Wall clock time and date at job start Tue Mar 31 2020 18:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47348 * 2 1 4 4 C 1.38238 * 120.00175 * 89.99847 * 3 2 1 5 5 C 1.38226 * 120.00113 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00227 * 359.95591 * 5 4 3 7 7 C 1.50698 * 120.00165 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47112 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.46699 * 119.99955 * 7 6 5 10 10 C 1.52994 * 109.47307 * 239.99893 * 7 6 5 11 11 C 1.50698 * 109.47149 * 175.00144 * 10 7 6 12 12 O 1.21291 * 120.00100 * 0.02562 * 11 10 7 13 13 N 1.34777 * 120.00211 * 179.72749 * 11 10 7 14 14 C 1.37101 * 119.99464 * 0.27662 * 13 11 10 15 15 H 1.07997 * 120.00279 * 12.32766 * 14 13 11 16 16 C 1.38952 * 119.99510 * 192.33423 * 14 13 11 17 17 N 1.31409 * 120.00414 * 20.80035 * 16 14 13 18 18 Si 1.86806 * 119.99764 * 200.80242 * 16 14 13 19 19 H 1.48496 * 109.47147 * 84.98278 * 18 16 14 20 20 H 1.48504 * 109.46905 * 204.98411 * 18 16 14 21 21 H 1.48497 * 109.46968 * 324.98295 * 18 16 14 22 22 C 1.46498 * 120.00537 * 180.27543 * 13 11 10 23 23 C 1.50698 * 109.46897 * 84.45455 * 22 13 11 24 24 O 1.20822 * 120.00441 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99627 * 179.97438 * 23 22 13 26 26 C 1.45197 * 116.99800 * 180.02562 * 25 23 22 27 27 C 1.38233 * 119.99410 * 0.27817 * 6 5 4 28 28 C 1.38232 * 119.99956 * 269.97623 * 3 2 1 29 29 H 1.09003 * 109.46595 * 59.99587 * 1 2 3 30 30 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46921 * 300.00509 * 1 2 3 32 32 H 1.08996 * 109.46718 * 239.99994 * 2 1 3 33 33 H 1.08996 * 109.46775 * 120.00020 * 2 1 3 34 34 H 1.08006 * 119.99422 * 359.97438 * 4 3 2 35 35 H 1.08005 * 120.00367 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.46679 * 180.02562 * 9 7 6 37 37 H 1.08996 * 109.47556 * 299.99994 * 9 7 6 38 38 H 1.09000 * 109.47186 * 60.00232 * 9 7 6 39 39 H 1.09004 * 109.46912 * 55.00078 * 10 7 6 40 40 H 1.08995 * 109.47301 * 295.00624 * 10 7 6 41 41 H 0.96992 * 120.00290 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.47483 * 204.46089 * 22 13 11 43 43 H 1.09000 * 109.46829 * 324.46270 * 22 13 11 44 44 H 1.09003 * 109.47317 * 60.00267 * 26 25 23 45 45 H 1.08996 * 109.47312 * 180.02562 * 26 25 23 46 46 H 1.09004 * 109.47345 * 300.00156 * 26 25 23 47 47 H 1.08003 * 119.99579 * 179.72895 * 27 6 5 48 48 H 1.08003 * 120.00116 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3758 1.1971 6 6 2.9540 4.0274 0.0000 7 6 3.4564 5.4482 0.0000 8 1 3.5776 5.7907 1.0276 9 6 4.8044 5.5123 -0.7209 10 6 2.4489 6.3454 -0.7217 11 6 2.8898 7.7825 -0.6154 12 8 3.9097 8.0616 -0.0213 13 7 2.1539 8.7571 -1.1856 14 6 1.0013 8.4415 -1.8576 15 1 0.5757 7.4532 -1.7652 16 6 0.3807 9.3932 -2.6575 17 7 1.0642 10.4230 -3.1040 18 14 -1.4252 9.2089 -3.0982 19 1 -2.2606 9.7829 -2.0129 20 1 -1.7007 9.9280 -4.3680 21 1 -1.7498 7.7694 -3.2640 22 6 2.5856 10.1536 -1.0875 23 6 3.5813 10.4494 -2.1793 24 8 3.8975 9.5829 -2.9597 25 8 4.1161 11.6761 -2.2855 26 6 5.0677 11.8894 -3.3613 27 6 2.7190 3.3773 -1.1971 28 6 2.2633 2.0722 -1.1971 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9028 3.8852 2.1324 36 1 5.1680 6.5399 -0.7205 37 1 5.5222 4.8732 -0.2068 38 1 4.6836 5.1697 -1.7485 39 1 1.4669 6.2316 -0.2625 40 1 2.3942 6.0588 -1.7719 41 1 0.6310 11.0875 -3.6620 42 1 1.7218 10.8094 -1.1959 43 1 3.0506 10.3227 -0.1163 44 1 4.5830 11.6973 -4.3185 45 1 5.4225 12.9196 -3.3335 46 1 5.9122 11.2111 -3.2391 47 1 2.8951 3.8878 -2.1324 48 1 2.0833 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120670678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:58 Heat of formation + Delta-G solvation = -104.882162 kcal Electronic energy + Delta-G solvation = -29118.333429 eV Core-core repulsion = 25138.183485 eV Total energy + Delta-G solvation = -3980.149944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.74986 -39.34622 -38.33632 -35.87812 -35.12514 -34.58723 -32.77795 -31.58710 -30.76208 -29.20383 -28.33009 -27.11694 -25.98674 -24.59596 -24.01449 -22.63871 -21.56442 -20.42864 -19.62500 -19.04753 -16.99038 -16.60885 -16.53827 -15.80370 -15.54953 -15.39370 -15.22157 -14.85590 -14.38634 -14.33992 -14.06411 -13.81204 -13.68880 -13.31963 -13.11080 -12.83356 -12.79392 -12.55337 -12.47065 -12.28164 -11.78189 -11.60173 -11.50055 -11.36298 -11.34648 -11.29241 -11.09766 -10.86531 -10.77232 -10.70979 -10.51408 -10.36693 -10.30372 -10.09686 -9.83242 -9.59216 -9.00303 -8.74420 -8.50884 -8.27559 -7.99568 -6.51827 -3.98539 1.51311 1.58106 3.07123 3.17684 3.19724 3.48630 3.68742 3.90412 4.01228 4.07759 4.62891 4.75459 4.83072 4.97648 5.12693 5.15499 5.21316 5.26619 5.45970 5.50929 5.63937 5.66960 5.69539 5.73126 5.77074 5.77669 5.89528 5.92601 5.94697 6.06530 6.12733 6.19632 6.24374 6.28844 6.34221 6.42838 6.43758 6.55913 6.62557 6.67071 6.73393 6.76009 6.95370 7.03494 7.20210 7.33827 7.45456 7.59021 8.22927 8.96531 9.09075 9.36983 9.77781 10.54760 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003271 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.706020 B = 8557.401385 C =10030.188128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.067 4.067 7 C -0.036 4.036 8 H 0.080 0.920 9 C -0.143 4.143 10 C -0.109 4.109 11 C 0.470 3.530 12 O -0.600 6.600 13 N -0.431 5.431 14 C -0.330 4.330 15 H 0.106 0.894 16 C 0.036 3.964 17 N -0.873 5.873 18 Si 0.925 3.075 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.152 3.848 23 C 0.486 3.514 24 O -0.505 6.505 25 O -0.375 6.375 26 C 0.043 3.957 27 C -0.109 4.109 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.273 0.727 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.123 0.877 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -10.558 4.245 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.137 4.137 5 C -0.134 4.134 6 C -0.067 4.067 7 C -0.054 4.054 8 H 0.099 0.901 9 C -0.200 4.200 10 C -0.149 4.149 11 C 0.261 3.739 12 O -0.486 6.486 13 N -0.150 5.150 14 C -0.458 4.458 15 H 0.123 0.877 16 C -0.169 4.169 17 N -0.512 5.512 18 Si 0.752 3.248 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.195 1.195 22 C 0.027 3.973 23 C 0.327 3.673 24 O -0.390 6.390 25 O -0.292 6.292 26 C -0.051 4.051 27 C -0.127 4.127 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.141 0.859 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.860 -10.505 4.129 11.320 hybrid contribution -0.914 0.056 -0.847 1.248 sum -0.054 -10.449 3.282 10.952 Atomic orbital electron populations 1.21754 0.94919 1.01355 1.02383 1.20496 0.96057 0.92984 1.02386 1.19804 1.00403 0.96136 0.93339 1.20928 1.00605 0.94970 0.97196 1.21071 0.99930 0.94689 0.97696 1.20067 0.97553 0.96149 0.92955 1.19910 0.95177 0.89202 1.01155 0.90117 1.21903 0.95487 1.03764 0.98837 1.21424 0.98988 0.92485 1.01961 1.20144 0.83734 0.87183 0.82888 1.90494 1.25928 1.83718 1.48478 1.43476 1.21381 1.03367 1.46745 1.19692 0.99005 1.00794 1.26260 0.87669 1.25189 1.00188 0.96196 0.95280 1.69864 1.35630 1.13548 1.32136 0.85963 0.82286 0.78732 0.77841 1.20095 1.21010 1.19462 1.20635 0.96968 0.86493 0.93245 1.24078 0.78442 0.78904 0.85846 1.90508 1.58926 1.47300 1.42229 1.86468 1.55811 1.35873 1.51052 1.22934 0.91397 1.00899 0.89917 1.21068 0.99068 0.94443 0.98134 1.20972 1.00328 0.94968 0.97258 0.92477 0.92704 0.92567 0.91358 0.91407 0.86610 0.86206 0.89804 0.93830 0.93547 0.90155 0.89653 0.91665 0.85129 0.90227 0.92667 0.89592 0.93163 0.85938 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 37.16 0.37 -0.90 16 2 C -0.08 -0.75 6.06 -27.88 -0.17 -0.92 16 3 C -0.10 -1.15 5.13 -104.62 -0.54 -1.69 16 4 C -0.12 -1.45 9.70 -39.59 -0.38 -1.83 16 5 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 6 C -0.07 -1.02 4.78 -104.62 -0.50 -1.52 16 7 C -0.04 -0.61 2.21 -91.77 -0.20 -0.82 16 8 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 9 C -0.14 -2.53 8.75 37.16 0.33 -2.20 16 10 C -0.11 -2.13 3.32 -27.89 -0.09 -2.22 16 11 C 0.47 11.11 7.16 -10.99 -0.08 11.03 16 12 O -0.60 -15.07 13.64 5.55 0.08 -14.99 16 13 N -0.43 -10.68 2.17 -116.10 -0.25 -10.93 16 14 C -0.33 -8.16 9.23 -14.93 -0.14 -8.29 16 15 H 0.11 2.45 6.48 -52.49 -0.34 2.11 16 16 C 0.04 0.87 4.96 -17.47 -0.09 0.78 16 17 N -0.87 -22.30 9.26 55.50 0.51 -21.79 16 18 Si 0.93 19.10 29.60 -169.99 -5.03 14.06 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 22 C 0.15 3.66 5.15 -5.20 -0.03 3.63 16 23 C 0.49 12.08 6.25 36.00 0.23 12.30 16 24 O -0.50 -13.98 16.00 -18.75 -0.30 -14.28 16 25 O -0.37 -8.15 10.57 -39.27 -0.41 -8.56 16 26 C 0.04 0.76 10.56 101.05 1.07 1.82 16 27 C -0.11 -1.58 8.76 -39.58 -0.35 -1.93 16 28 C -0.12 -1.50 9.70 -39.59 -0.38 -1.88 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.48 7.95 -52.48 -0.42 1.06 16 36 H 0.08 1.75 5.95 -51.93 -0.31 1.44 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.79 7.40 -51.93 -0.38 0.40 16 39 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 40 H 0.09 1.70 7.48 -51.93 -0.39 1.31 16 41 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.13 3.14 6.04 -51.93 -0.31 2.83 16 43 H 0.08 1.79 7.59 -51.93 -0.39 1.40 16 44 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 47 H 0.12 1.76 7.16 -52.48 -0.38 1.39 16 48 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -30.26 392.91 -8.34 -38.60 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.50 Total: 8.59 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.34 Total: 3.38 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.26 Total: -32.72 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.64 Total: -37.84 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.26 -8.34 -38.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120670678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.283 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds