Wall clock time and date at job start Tue Mar 31 2020 18:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99648 * 2 1 4 4 O 1.20822 * 120.00245 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99985 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47125 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99920 * 263.99374 * 6 5 3 8 8 H 1.07995 * 120.00012 * 197.00662 * 7 6 5 9 9 C 1.38954 * 120.00005 * 17.00529 * 7 6 5 10 10 N 1.31410 * 119.99875 * 21.26815 * 9 7 6 11 11 Si 1.86797 * 119.99934 * 201.26662 * 9 7 6 12 12 H 1.48503 * 109.47044 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46933 * 120.00162 * 11 9 7 14 14 H 1.48494 * 109.47194 * 239.99917 * 11 9 7 15 15 C 1.34773 * 119.99985 * 83.99606 * 6 5 3 16 16 O 1.21295 * 119.99790 * 359.97438 * 15 6 5 17 17 C 1.50700 * 119.99819 * 179.97438 * 15 6 5 18 18 C 1.50701 * 109.46821 * 179.97438 * 17 15 6 19 19 C 1.38231 * 120.00035 * 90.00114 * 18 17 15 20 20 C 1.38236 * 120.00320 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99884 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00335 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47208 * 89.99717 * 22 21 20 24 24 C 1.53001 * 109.47118 * 184.99859 * 23 22 21 25 25 C 1.53003 * 109.46739 * 65.00472 * 23 22 21 26 26 C 1.38234 * 119.99808 * 0.25700 * 21 20 19 27 27 C 1.38238 * 119.99971 * 359.48877 * 26 21 20 28 28 H 1.09004 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47231 * 299.99343 * 1 2 3 30 30 H 1.09002 * 109.47256 * 60.00284 * 1 2 3 31 31 H 1.09002 * 109.46803 * 60.00063 * 5 3 2 32 32 H 1.09000 * 109.47451 * 300.00749 * 5 3 2 33 33 H 0.96998 * 119.99973 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47052 * 60.00546 * 17 15 6 35 35 H 1.08997 * 109.47316 * 299.99511 * 17 15 6 36 36 H 1.07999 * 119.99999 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.00274 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.46971 * 330.00078 * 22 21 20 39 39 H 1.08999 * 109.46941 * 210.00496 * 22 21 20 40 40 H 1.08997 * 109.47322 * 305.00934 * 23 22 21 41 41 H 1.08991 * 109.47337 * 300.00343 * 24 23 22 42 42 H 1.09002 * 109.46638 * 60.00403 * 24 23 22 43 43 H 1.08998 * 109.46909 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.46918 * 299.99742 * 25 23 22 45 45 H 1.09000 * 109.47579 * 59.99625 * 25 23 22 46 46 H 1.08998 * 109.46956 * 180.02562 * 25 23 22 47 47 H 1.07999 * 120.00214 * 179.72547 * 26 21 20 48 48 H 1.08001 * 120.00203 * 180.25132 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2955 3.3024 -1.1795 8 1 4.8545 4.2263 -1.1708 9 6 3.8943 2.7444 -2.3872 10 7 2.8946 1.8920 -2.4173 11 14 4.7762 3.2059 -3.9679 12 1 5.8586 4.1767 -3.6656 13 1 5.3621 1.9873 -4.5817 14 1 3.8094 3.8202 -4.9129 15 6 4.0551 3.3604 1.1620 16 8 3.7769 2.8098 2.2064 17 6 4.4828 4.8055 1.1626 18 6 4.4815 5.3292 2.5757 19 6 5.6223 5.2314 3.3501 20 6 5.6212 5.7123 4.6461 21 6 4.4791 6.2904 5.1679 22 6 4.4777 6.8141 6.5810 23 6 4.9120 8.2812 6.5816 24 6 5.0309 8.7772 8.0241 25 6 3.8719 9.1212 5.8377 26 6 3.3365 6.3829 4.3954 27 6 3.3391 5.9068 3.0976 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 2.6144 1.5028 -3.2604 34 1 3.7891 5.3899 0.5583 35 1 5.4864 4.8875 0.7454 36 1 6.5145 4.7794 2.9426 37 1 6.5127 5.6363 5.2510 38 1 5.1711 6.2297 7.1858 39 1 3.4739 6.7320 6.9978 40 1 5.8774 8.3745 6.0844 41 1 4.0655 8.6839 8.5212 42 1 5.7719 8.1787 8.5541 43 1 5.3399 9.8225 8.0245 44 1 3.7871 8.7678 4.8100 45 1 2.9063 9.0279 6.3348 46 1 4.1814 10.1663 5.8377 47 1 2.4428 6.8305 4.8045 48 1 2.4477 5.9827 2.4927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120664827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:38 Heat of formation + Delta-G solvation = -121.021744 kcal Electronic energy + Delta-G solvation = -28860.428889 eV Core-core repulsion = 24879.579080 eV Total energy + Delta-G solvation = -3980.849809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41079 -40.69410 -39.82421 -37.44967 -37.02096 -36.49474 -33.66598 -33.46684 -31.77747 -30.83859 -29.37557 -27.95959 -27.84409 -26.77834 -25.64325 -23.55631 -22.52336 -21.76147 -21.01848 -20.75180 -18.93312 -18.47630 -18.10399 -17.30881 -17.05852 -16.96179 -16.58963 -16.23613 -16.06693 -15.71028 -15.60302 -15.14495 -15.10925 -14.61910 -14.29990 -14.25232 -14.19359 -14.11362 -13.48106 -13.27159 -13.10538 -13.07294 -13.02593 -12.87909 -12.83219 -12.58017 -12.52223 -12.44768 -12.21242 -12.01954 -11.79824 -11.65112 -11.59921 -11.53063 -11.45626 -11.43439 -10.95806 -10.52972 -9.89234 -9.71715 -9.29380 -8.38847 -5.93984 0.49469 0.59129 1.40693 1.50222 1.62965 1.68503 1.78833 2.23770 2.33687 2.74767 3.05518 3.16424 3.83606 3.92069 4.01309 4.10107 4.14516 4.21768 4.22230 4.32385 4.33845 4.38802 4.41165 4.48633 4.56460 4.64152 4.66913 4.74613 4.75406 4.77564 4.82471 4.87192 4.91085 5.00936 5.10821 5.12160 5.20332 5.27261 5.36928 5.44926 5.48282 5.52382 5.59891 5.61357 5.71702 5.79040 5.82703 6.21300 6.32697 7.06821 7.19656 7.48098 7.89260 8.69029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.002887 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.496925 B = 9695.760440 C =10846.917995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.154 3.846 6 N -0.442 5.442 7 C -0.354 4.354 8 H 0.118 0.882 9 C -0.004 4.004 10 N -0.897 5.897 11 Si 0.995 3.005 12 H -0.253 1.253 13 H -0.275 1.275 14 H -0.290 1.290 15 C 0.464 3.536 16 O -0.624 6.624 17 C -0.075 4.075 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.070 4.070 23 C -0.088 4.088 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.271 0.729 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.132 0.868 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 7.407 11.379 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.028 3.972 6 N -0.161 5.161 7 C -0.480 4.480 8 H 0.136 0.864 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.819 3.181 12 H -0.176 1.176 13 H -0.201 1.201 14 H -0.216 1.216 15 C 0.255 3.745 16 O -0.511 6.511 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.138 4.138 21 C -0.087 4.087 22 C -0.107 4.107 23 C -0.106 4.106 24 C -0.201 4.201 25 C -0.208 4.208 26 C -0.136 4.136 27 C -0.144 4.144 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.150 0.850 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.690 7.318 11.734 14.313 hybrid contribution -0.556 -0.122 -1.488 1.593 sum 3.134 7.197 10.247 12.908 Atomic orbital electron populations 1.23293 0.76220 1.04896 1.01135 1.86424 1.24117 1.33822 1.85040 1.24123 0.92686 0.80753 0.69498 1.90474 1.67370 1.37743 1.47031 1.20509 0.87021 0.86042 1.03601 1.43677 1.57414 1.08318 1.06695 1.20103 1.34757 1.10754 0.82402 0.86434 1.26117 0.95019 0.96938 1.02548 1.69966 1.23482 1.31708 1.28422 0.84842 0.78164 0.78454 0.76647 1.17627 1.20065 1.21634 1.20770 0.81391 0.89288 0.83062 1.90519 1.56331 1.71289 1.32985 1.20377 1.04008 0.92084 0.94981 1.19539 0.94776 0.97887 0.95202 1.21127 0.97780 0.99639 0.94931 1.21207 0.98822 0.98856 0.94925 1.20070 0.93161 0.98374 0.97099 1.20690 1.02858 0.96050 0.91150 1.21051 0.99133 0.93321 0.97107 1.21819 1.02146 1.01254 0.94854 1.21923 0.99078 0.99667 1.00181 1.21102 0.98793 1.00400 0.93296 1.21074 0.97113 0.99482 0.96768 0.84687 0.93245 0.93589 0.86104 0.89397 0.91865 0.89326 0.87396 0.85681 0.83974 0.90101 0.90740 0.91552 0.92373 0.92106 0.92145 0.93583 0.92362 0.92289 0.85010 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.55 113.37 1.20 2.52 16 2 O -0.38 -16.63 10.57 -51.41 -0.54 -17.18 16 3 C 0.49 25.03 6.13 71.24 0.44 25.47 16 4 O -0.54 -31.21 15.76 21.98 0.35 -30.87 16 5 C 0.15 7.63 5.14 85.63 0.44 8.07 16 6 N -0.44 -22.51 2.18 -639.58 -1.39 -23.91 16 7 C -0.35 -17.47 9.14 84.04 0.77 -16.70 16 8 H 0.12 5.34 6.56 -2.91 -0.02 5.32 16 9 C 0.00 -0.22 4.88 84.93 0.41 0.20 16 10 N -0.90 -46.72 9.27 21.66 0.20 -46.52 16 11 Si 1.00 38.49 29.60 68.60 2.03 40.52 16 12 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 13 H -0.28 -10.41 7.11 99.48 0.71 -9.71 16 14 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 15 C 0.46 23.04 7.41 87.66 0.65 23.69 16 16 O -0.62 -34.09 15.71 -3.08 -0.05 -34.14 16 17 C -0.08 -3.05 4.28 29.10 0.12 -2.93 16 18 C -0.07 -2.76 4.37 -19.87 -0.09 -2.85 16 19 C -0.12 -3.82 9.70 22.27 0.22 -3.60 16 20 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 21 C -0.09 -2.29 4.70 -19.87 -0.09 -2.38 16 22 C -0.07 -1.35 4.84 29.85 0.14 -1.20 16 23 C -0.09 -1.46 2.91 -10.79 -0.03 -1.49 16 24 C -0.14 -1.85 9.19 71.98 0.66 -1.18 16 25 C -0.15 -2.65 8.78 71.98 0.63 -2.02 16 26 C -0.12 -3.51 7.98 22.27 0.18 -3.33 16 27 C -0.13 -4.55 9.70 22.27 0.22 -4.34 16 28 H 0.14 3.32 8.14 -2.38 -0.02 3.30 16 29 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 30 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.12 5.91 6.39 -2.39 -0.02 5.89 16 32 H 0.09 4.12 7.61 -2.39 -0.02 4.10 16 33 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.09 3.64 8.04 -2.39 -0.02 3.63 16 35 H 0.11 3.88 7.64 -2.39 -0.02 3.86 16 36 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 39 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.97 6.28 -2.38 -0.01 0.95 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.13 3.33 8.05 -2.91 -0.02 3.31 16 48 H 0.10 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -69.00 396.30 7.61 -61.38 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.94 Total: 35.87 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.08 Total: 14.84 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.19 Total: -70.42 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -0.25 Total: -82.18 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -69.00 7.61 -61.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120664827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.640 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds