Wall clock time and date at job start Tue Mar 31 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50707 * 109.47044 * 2 1 4 4 C 1.38234 * 119.99542 * 269.72622 * 3 2 1 5 5 C 1.38245 * 119.99642 * 179.78764 * 4 3 2 6 6 C 1.38233 * 119.99687 * 0.43914 * 5 4 3 7 7 C 1.50695 * 119.99935 * 179.83255 * 6 5 4 8 8 H 1.08994 * 109.47589 * 177.35474 * 7 6 5 9 9 C 1.53000 * 109.47129 * 57.35444 * 7 6 5 10 10 C 1.53001 * 109.47293 * 297.35604 * 7 6 5 11 11 C 1.50701 * 109.47406 * 186.31933 * 10 7 6 12 12 O 1.21296 * 119.99722 * 7.66082 * 11 10 7 13 13 N 1.34779 * 120.00415 * 187.66100 * 11 10 7 14 14 C 1.37093 * 119.99498 * 355.19085 * 13 11 10 15 15 H 1.08002 * 120.00596 * 324.48698 * 14 13 11 16 16 C 1.38952 * 119.99808 * 144.48998 * 14 13 11 17 17 N 1.31417 * 120.00252 * 157.40006 * 16 14 13 18 18 Si 1.86798 * 120.00012 * 337.40177 * 16 14 13 19 19 H 1.48499 * 109.47076 * 95.11188 * 18 16 14 20 20 H 1.48500 * 109.46833 * 215.11200 * 18 16 14 21 21 H 1.48504 * 109.47151 * 335.11101 * 18 16 14 22 22 C 1.46498 * 120.00126 * 175.19156 * 13 11 10 23 23 C 1.50699 * 109.47028 * 89.99896 * 22 13 11 24 24 O 1.20824 * 120.00342 * 359.97438 * 23 22 13 25 25 O 1.34236 * 119.99633 * 179.97438 * 23 22 13 26 26 C 1.45199 * 116.99597 * 180.02562 * 25 23 22 27 27 C 1.38237 * 120.00506 * 359.81646 * 6 5 4 28 28 C 1.38232 * 120.00027 * 90.00062 * 3 2 1 29 29 H 1.09004 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47040 * 299.99826 * 1 2 3 31 31 H 1.08999 * 109.47428 * 60.00562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 119.99438 * 2 1 3 33 33 H 1.08998 * 109.47262 * 239.99754 * 2 1 3 34 34 H 1.07994 * 120.00672 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00048 * 180.27434 * 5 4 3 36 36 H 1.08998 * 109.47359 * 180.02562 * 9 7 6 37 37 H 1.09007 * 109.46803 * 300.00075 * 9 7 6 38 38 H 1.08999 * 109.47203 * 59.99655 * 9 7 6 39 39 H 1.09001 * 109.47115 * 306.32008 * 10 7 6 40 40 H 1.08996 * 109.47168 * 66.31916 * 10 7 6 41 41 H 0.96995 * 119.99974 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46794 * 209.99930 * 22 13 11 43 43 H 1.09000 * 109.47027 * 329.99711 * 22 13 11 44 44 H 1.08991 * 109.47241 * 59.99880 * 26 25 23 45 45 H 1.09001 * 109.46747 * 180.02562 * 26 25 23 46 46 H 1.09007 * 109.46992 * 299.99531 * 26 25 23 47 47 H 1.07992 * 120.00315 * 179.97438 * 27 6 5 48 48 H 1.07998 * 120.00102 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2680 2.0705 -1.1972 5 6 2.7246 3.3754 -1.1972 6 6 2.9540 4.0273 -0.0001 7 6 3.4554 5.4485 -0.0001 8 1 3.5311 5.8071 1.0264 9 6 2.4799 6.3334 -0.7787 10 6 4.8335 5.5031 -0.6624 11 6 5.4023 6.8919 -0.5248 12 8 4.8352 7.7140 0.1635 13 7 6.5411 7.2204 -1.1665 14 6 7.2348 6.2655 -1.8639 15 1 7.2735 5.2504 -1.4971 16 6 7.8881 6.6036 -3.0427 17 7 8.8867 5.8668 -3.4751 18 14 7.3471 8.1055 -4.0127 19 1 8.1872 9.2694 -3.6323 20 1 7.5003 7.8381 -5.4653 21 1 5.9236 8.4029 -3.7115 22 6 7.0376 8.5979 -1.1187 23 6 7.9553 8.7602 0.0656 24 8 8.1720 7.8218 0.7952 25 8 8.5320 9.9475 0.3099 26 6 9.4045 10.0307 1.4676 27 6 2.7233 3.3759 1.1971 28 6 2.2626 2.0725 1.1971 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 2.0926 1.5598 -2.1324 35 1 2.9046 3.8845 -2.1325 36 1 2.8427 7.3612 -0.7791 37 1 2.4042 5.9747 -1.8053 38 1 1.4981 6.2944 -0.3070 39 1 5.4984 4.7885 -0.1772 40 1 4.7391 5.2522 -1.7189 41 1 9.3425 6.1027 -4.2982 42 1 7.5846 8.8189 -2.0352 43 1 6.1962 9.2842 -1.0232 44 1 10.2262 9.3236 1.3548 45 1 9.8033 11.0418 1.5500 46 1 8.8383 9.7894 2.3673 47 1 2.9030 3.8851 2.1324 48 1 2.0823 1.5636 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120670824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:01 Heat of formation + Delta-G solvation = -114.935946 kcal Electronic energy + Delta-G solvation = -28925.566118 eV Core-core repulsion = 24944.980209 eV Total energy + Delta-G solvation = -3980.585909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.77294 -40.88398 -40.16288 -37.72252 -36.96528 -36.39460 -34.06117 -33.85191 -31.76764 -31.09909 -29.53752 -28.73873 -27.71302 -26.65809 -25.07314 -23.64773 -22.91263 -22.26655 -21.15684 -20.58479 -19.19891 -18.85436 -18.42327 -17.51304 -17.28756 -17.06812 -16.81525 -16.56858 -16.14236 -15.83125 -15.60040 -14.97163 -14.74089 -14.70236 -14.52790 -14.47232 -14.40045 -14.26075 -13.99082 -13.79233 -13.59278 -13.42904 -13.16554 -13.00410 -12.78859 -12.68242 -12.45972 -12.27781 -12.19103 -11.98499 -11.87872 -11.84416 -11.75972 -11.70477 -11.52754 -11.44147 -11.14395 -10.54625 -9.95243 -9.75600 -9.34154 -8.55869 -6.18830 0.47675 0.56588 1.10603 1.17480 1.31276 1.41923 1.48103 1.93924 2.13621 2.51675 2.88716 2.94597 3.73738 3.84238 3.87392 3.92057 3.98503 4.10373 4.11347 4.21119 4.25490 4.27215 4.28643 4.39422 4.42184 4.56239 4.59349 4.61891 4.64823 4.71244 4.77088 4.85063 4.91223 5.05858 5.10922 5.12419 5.17837 5.22570 5.24216 5.28017 5.33220 5.38736 5.43212 5.61784 5.78102 5.84223 6.00116 6.13144 6.19118 6.70286 6.87324 7.26493 7.63476 8.58566 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.003070 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.804778 B = 9117.372300 C = 9995.856386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.086 4.086 7 C -0.030 4.030 8 H 0.068 0.932 9 C -0.135 4.135 10 C -0.099 4.099 11 C 0.489 3.511 12 O -0.602 6.602 13 N -0.460 5.460 14 C -0.344 4.344 15 H 0.077 0.923 16 C 0.027 3.973 17 N -0.890 5.890 18 Si 0.914 3.086 19 H -0.251 1.251 20 H -0.275 1.275 21 H -0.248 1.248 22 C 0.099 3.901 23 C 0.450 3.550 24 O -0.524 6.524 25 O -0.366 6.366 26 C 0.028 3.972 27 C -0.127 4.127 28 C -0.122 4.122 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.283 0.717 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.055 0.945 45 H 0.142 0.858 46 H 0.058 0.942 47 H 0.123 0.877 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -3.034 3.879 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.086 4.086 7 C -0.048 4.048 8 H 0.086 0.914 9 C -0.192 4.192 10 C -0.138 4.138 11 C 0.281 3.719 12 O -0.487 6.487 13 N -0.181 5.181 14 C -0.471 4.471 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.526 5.526 18 Si 0.738 3.262 19 H -0.177 1.177 20 H -0.201 1.201 21 H -0.171 1.171 22 C -0.026 4.026 23 C 0.292 3.708 24 O -0.412 6.412 25 O -0.282 6.282 26 C -0.065 4.065 27 C -0.145 4.145 28 C -0.140 4.140 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.148 0.852 44 H 0.074 0.926 45 H 0.160 0.840 46 H 0.077 0.923 47 H 0.141 0.859 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.420 -2.954 4.320 12.562 hybrid contribution 0.813 0.474 -0.313 0.992 sum -10.606 -2.479 4.007 11.606 Atomic orbital electron populations 1.21723 0.94071 1.02375 1.01870 1.20571 0.96648 0.91232 1.03515 1.20187 0.99008 0.97343 0.92873 1.21241 0.99839 0.94457 0.98549 1.21156 0.99486 0.95383 0.97718 1.19859 0.99503 0.95214 0.94019 1.19810 0.92822 0.91986 1.00227 0.91357 1.21786 0.98327 0.99388 0.99724 1.21389 0.96352 0.92886 1.03220 1.20994 0.79490 0.91147 0.80301 1.90510 1.62001 1.53069 1.43161 1.43524 1.20296 1.07265 1.47012 1.18857 1.31422 0.92120 1.04711 0.90569 1.25956 0.94014 1.00746 0.97113 1.69858 1.17761 1.41928 1.23017 0.86317 0.81175 0.79824 0.78925 1.17657 1.20085 1.17088 1.21528 0.97766 0.88772 0.94505 1.24718 0.79063 0.80580 0.86442 1.90597 1.60168 1.41727 1.48740 1.86492 1.58496 1.34476 1.48729 1.23558 0.92289 1.05439 0.85249 1.21232 1.00133 0.95581 0.97512 1.21213 0.99892 0.94365 0.98523 0.91034 0.92909 0.92987 0.90305 0.90439 0.84599 0.85851 0.92978 0.92148 0.91823 0.90792 0.88656 0.90746 0.87527 0.85230 0.92614 0.83993 0.92296 0.85854 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.33 6.07 29.85 0.18 -1.15 16 3 C -0.09 -2.09 5.13 -19.86 -0.10 -2.19 16 4 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16 5 C -0.12 -3.33 8.80 22.27 0.20 -3.13 16 6 C -0.09 -2.58 4.78 -19.87 -0.09 -2.68 16 7 C -0.03 -1.01 2.20 -11.54 -0.03 -1.03 16 8 H 0.07 2.49 7.53 -2.39 -0.02 2.48 16 9 C -0.14 -4.26 8.74 71.98 0.63 -3.64 16 10 C -0.10 -3.96 3.60 29.85 0.11 -3.85 16 11 C 0.49 22.68 7.20 87.66 0.63 23.31 16 12 O -0.60 -28.97 13.99 -3.08 -0.04 -29.02 16 13 N -0.46 -22.35 1.70 -639.60 -1.09 -23.43 16 14 C -0.34 -18.20 8.98 84.04 0.76 -17.45 16 15 H 0.08 4.41 7.39 -2.91 -0.02 4.39 16 16 C 0.03 1.39 5.31 84.93 0.45 1.84 16 17 N -0.89 -48.88 13.96 21.66 0.30 -48.58 16 18 Si 0.91 38.37 24.98 68.60 1.71 40.08 16 19 H -0.25 -9.74 6.65 99.48 0.66 -9.07 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 22 C 0.10 4.36 4.78 85.63 0.41 4.77 16 23 C 0.45 20.08 8.02 71.24 0.57 20.65 16 24 O -0.52 -26.82 16.18 21.97 0.36 -26.46 16 25 O -0.37 -13.34 10.57 -51.47 -0.54 -13.88 16 26 C 0.03 0.76 10.56 113.37 1.20 1.96 16 27 C -0.13 -3.46 9.67 22.27 0.22 -3.25 16 28 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.12 3.33 7.18 -2.91 -0.02 3.31 16 36 H 0.05 1.86 6.35 -2.39 -0.02 1.85 16 37 H 0.06 1.75 7.24 -2.38 -0.02 1.73 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 3.11 7.89 -2.39 -0.02 3.09 16 40 H 0.10 3.73 7.58 -2.39 -0.02 3.71 16 41 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.11 4.56 3.01 -2.39 -0.01 4.55 16 43 H 0.13 5.15 7.49 -2.39 -0.02 5.14 16 44 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 45 H 0.14 2.54 8.14 -2.39 -0.02 2.53 16 46 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 47 H 0.12 3.17 7.95 -2.91 -0.02 3.14 16 48 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -66.57 392.58 7.87 -58.70 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.91 Total: 35.09 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.27 Total: 7.49 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -0.79 Total: -72.01 kcal Atomic # 8 Polarization: -69.13 SS G_CDS: -0.23 Total: -69.36 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.71 Total: 40.08 kcal Total: -66.57 7.87 -58.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120670824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.237 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds