Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50707 * 109.47044 * 2 1 4 4 C 1.38234 * 119.99542 * 269.72622 * 3 2 1 5 5 C 1.38245 * 119.99642 * 179.78764 * 4 3 2 6 6 C 1.38233 * 119.99687 * 0.43914 * 5 4 3 7 7 C 1.50695 * 119.99935 * 179.83255 * 6 5 4 8 8 H 1.08994 * 109.47589 * 177.35474 * 7 6 5 9 9 C 1.53000 * 109.47129 * 57.35444 * 7 6 5 10 10 C 1.53001 * 109.47293 * 297.35604 * 7 6 5 11 11 C 1.50701 * 109.47406 * 186.31933 * 10 7 6 12 12 O 1.21296 * 119.99722 * 7.66082 * 11 10 7 13 13 N 1.34779 * 120.00415 * 187.66100 * 11 10 7 14 14 C 1.37093 * 119.99498 * 355.19085 * 13 11 10 15 15 H 1.08002 * 120.00596 * 324.48698 * 14 13 11 16 16 C 1.38952 * 119.99808 * 144.48998 * 14 13 11 17 17 N 1.31417 * 120.00252 * 157.40006 * 16 14 13 18 18 Si 1.86798 * 120.00012 * 337.40177 * 16 14 13 19 19 H 1.48499 * 109.47076 * 95.11188 * 18 16 14 20 20 H 1.48500 * 109.46833 * 215.11200 * 18 16 14 21 21 H 1.48504 * 109.47151 * 335.11101 * 18 16 14 22 22 C 1.46498 * 120.00126 * 175.19156 * 13 11 10 23 23 C 1.50699 * 109.47028 * 89.99896 * 22 13 11 24 24 O 1.20824 * 120.00342 * 359.97438 * 23 22 13 25 25 O 1.34236 * 119.99633 * 179.97438 * 23 22 13 26 26 C 1.45199 * 116.99597 * 180.02562 * 25 23 22 27 27 C 1.38237 * 120.00506 * 359.81646 * 6 5 4 28 28 C 1.38232 * 120.00027 * 90.00062 * 3 2 1 29 29 H 1.09004 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47040 * 299.99826 * 1 2 3 31 31 H 1.08999 * 109.47428 * 60.00562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 119.99438 * 2 1 3 33 33 H 1.08998 * 109.47262 * 239.99754 * 2 1 3 34 34 H 1.07994 * 120.00672 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00048 * 180.27434 * 5 4 3 36 36 H 1.08998 * 109.47359 * 180.02562 * 9 7 6 37 37 H 1.09007 * 109.46803 * 300.00075 * 9 7 6 38 38 H 1.08999 * 109.47203 * 59.99655 * 9 7 6 39 39 H 1.09001 * 109.47115 * 306.32008 * 10 7 6 40 40 H 1.08996 * 109.47168 * 66.31916 * 10 7 6 41 41 H 0.96995 * 119.99974 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46794 * 209.99930 * 22 13 11 43 43 H 1.09000 * 109.47027 * 329.99711 * 22 13 11 44 44 H 1.08991 * 109.47241 * 59.99880 * 26 25 23 45 45 H 1.09001 * 109.46747 * 180.02562 * 26 25 23 46 46 H 1.09007 * 109.46992 * 299.99531 * 26 25 23 47 47 H 1.07992 * 120.00315 * 179.97438 * 27 6 5 48 48 H 1.07998 * 120.00102 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2680 2.0705 -1.1972 5 6 2.7246 3.3754 -1.1972 6 6 2.9540 4.0273 -0.0001 7 6 3.4554 5.4485 -0.0001 8 1 3.5311 5.8071 1.0264 9 6 2.4799 6.3334 -0.7787 10 6 4.8335 5.5031 -0.6624 11 6 5.4023 6.8919 -0.5248 12 8 4.8352 7.7140 0.1635 13 7 6.5411 7.2204 -1.1665 14 6 7.2348 6.2655 -1.8639 15 1 7.2735 5.2504 -1.4971 16 6 7.8881 6.6036 -3.0427 17 7 8.8867 5.8668 -3.4751 18 14 7.3471 8.1055 -4.0127 19 1 8.1872 9.2694 -3.6323 20 1 7.5003 7.8381 -5.4653 21 1 5.9236 8.4029 -3.7115 22 6 7.0376 8.5979 -1.1187 23 6 7.9553 8.7602 0.0656 24 8 8.1720 7.8218 0.7952 25 8 8.5320 9.9475 0.3099 26 6 9.4045 10.0307 1.4676 27 6 2.7233 3.3759 1.1971 28 6 2.2626 2.0725 1.1971 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 2.0926 1.5598 -2.1324 35 1 2.9046 3.8845 -2.1325 36 1 2.8427 7.3612 -0.7791 37 1 2.4042 5.9747 -1.8053 38 1 1.4981 6.2944 -0.3070 39 1 5.4984 4.7885 -0.1772 40 1 4.7391 5.2522 -1.7189 41 1 9.3425 6.1027 -4.2982 42 1 7.5846 8.8189 -2.0352 43 1 6.1962 9.2842 -1.0232 44 1 10.2262 9.3236 1.3548 45 1 9.8033 11.0418 1.5500 46 1 8.8383 9.7894 2.3673 47 1 2.9030 3.8851 2.1324 48 1 2.0823 1.5636 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120670824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = -100.255110 kcal Electronic energy + Delta-G solvation = -28924.929509 eV Core-core repulsion = 24944.980209 eV Total energy + Delta-G solvation = -3979.949300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.06272 -39.60024 -38.64890 -36.12536 -35.47489 -34.77626 -32.84762 -32.06774 -30.75380 -29.50085 -28.45430 -27.37336 -26.15458 -24.83675 -24.07361 -22.63378 -21.63589 -20.85351 -19.79198 -18.91187 -17.45854 -17.10217 -16.76865 -16.06121 -15.77158 -15.49945 -15.42698 -15.24866 -14.79254 -14.46833 -14.07122 -13.73189 -13.62123 -13.43791 -13.26372 -13.13448 -13.03466 -12.78582 -12.67586 -12.42975 -12.20814 -11.92489 -11.82313 -11.61658 -11.54184 -11.34165 -11.23922 -10.98184 -10.85731 -10.69755 -10.49174 -10.41420 -10.33393 -10.18434 -10.10101 -9.90008 -9.31251 -8.74224 -8.71283 -8.28526 -8.03305 -6.59062 -4.17309 1.51671 1.59210 2.86088 2.92936 3.02847 3.14458 3.17418 3.70785 3.90803 3.98157 4.28106 4.74351 4.83021 4.84451 5.10465 5.13209 5.16838 5.26674 5.37300 5.44725 5.45379 5.45935 5.47104 5.62688 5.64299 5.66192 5.69618 5.75676 5.79568 5.80968 5.86637 5.92665 6.04336 6.11302 6.18448 6.26882 6.30181 6.36737 6.50118 6.60190 6.63369 6.74369 6.79025 6.86096 6.98771 7.11070 7.20543 7.93831 8.14662 8.41266 8.82238 9.18692 9.51384 10.51602 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.003070 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.804778 B = 9117.372300 C = 9995.856386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.096 4.096 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.068 4.068 7 C -0.040 4.040 8 H 0.083 0.917 9 C -0.141 4.141 10 C -0.107 4.107 11 C 0.494 3.506 12 O -0.591 6.591 13 N -0.449 5.449 14 C -0.340 4.340 15 H 0.108 0.892 16 C 0.065 3.935 17 N -0.849 5.849 18 Si 0.861 3.139 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.255 1.255 22 C 0.108 3.892 23 C 0.449 3.551 24 O -0.487 6.487 25 O -0.371 6.371 26 C 0.037 3.963 27 C -0.115 4.115 28 C -0.119 4.119 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.277 0.723 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.120 0.880 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -3.389 4.078 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.058 4.058 8 H 0.101 0.899 9 C -0.199 4.199 10 C -0.146 4.146 11 C 0.285 3.715 12 O -0.476 6.476 13 N -0.170 5.170 14 C -0.467 4.467 15 H 0.126 0.874 16 C -0.143 4.143 17 N -0.483 5.483 18 Si 0.687 3.313 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.179 1.179 22 C -0.018 4.018 23 C 0.289 3.711 24 O -0.372 6.372 25 O -0.288 6.288 26 C -0.058 4.058 27 C -0.133 4.133 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.076 0.924 47 H 0.138 0.862 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.263 -3.336 4.511 11.697 hybrid contribution 0.408 0.610 -0.488 0.881 sum -9.855 -2.727 4.023 10.989 Atomic orbital electron populations 1.21743 0.95028 1.01349 1.02179 1.20504 0.95929 0.93032 1.02573 1.19808 1.00335 0.96072 0.93342 1.20975 1.00307 0.94945 0.97264 1.21059 0.98968 0.94527 0.98055 1.19995 0.97763 0.96041 0.93013 1.19958 0.94179 0.90255 1.01447 0.89877 1.21860 0.97949 1.01052 0.99001 1.21411 0.95119 0.95177 1.02931 1.20439 0.79842 0.90134 0.81083 1.90532 1.61739 1.52369 1.42926 1.43463 1.19965 1.06854 1.46737 1.19100 1.30998 0.92654 1.03934 0.87417 1.25353 0.94551 0.97702 0.96686 1.69780 1.16599 1.39674 1.22252 0.87190 0.81008 0.82750 0.80338 1.19665 1.20702 1.17912 1.21387 0.96896 0.89327 0.94153 1.24747 0.79300 0.80159 0.86880 1.90613 1.58759 1.40346 1.47440 1.86524 1.58398 1.36658 1.47203 1.23129 0.93180 1.02593 0.86865 1.21074 0.99793 0.94717 0.97714 1.20931 1.00603 0.94926 0.97229 0.92693 0.92664 0.92591 0.91330 0.91229 0.86466 0.85851 0.90773 0.93175 0.93428 0.89558 0.88849 0.91268 0.87957 0.87077 0.92209 0.88756 0.92364 0.86234 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.15 0.37 -0.84 16 2 C -0.08 -0.78 6.07 -27.88 -0.17 -0.95 16 3 C -0.10 -1.15 5.13 -104.62 -0.54 -1.68 16 4 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 5 C -0.11 -1.52 8.80 -39.58 -0.35 -1.87 16 6 C -0.07 -1.02 4.78 -104.63 -0.50 -1.52 16 7 C -0.04 -0.66 2.20 -91.77 -0.20 -0.86 16 8 H 0.08 1.47 7.53 -51.93 -0.39 1.08 16 9 C -0.14 -2.24 8.74 37.16 0.32 -1.91 16 10 C -0.11 -2.06 3.60 -27.88 -0.10 -2.16 16 11 C 0.49 11.21 7.20 -10.98 -0.08 11.13 16 12 O -0.59 -14.04 13.99 5.54 0.08 -13.96 16 13 N -0.45 -10.76 1.70 -116.10 -0.20 -10.96 16 14 C -0.34 -8.74 8.98 -14.93 -0.13 -8.87 16 15 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 16 C 0.07 1.67 5.31 -17.46 -0.09 1.58 16 17 N -0.85 -22.90 13.96 55.50 0.77 -22.13 16 18 Si 0.86 18.97 24.98 -169.99 -4.25 14.72 16 19 H -0.27 -5.70 6.65 56.52 0.38 -5.32 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 22 C 0.11 2.40 4.78 -5.20 -0.02 2.37 16 23 C 0.45 10.07 8.02 36.01 0.29 10.36 16 24 O -0.49 -12.25 16.18 -18.75 -0.30 -12.55 16 25 O -0.37 -7.04 10.57 -39.27 -0.41 -7.46 16 26 C 0.04 0.54 10.56 101.05 1.07 1.61 16 27 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 28 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.67 7.18 -52.49 -0.38 1.29 16 36 H 0.07 1.32 6.35 -51.93 -0.33 0.99 16 37 H 0.05 0.73 7.24 -51.93 -0.38 0.36 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.71 7.89 -51.93 -0.41 1.30 16 40 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 41 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.10 2.26 3.01 -51.93 -0.16 2.10 16 43 H 0.11 2.27 7.49 -51.93 -0.39 1.88 16 44 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 47 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -30.40 392.58 -7.12 -37.52 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.43 Total: 8.20 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.29 Total: 0.70 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.58 Total: -33.09 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.64 Total: -33.97 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.25 Total: 14.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.40 -7.12 -37.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120670824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.737 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds