37 H 1.08997 * 109.46962 * 299.10429 * 18 17 15 38 38 H 1.08001 * 120.00263 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.00263 * 180.23514 * 21 20 19 40 40 H 1.09004 * 109.46768 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47312 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47225 * 300.00417 * 24 23 22 43 43 H 1.09006 * 109.47335 * 59.99655 * 24 23 22 44 44 H 1.08993 * 109.47102 * 59.99662 * 25 23 22 45 45 H 1.08997 * 109.47067 * 180.02562 * 25 23 22 46 46 H 1.09006 * 109.46519 * 299.99759 * 25 23 22 47 47 H 1.08003 * 119.99710 * 179.97438 * 26 22 21 48 48 H 1.08002 * 119.99972 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1758 3.3366 -1.1886 8 1 3.8613 4.3644 -1.2949 9 6 4.7772 2.6803 -2.2556 10 7 4.6036 3.1223 -3.4809 11 14 5.8322 1.1698 -1.9481 12 1 5.0126 -0.0537 -2.1395 13 1 6.9697 1.1579 -2.9027 14 1 6.3528 1.2042 -0.5578 15 6 4.1733 3.3262 1.1659 16 8 4.0905 2.7223 2.2145 17 6 4.4902 4.7995 1.1678 18 6 4.7928 5.2542 2.5970 19 6 5.1313 6.7227 2.5959 20 6 6.4433 7.1294 2.4413 21 6 6.7532 8.4766 2.4354 22 6 5.7524 9.4167 2.5948 23 6 6.0909 10.8852 2.5947 24 6 7.0646 11.1842 3.7363 25 6 6.7393 11.2590 1.2602 26 6 4.4409 9.0097 2.7548 27 6 4.1305 7.6627 2.7554 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.9558 0.7807 -0.8907 32 1 3.9564 0.7806 0.8893 33 1 5.0231 2.6639 -4.2258 34 1 3.6355 5.3556 0.7829 35 1 5.3588 4.9851 0.5359 36 1 5.6377 4.6869 2.9876 37 1 3.9187 5.0833 3.2254 38 1 7.2258 6.3949 2.3208 39 1 7.7778 8.7946 2.3107 40 1 5.1801 11.4680 2.7321 41 1 7.3099 12.2462 3.7359 42 1 6.6027 10.9178 4.6870 43 1 7.9755 10.6013 3.5991 44 1 6.0456 11.0459 0.4470 45 1 6.9846 12.3210 1.2603 46 1 7.6501 10.6760 1.1230 47 1 3.6591 9.7443 2.8798 48 1 3.1059 7.3448 2.8804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120543872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:39 Heat of formation + Delta-G solvation = -119.260490 kcal Electronic energy + Delta-G solvation = -28442.475992 eV Core-core repulsion = 24461.702557 eV Total energy + Delta-G solvation = -3980.773435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75481 -40.76311 -40.27683 -37.67483 -36.93392 -36.63931 -34.08929 -33.95360 -31.78810 -31.03304 -29.60432 -27.96065 -27.93814 -26.98923 -25.29580 -23.71545 -22.80780 -22.19912 -20.96903 -20.70667 -19.19286 -18.88076 -18.39810 -17.48754 -17.33084 -17.10377 -16.92410 -16.66414 -16.06746 -15.87434 -15.61337 -14.96321 -14.77713 -14.67971 -14.59663 -14.47352 -14.38106 -14.18408 -14.07078 -13.69037 -13.58710 -13.42660 -13.06284 -13.00266 -12.86926 -12.67711 -12.52645 -12.35553 -12.25210 -11.96528 -11.91838 -11.84434 -11.82476 -11.72328 -11.49808 -11.43509 -11.19917 -10.64309 -9.92207 -9.76576 -9.34879 -8.55326 -6.23139 0.45921 0.55653 1.09236 1.17932 1.30309 1.40767 1.46339 1.94030 2.14162 2.49873 2.87177 2.94688 3.73884 3.83351 3.87591 3.91375 3.95707 4.10308 4.13596 4.19677 4.27779 4.29027 4.29865 4.36599 4.37106 4.46427 4.58854 4.62553 4.63463 4.68268 4.79685 4.84695 4.99244 5.01251 5.03201 5.10080 5.17670 5.23025 5.25414 5.27293 5.31984 5.38814 5.42949 5.59729 5.78946 5.81411 6.00947 6.11220 6.17802 6.68944 6.85847 7.23972 7.59987 8.58818 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002803 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.701675 B = 9985.968715 C =10932.685179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.099 3.901 6 N -0.462 5.462 7 C -0.345 4.345 8 H 0.077 0.923 9 C 0.029 3.971 10 N -0.891 5.891 11 Si 0.914 3.086 12 H -0.249 1.249 13 H -0.275 1.275 14 H -0.253 1.253 15 C 0.491 3.509 16 O -0.607 6.607 17 C -0.102 4.102 18 C -0.053 4.053 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.054 4.054 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.283 0.717 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.137 0.863 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 7.703 9.665 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.026 4.026 6 N -0.183 5.183 7 C -0.473 4.473 8 H 0.095 0.905 9 C -0.176 4.176 10 N -0.527 5.527 11 Si 0.737 3.263 12 H -0.175 1.175 13 H -0.200 1.200 14 H -0.176 1.176 15 C 0.283 3.717 16 O -0.492 6.492 17 C -0.141 4.141 18 C -0.090 4.090 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.087 4.087 23 C -0.073 4.073 24 C -0.198 4.198 25 C -0.201 4.201 26 C -0.141 4.141 27 C -0.144 4.144 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.155 0.845 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.345 7.689 9.954 12.795 hybrid contribution -0.175 -0.713 -0.625 0.964 sum 2.170 6.976 9.329 11.849 Atomic orbital electron populations 1.23570 0.74832 1.05935 1.02207 1.86491 1.25193 1.32339 1.84069 1.24664 0.92898 0.81645 0.71517 1.90595 1.67302 1.37561 1.45753 1.21452 0.87408 0.87907 1.05826 1.43465 1.59378 1.09087 1.06384 1.18857 1.40860 0.99123 0.88425 0.90485 1.25954 0.96612 1.00946 0.94102 1.69838 1.40783 1.42855 0.99247 0.86290 0.80020 0.79998 0.79955 1.17451 1.20036 1.17632 1.21114 0.77215 0.91050 0.82353 1.90518 1.56768 1.69828 1.32110 1.21294 1.03496 0.90730 0.98603 1.20227 1.02288 0.91669 0.94862 1.19897 0.94225 0.94809 1.00343 1.21233 0.95876 0.96767 1.00271 1.21138 0.99939 0.92147 1.00242 1.20140 0.93097 0.96365 0.99113 1.20158 1.00057 0.90506 0.96563 1.21835 0.98678 1.02179 0.97104 1.21858 1.00503 1.02025 0.95710 1.21260 0.96687 0.95482 1.00704 1.21200 0.99105 0.93412 1.00684 0.84024 0.92213 0.92533 0.87438 0.85298 0.90744 0.90199 0.88858 0.90865 0.91502 0.85499 0.84582 0.89887 0.91023 0.92981 0.92473 0.93527 0.90914 0.92522 0.84531 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -13.08 10.57 -51.44 -0.54 -13.62 16 3 C 0.45 19.83 8.02 71.23 0.57 20.40 16 4 O -0.52 -26.23 16.18 21.97 0.36 -25.87 16 5 C 0.10 4.36 4.84 85.63 0.41 4.77 16 6 N -0.46 -22.56 1.63 -639.61 -1.04 -23.60 16 7 C -0.35 -18.33 8.93 84.04 0.75 -17.58 16 8 H 0.08 4.45 7.45 -2.91 -0.02 4.43 16 9 C 0.03 1.51 5.32 84.93 0.45 1.96 16 10 N -0.89 -49.08 13.96 21.66 0.30 -48.78 16 11 Si 0.91 38.92 25.02 68.60 1.72 40.64 16 12 H -0.25 -9.74 6.71 99.48 0.67 -9.07 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 15 C 0.49 23.02 7.62 87.66 0.67 23.69 16 16 O -0.61 -29.66 15.55 -3.06 -0.05 -29.70 16 17 C -0.10 -4.09 4.33 29.85 0.13 -3.96 16 18 C -0.05 -1.80 4.64 29.85 0.14 -1.67 16 19 C -0.09 -2.80 5.13 -19.87 -0.10 -2.91 16 20 C -0.12 -3.38 9.70 22.27 0.22 -3.17 16 21 C -0.12 -2.76 8.71 22.27 0.19 -2.57 16 22 C -0.09 -1.95 4.78 -19.86 -0.09 -2.05 16 23 C -0.05 -0.91 3.09 -11.54 -0.04 -0.95 16 24 C -0.14 -1.99 9.01 71.98 0.65 -1.34 16 25 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 26 C -0.12 -2.97 9.67 22.27 0.22 -2.76 16 27 C -0.13 -3.53 9.70 22.27 0.22 -3.32 16 28 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.11 4.60 3.42 -2.39 -0.01 4.60 16 32 H 0.13 5.20 7.36 -2.38 -0.02 5.19 16 33 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.08 3.30 8.04 -2.39 -0.02 3.28 16 35 H 0.09 3.75 7.86 -2.39 -0.02 3.74 16 36 H 0.07 2.49 8.07 -2.38 -0.02 2.47 16 37 H 0.07 2.35 8.01 -2.39 -0.02 2.34 16 38 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 39 H 0.14 2.62 7.10 -2.91 -0.02 2.60 16 40 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.81 7.39 -2.38 -0.02 0.79 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.91 7.39 -2.38 -0.02 0.89 16 47 H 0.14 2.65 7.95 -2.91 -0.02 2.63 16 48 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -66.62 396.20 7.87 -58.74 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.91 Total: 33.35 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.22 Total: 8.85 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -0.74 Total: -72.38 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.24 Total: -69.20 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.72 Total: 40.64 kcal Total: -66.62 7.87 -58.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120543872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.516 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds