Wall clock time and date at job start Tue Mar 31 2020 18:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99648 * 2 1 4 4 O 1.20822 * 120.00245 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99985 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99920 * 263.99374 * 6 5 3 8 8 H 1.07995 * 120.00012 * 197.00662 * 7 6 5 9 9 C 1.38954 * 120.00005 * 17.00529 * 7 6 5 10 10 N 1.31410 * 119.99875 * 21.26815 * 9 7 6 11 11 Si 1.86797 * 119.99934 * 201.26662 * 9 7 6 12 12 H 1.48503 * 109.47044 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46933 * 120.00162 * 11 9 7 14 14 H 1.48494 * 109.47194 * 239.99917 * 11 9 7 15 15 C 1.34773 * 119.99985 * 83.99606 * 6 5 3 16 16 O 1.21295 * 119.99790 * 359.97438 * 15 6 5 17 17 C 1.50700 * 119.99819 * 179.97438 * 15 6 5 18 18 C 1.50701 * 109.46821 * 179.97438 * 17 15 6 19 19 C 1.38231 * 120.00035 * 90.00114 * 18 17 15 20 20 C 1.38236 * 120.00320 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99884 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00335 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47208 * 89.99717 * 22 21 20 24 24 C 1.53001 * 109.47118 * 184.99859 * 23 22 21 25 25 C 1.53003 * 109.46739 * 65.00472 * 23 22 21 26 26 C 1.38234 * 119.99808 * 0.25700 * 21 20 19 27 27 C 1.38238 * 119.99971 * 359.48877 * 26 21 20 28 28 H 1.09004 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47231 * 299.99343 * 1 2 3 30 30 H 1.09002 * 109.47256 * 60.00284 * 1 2 3 31 31 H 1.09002 * 109.46803 * 60.00063 * 5 3 2 32 32 H 1.09000 * 109.47451 * 300.00749 * 5 3 2 33 33 H 0.96998 * 119.99973 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47052 * 60.00546 * 17 15 6 35 35 H 1.08997 * 109.47316 * 299.99511 * 17 15 6 36 36 H 1.07999 * 119.99999 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.00274 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.46971 * 330.00078 * 22 21 20 39 39 H 1.08999 * 109.46941 * 210.00496 * 22 21 20 40 40 H 1.08997 * 109.47322 * 305.00934 * 23 22 21 41 41 H 1.08991 * 109.47337 * 300.00343 * 24 23 22 42 42 H 1.09002 * 109.46638 * 60.00403 * 24 23 22 43 43 H 1.08998 * 109.46909 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46918 * 299.99742 * 25 23 22 45 45 H 1.09000 * 109.47579 * 59.99625 * 25 23 22 46 46 H 1.08998 * 109.46956 * 180.02562 * 25 23 22 47 47 H 1.07999 * 120.00214 * 179.72547 * 26 21 20 48 48 H 1.08001 * 120.00203 * 180.25132 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2955 3.3024 -1.1795 8 1 4.8545 4.2263 -1.1708 9 6 3.8943 2.7444 -2.3872 10 7 2.8946 1.8920 -2.4173 11 14 4.7762 3.2059 -3.9679 12 1 5.8586 4.1767 -3.6656 13 1 5.3621 1.9873 -4.5817 14 1 3.8094 3.8202 -4.9129 15 6 4.0551 3.3604 1.1620 16 8 3.7769 2.8098 2.2064 17 6 4.4828 4.8055 1.1626 18 6 4.4815 5.3292 2.5757 19 6 5.6223 5.2314 3.3501 20 6 5.6212 5.7123 4.6461 21 6 4.4791 6.2904 5.1679 22 6 4.4777 6.8141 6.5810 23 6 4.9120 8.2812 6.5816 24 6 5.0309 8.7772 8.0241 25 6 3.8719 9.1212 5.8377 26 6 3.3365 6.3829 4.3954 27 6 3.3391 5.9068 3.0976 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 2.6144 1.5028 -3.2604 34 1 3.7891 5.3899 0.5583 35 1 5.4864 4.8875 0.7454 36 1 6.5145 4.7794 2.9426 37 1 6.5127 5.6363 5.2510 38 1 5.1711 6.2297 7.1858 39 1 3.4739 6.7320 6.9978 40 1 5.8774 8.3745 6.0844 41 1 4.0655 8.6839 8.5212 42 1 5.7719 8.1787 8.5541 43 1 5.3399 9.8225 8.0245 44 1 3.7871 8.7678 4.8100 45 1 2.9063 9.0279 6.3348 46 1 4.1814 10.1663 5.8377 47 1 2.4428 6.8305 4.8045 48 1 2.4477 5.9827 2.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120664827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:39 Heat of formation + Delta-G solvation = -106.325411 kcal Electronic energy + Delta-G solvation = -28859.791608 eV Core-core repulsion = 24879.579080 eV Total energy + Delta-G solvation = -3980.212528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.65012 -39.22394 -38.15411 -36.28417 -35.35451 -34.57381 -32.35876 -31.58663 -30.55491 -29.26360 -27.94728 -27.25058 -26.28600 -25.16657 -24.16905 -22.33681 -21.08197 -20.21112 -19.86505 -19.16222 -17.14085 -16.56959 -16.25877 -15.89100 -15.52870 -15.30733 -15.17907 -14.83328 -14.54022 -14.40828 -14.29333 -14.07039 -13.56853 -13.32239 -13.02132 -12.88723 -12.49950 -12.45949 -12.37021 -12.16895 -11.96085 -11.83903 -11.57871 -11.33801 -11.30883 -11.28345 -11.09945 -10.89213 -10.80466 -10.74159 -10.60953 -10.48608 -10.45559 -10.30044 -9.80709 -9.57934 -9.02325 -8.66358 -8.48263 -8.01771 -7.96536 -6.52693 -4.01271 1.74393 1.83171 3.05382 3.17303 3.20967 3.49808 3.70538 3.99038 4.07681 4.12252 4.72090 4.77932 4.80136 4.89248 4.98357 5.18530 5.28458 5.36301 5.42637 5.45949 5.54009 5.58949 5.70569 5.72280 5.78902 5.80217 5.84090 5.90310 5.95330 5.98145 5.99421 6.08447 6.14547 6.22158 6.25619 6.26409 6.28650 6.42632 6.51412 6.53427 6.65786 6.82102 6.94356 7.13927 7.31674 7.43028 7.47063 7.59344 8.21569 8.96253 9.12072 9.36044 9.77432 10.54958 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.002887 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.496925 B = 9695.760440 C =10846.917995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.158 3.842 6 N -0.432 5.432 7 C -0.336 4.336 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.868 5.868 11 Si 0.924 3.076 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.475 3.525 16 O -0.593 6.593 17 C -0.086 4.086 18 C -0.047 4.047 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.094 4.094 22 C -0.072 4.072 23 C -0.091 4.091 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.116 4.116 27 C -0.104 4.104 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.272 0.728 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.114 0.886 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 6.681 10.331 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.032 3.968 6 N -0.152 5.152 7 C -0.463 4.463 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.506 5.506 11 Si 0.750 3.250 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.265 3.735 16 O -0.478 6.478 17 C -0.126 4.126 18 C -0.047 4.047 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.204 4.204 25 C -0.208 4.208 26 C -0.134 4.134 27 C -0.122 4.122 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.132 0.868 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.583 6.606 10.683 12.823 hybrid contribution -0.120 0.150 -1.235 1.250 sum 2.463 6.755 9.448 11.873 Atomic orbital electron populations 1.22927 0.78763 1.01776 1.01613 1.86456 1.21652 1.35553 1.85723 1.23977 0.92307 0.80541 0.70575 1.90505 1.66496 1.36387 1.45022 1.20448 0.87192 0.85744 1.03437 1.43423 1.57527 1.08019 1.06187 1.19677 1.34405 1.10003 0.82257 0.87735 1.25222 0.94826 0.97109 0.99625 1.69859 1.22334 1.30601 1.27791 0.85918 0.79366 0.78551 0.81126 1.19138 1.20463 1.20852 1.20026 0.81998 0.87816 0.83698 1.90567 1.54993 1.70247 1.32040 1.20469 1.03525 0.95114 0.93442 1.19547 0.93514 0.96112 0.95557 1.20934 0.98071 0.99322 0.94070 1.20855 0.97537 0.99860 0.95505 1.19679 0.94025 0.99911 0.95772 1.20621 1.01953 0.95115 0.93278 1.21083 0.99570 0.94364 0.95940 1.21854 1.01623 1.00761 0.96190 1.21919 0.98557 0.99105 1.01187 1.20882 0.97466 1.00876 0.94186 1.20999 0.97554 0.98141 0.95506 0.89630 0.93190 0.92626 0.86052 0.90102 0.91765 0.88673 0.89160 0.86518 0.86801 0.91384 0.91369 0.91166 0.92775 0.92803 0.92840 0.91805 0.92917 0.93158 0.86771 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.55 101.05 1.07 1.85 16 2 O -0.38 -8.26 10.57 -39.26 -0.41 -8.68 16 3 C 0.48 12.18 6.13 36.01 0.22 12.40 16 4 O -0.50 -14.03 15.76 -18.75 -0.30 -14.32 16 5 C 0.16 3.80 5.14 -5.19 -0.03 3.77 16 6 N -0.43 -10.75 2.18 -116.09 -0.25 -11.00 16 7 C -0.34 -8.24 9.14 -14.93 -0.14 -8.37 16 8 H 0.11 2.38 6.56 -52.49 -0.34 2.04 16 9 C 0.04 0.90 4.88 -17.47 -0.09 0.82 16 10 N -0.87 -22.29 9.27 55.50 0.51 -21.78 16 11 Si 0.92 18.87 29.60 -169.99 -5.03 13.84 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.48 11.48 7.41 -10.99 -0.08 11.39 16 16 O -0.59 -15.73 15.71 5.54 0.09 -15.65 16 17 C -0.09 -1.70 4.28 -29.03 -0.12 -1.83 16 18 C -0.05 -0.86 4.37 -104.62 -0.46 -1.32 16 19 C -0.11 -1.76 9.70 -39.58 -0.38 -2.14 16 20 C -0.12 -1.74 9.70 -39.58 -0.38 -2.13 16 21 C -0.09 -1.31 4.70 -104.62 -0.49 -1.80 16 22 C -0.07 -0.79 4.84 -27.88 -0.13 -0.92 16 23 C -0.09 -0.87 2.91 -90.62 -0.26 -1.14 16 24 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 25 C -0.15 -1.46 8.78 37.16 0.33 -1.13 16 26 C -0.12 -1.75 7.98 -39.58 -0.32 -2.07 16 27 C -0.10 -1.82 9.70 -39.58 -0.38 -2.21 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.12 2.89 6.39 -51.93 -0.33 2.56 16 32 H 0.08 1.84 7.61 -51.93 -0.40 1.44 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.09 1.88 8.04 -51.93 -0.42 1.46 16 35 H 0.09 1.61 7.64 -51.93 -0.40 1.21 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.71 6.28 -51.93 -0.33 0.38 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.11 1.49 8.05 -52.49 -0.42 1.06 16 48 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -31.44 396.30 -8.42 -39.86 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.68 Total: 7.40 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.32 Total: 4.36 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.26 Total: -32.78 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.62 Total: -38.65 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.44 -8.42 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120664827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.467 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds