Wall clock time and date at job start Tue Mar 31 2020 18:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47348 * 2 1 4 4 C 1.38238 * 120.00175 * 89.99847 * 3 2 1 5 5 C 1.38226 * 120.00113 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.00227 * 359.95591 * 5 4 3 7 7 C 1.50698 * 120.00165 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47112 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.46699 * 119.99955 * 7 6 5 10 10 C 1.52994 * 109.47307 * 239.99893 * 7 6 5 11 11 C 1.50698 * 109.47149 * 175.00144 * 10 7 6 12 12 O 1.21291 * 120.00100 * 0.02562 * 11 10 7 13 13 N 1.34777 * 120.00211 * 179.72749 * 11 10 7 14 14 C 1.37101 * 119.99464 * 0.27662 * 13 11 10 15 15 H 1.07997 * 120.00279 * 12.32766 * 14 13 11 16 16 C 1.38952 * 119.99510 * 192.33423 * 14 13 11 17 17 N 1.31409 * 120.00414 * 20.80035 * 16 14 13 18 18 Si 1.86806 * 119.99764 * 200.80242 * 16 14 13 19 19 H 1.48496 * 109.47147 * 84.98278 * 18 16 14 20 20 H 1.48504 * 109.46905 * 204.98411 * 18 16 14 21 21 H 1.48497 * 109.46968 * 324.98295 * 18 16 14 22 22 C 1.46498 * 120.00537 * 180.27543 * 13 11 10 23 23 C 1.50698 * 109.46897 * 84.45455 * 22 13 11 24 24 O 1.20822 * 120.00441 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99627 * 179.97438 * 23 22 13 26 26 C 1.45197 * 116.99800 * 180.02562 * 25 23 22 27 27 C 1.38233 * 119.99410 * 0.27817 * 6 5 4 28 28 C 1.38232 * 119.99956 * 269.97623 * 3 2 1 29 29 H 1.09003 * 109.46595 * 59.99587 * 1 2 3 30 30 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46921 * 300.00509 * 1 2 3 32 32 H 1.08996 * 109.46718 * 239.99994 * 2 1 3 33 33 H 1.08996 * 109.46775 * 120.00020 * 2 1 3 34 34 H 1.08006 * 119.99422 * 359.97438 * 4 3 2 35 35 H 1.08005 * 120.00367 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.46679 * 180.02562 * 9 7 6 37 37 H 1.08996 * 109.47556 * 299.99994 * 9 7 6 38 38 H 1.09000 * 109.47186 * 60.00232 * 9 7 6 39 39 H 1.09004 * 109.46912 * 55.00078 * 10 7 6 40 40 H 1.08995 * 109.47301 * 295.00624 * 10 7 6 41 41 H 0.96992 * 120.00290 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.47483 * 204.46089 * 22 13 11 43 43 H 1.09000 * 109.46829 * 324.46270 * 22 13 11 44 44 H 1.09003 * 109.47317 * 60.00267 * 26 25 23 45 45 H 1.08996 * 109.47312 * 180.02562 * 26 25 23 46 46 H 1.09004 * 109.47345 * 300.00156 * 26 25 23 47 47 H 1.08003 * 119.99579 * 179.72895 * 27 6 5 48 48 H 1.08003 * 120.00116 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7231 3.3758 1.1971 6 6 2.9540 4.0274 0.0000 7 6 3.4564 5.4482 0.0000 8 1 3.5776 5.7907 1.0276 9 6 4.8044 5.5123 -0.7209 10 6 2.4489 6.3454 -0.7217 11 6 2.8898 7.7825 -0.6154 12 8 3.9097 8.0616 -0.0213 13 7 2.1539 8.7571 -1.1856 14 6 1.0013 8.4415 -1.8576 15 1 0.5757 7.4532 -1.7652 16 6 0.3807 9.3932 -2.6575 17 7 1.0642 10.4230 -3.1040 18 14 -1.4252 9.2089 -3.0982 19 1 -2.2606 9.7829 -2.0129 20 1 -1.7007 9.9280 -4.3680 21 1 -1.7498 7.7694 -3.2640 22 6 2.5856 10.1536 -1.0875 23 6 3.5813 10.4494 -2.1793 24 8 3.8975 9.5829 -2.9597 25 8 4.1161 11.6761 -2.2855 26 6 5.0677 11.8894 -3.3613 27 6 2.7190 3.3773 -1.1971 28 6 2.2633 2.0722 -1.1971 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9028 3.8852 2.1324 36 1 5.1680 6.5399 -0.7205 37 1 5.5222 4.8732 -0.2068 38 1 4.6836 5.1697 -1.7485 39 1 1.4669 6.2316 -0.2625 40 1 2.3942 6.0588 -1.7719 41 1 0.6310 11.0875 -3.6620 42 1 1.7218 10.8094 -1.1959 43 1 3.0506 10.3227 -0.1163 44 1 4.5830 11.6973 -4.3185 45 1 5.4225 12.9196 -3.3335 46 1 5.9122 11.2111 -3.2391 47 1 2.8951 3.8878 -2.1324 48 1 2.0833 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120670678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:57 Heat of formation + Delta-G solvation = -118.389749 kcal Electronic energy + Delta-G solvation = -29118.919162 eV Core-core repulsion = 25138.183485 eV Total energy + Delta-G solvation = -3980.735677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.43059 -40.74090 -39.99442 -37.50748 -36.73049 -36.30885 -33.83992 -33.49084 -31.76641 -30.86287 -29.47967 -28.65088 -27.67899 -26.36329 -25.05582 -23.64657 -22.78919 -21.98998 -21.14490 -20.66015 -18.77412 -18.46381 -18.24695 -17.29771 -17.13363 -16.84081 -16.59594 -16.21301 -15.94248 -15.80084 -15.73077 -14.95124 -14.65276 -14.54412 -14.43709 -14.26437 -14.10733 -14.00293 -13.83994 -13.73291 -13.33486 -13.15579 -13.05979 -12.85398 -12.65689 -12.52097 -12.44998 -12.26843 -12.21599 -12.10578 -11.86160 -11.75467 -11.60261 -11.56280 -11.50207 -11.43053 -10.92209 -10.34690 -9.90916 -9.75504 -9.33835 -8.38408 -5.91457 0.48050 0.56813 1.41464 1.49022 1.59035 1.67414 1.79215 2.23861 2.33295 2.81968 2.95969 3.12723 3.81215 3.86044 4.01532 4.11394 4.21311 4.23618 4.24845 4.33484 4.38557 4.39008 4.40461 4.52367 4.57012 4.63174 4.64923 4.68900 4.72120 4.76946 4.80491 4.84251 4.93795 5.05184 5.11318 5.12437 5.22371 5.22861 5.32948 5.39548 5.43684 5.45540 5.60597 5.63415 5.72969 5.78498 5.85656 6.19245 6.33323 7.06970 7.18204 7.49610 7.90440 8.68188 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003271 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.706020 B = 8557.401385 C =10030.188128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.084 4.084 7 C -0.025 4.025 8 H 0.073 0.927 9 C -0.136 4.136 10 C -0.098 4.098 11 C 0.459 3.541 12 O -0.621 6.621 13 N -0.443 5.443 14 C -0.349 4.349 15 H 0.115 0.885 16 C -0.004 4.004 17 N -0.899 5.899 18 Si 0.994 3.006 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.263 1.263 22 C 0.149 3.851 23 C 0.487 3.513 24 O -0.542 6.542 25 O -0.376 6.376 26 C 0.037 3.963 27 C -0.122 4.122 28 C -0.123 4.123 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.272 0.728 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.135 0.865 46 H 0.050 0.950 47 H 0.114 0.886 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -12.372 4.694 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.093 4.093 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.044 4.044 8 H 0.091 0.909 9 C -0.193 4.193 10 C -0.138 4.138 11 C 0.250 3.750 12 O -0.509 6.509 13 N -0.162 5.162 14 C -0.476 4.476 15 H 0.132 0.868 16 C -0.206 4.206 17 N -0.539 5.539 18 Si 0.817 3.183 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.187 1.187 22 C 0.023 3.977 23 C 0.331 3.669 24 O -0.430 6.430 25 O -0.293 6.293 26 C -0.056 4.056 27 C -0.140 4.140 28 C -0.141 4.141 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.153 0.847 46 H 0.069 0.931 47 H 0.132 0.868 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.304 -12.305 4.592 13.138 hybrid contribution -0.465 0.646 -1.003 1.280 sum -0.769 -11.659 3.590 12.224 Atomic orbital electron populations 1.21744 0.94442 1.02347 1.01769 1.20561 0.96325 0.91221 1.03662 1.20185 0.98928 0.97416 0.92820 1.21235 0.99623 0.94364 0.98507 1.21238 0.99881 0.95504 0.97417 1.19849 0.99581 0.94942 0.94057 1.19749 0.94207 0.90455 1.00004 0.90880 1.21794 0.96363 1.01736 0.99400 1.21373 1.00096 0.90295 1.01987 1.20865 0.83373 0.88548 0.82211 1.90468 1.26750 1.84361 1.49295 1.43720 1.21798 1.03752 1.46908 1.20045 0.99237 1.01573 1.26719 0.86793 1.26043 1.03848 0.95744 0.94918 1.69969 1.36997 1.14237 1.32652 0.84926 0.77200 0.78850 0.77281 1.19196 1.21510 1.18700 1.20678 0.96837 0.86642 0.93502 1.24196 0.78107 0.79277 0.85351 1.90477 1.60356 1.48543 1.43639 1.86434 1.56363 1.34071 1.52385 1.23305 0.90261 1.03894 0.88169 1.21100 0.99952 0.95409 0.97588 1.21205 0.99912 0.94340 0.98622 0.93350 0.90963 0.92940 0.90373 0.89924 0.84087 0.85342 0.93355 0.92025 0.93428 0.89224 0.90279 0.91756 0.85383 0.89480 0.93623 0.84704 0.93101 0.86768 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.99 5.13 -19.87 -0.10 -2.09 16 4 C -0.12 -2.61 9.70 22.27 0.22 -2.39 16 5 C -0.12 -3.17 9.67 22.27 0.22 -2.95 16 6 C -0.08 -2.52 4.78 -19.87 -0.09 -2.61 16 7 C -0.03 -0.89 2.21 -11.54 -0.03 -0.91 16 8 H 0.07 2.65 7.69 -2.39 -0.02 2.63 16 9 C -0.14 -4.95 8.75 71.98 0.63 -4.32 16 10 C -0.10 -3.92 3.32 29.85 0.10 -3.82 16 11 C 0.46 22.35 7.16 87.66 0.63 22.97 16 12 O -0.62 -32.35 13.64 -3.06 -0.04 -32.39 16 13 N -0.44 -22.53 2.17 -639.62 -1.39 -23.92 16 14 C -0.35 -17.44 9.23 84.04 0.78 -16.66 16 15 H 0.11 5.33 6.48 -2.91 -0.02 5.31 16 16 C 0.00 -0.21 4.96 84.93 0.42 0.21 16 17 N -0.90 -46.53 9.26 21.66 0.20 -46.33 16 18 Si 0.99 38.90 29.60 68.60 2.03 40.93 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 C 0.15 7.37 5.15 85.63 0.44 7.81 16 23 C 0.49 24.84 6.25 71.24 0.45 25.29 16 24 O -0.54 -30.99 16.00 21.98 0.35 -30.64 16 25 O -0.38 -16.43 10.57 -51.46 -0.54 -16.97 16 26 C 0.04 1.28 10.56 113.37 1.20 2.48 16 27 C -0.12 -3.48 8.76 22.27 0.20 -3.29 16 28 C -0.12 -2.93 9.70 22.27 0.22 -2.72 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 1.05 8.08 -2.39 -0.02 1.04 16 33 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.13 3.01 7.95 -2.91 -0.02 2.99 16 36 H 0.05 2.10 5.95 -2.39 -0.01 2.09 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.67 7.40 -2.39 -0.02 1.65 16 39 H 0.09 3.38 7.74 -2.38 -0.02 3.36 16 40 H 0.08 3.25 7.48 -2.39 -0.02 3.23 16 41 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.13 6.33 6.04 -2.39 -0.01 6.32 16 43 H 0.09 4.06 7.59 -2.39 -0.02 4.04 16 44 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 45 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.05 1.73 8.13 -2.38 -0.02 1.71 16 47 H 0.11 3.34 7.16 -2.91 -0.02 3.32 16 48 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -66.28 392.91 7.70 -58.58 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.95 Total: 36.18 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.15 Total: 14.57 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.19 Total: -70.25 kcal Atomic # 8 Polarization: -79.76 SS G_CDS: -0.23 Total: -80.00 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -66.28 7.70 -58.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120670678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.813 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds