Wall clock time and date at job start Tue Mar 31 2020 17:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99707 * 2 1 4 4 C 1.38753 * 120.05664 * 0.30604 * 3 2 1 5 5 C 1.38124 * 119.94620 * 180.20777 * 4 3 2 6 6 C 1.50692 * 119.97562 * 179.78837 * 5 4 3 7 7 C 1.50708 * 109.47119 * 269.72202 * 6 5 4 8 8 O 1.20819 * 119.99918 * 359.97438 * 7 6 5 9 9 O 1.34223 * 119.99697 * 179.72148 * 7 6 5 10 10 C 1.45205 * 116.99806 * 180.27288 * 9 7 6 11 11 C 1.53037 * 109.46307 * 270.03265 * 10 9 7 12 12 C 1.53192 * 109.31185 * 178.60106 * 11 10 9 13 13 N 1.46926 * 108.76949 * 54.65283 * 12 11 10 14 14 C 1.36935 * 120.63223 * 126.40212 * 13 12 11 15 15 H 1.08001 * 119.99906 * 331.83029 * 14 13 12 16 16 C 1.38805 * 119.99892 * 151.82435 * 14 13 12 17 17 N 1.31619 * 120.00379 * 343.08073 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 163.08443 * 16 14 13 19 19 H 1.48501 * 109.47280 * 59.99819 * 18 16 14 20 20 H 1.48501 * 109.47037 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47035 * 299.99722 * 18 16 14 22 22 C 1.46922 * 118.73516 * 306.38713 * 13 12 11 23 23 C 1.53042 * 109.45894 * 149.97392 * 10 9 7 24 24 C 1.38289 * 120.05102 * 359.50858 * 5 4 3 25 25 C 1.38242 * 120.11289 * 0.23940 * 24 5 4 26 26 C 1.38168 * 120.05941 * 359.97438 * 25 24 5 27 27 C 1.50697 * 120.03153 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.46990 * 299.99547 * 1 2 3 29 29 H 1.08992 * 109.47282 * 59.99492 * 1 2 3 30 30 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.03113 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47545 * 149.72175 * 6 5 4 33 33 H 1.09001 * 109.47132 * 29.71848 * 6 5 4 34 34 H 1.09009 * 109.45685 * 30.00289 * 10 9 7 35 35 H 1.08993 * 109.49679 * 298.56406 * 11 10 9 36 36 H 1.08995 * 109.49887 * 58.66243 * 11 10 9 37 37 H 1.09004 * 109.59849 * 294.86087 * 12 11 10 38 38 H 1.08998 * 109.70154 * 174.50834 * 12 11 10 39 39 H 0.96996 * 120.00373 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.58694 * 293.81287 * 22 13 12 41 41 H 1.08998 * 109.69984 * 173.46405 * 22 13 12 42 42 H 1.08993 * 109.49943 * 301.33701 * 23 10 9 43 43 H 1.08996 * 109.49357 * 61.40747 * 23 10 9 44 44 H 1.08002 * 119.94155 * 180.25561 * 24 5 4 45 45 H 1.08007 * 119.97370 * 180.02562 * 25 24 5 46 46 H 1.08990 * 109.47600 * 90.00060 * 27 26 25 47 47 H 1.09001 * 109.46671 * 210.00465 * 27 26 25 48 48 H 1.09006 * 109.46802 * 329.99696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0064 5 6 1.9207 3.6048 0.0021 6 6 1.1018 4.8698 0.0042 7 6 0.8282 5.2935 -1.4160 8 8 1.2548 4.6360 -2.3354 9 8 0.1062 6.3986 -1.6593 10 6 -0.1230 6.7430 -3.0512 11 6 1.0053 7.6519 -3.5440 12 6 0.7787 7.9847 -5.0221 13 7 -0.5665 8.5547 -5.1775 14 6 -0.7451 9.7628 -5.7970 15 1 0.0404 10.5036 -5.7723 16 6 -1.9355 10.0351 -6.4569 17 7 -2.7491 9.0520 -6.7794 18 14 -2.3830 11.7970 -6.8873 19 1 -1.3407 12.3692 -7.7768 20 1 -3.6947 11.8187 -7.5830 21 1 -2.4696 12.6036 -5.6435 22 6 -1.7165 7.8036 -4.6559 23 6 -1.4619 7.4727 -3.1820 24 6 3.3018 3.6759 0.0016 25 6 4.0559 2.5172 0.0005 26 6 3.4311 1.2849 0.0004 27 6 4.2537 0.0223 -0.0003 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2128 2.3204 0.0110 32 1 1.6516 5.6578 0.5189 33 1 0.1575 4.6904 0.5181 34 1 -0.1450 5.8333 -3.6515 35 1 1.0120 8.5725 -2.9606 36 1 1.9609 7.1406 -3.4288 37 1 0.8617 7.0759 -5.6184 38 1 1.5229 8.7086 -5.3540 39 1 -3.5811 9.2424 -7.2401 40 1 -1.8372 6.8802 -5.2223 41 1 -2.6200 8.4070 -4.7441 42 1 -2.2624 6.8338 -2.8091 43 1 -1.4319 8.3947 -2.6015 44 1 3.7920 4.6382 0.0024 45 1 5.1344 2.5753 0.0005 46 1 4.4525 -0.2825 1.0271 47 1 3.7062 -0.7678 -0.5142 48 1 5.1976 0.2039 -0.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120746443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:49 Heat of formation + Delta-G solvation = -87.759792 kcal Electronic energy + Delta-G solvation = -28418.172096 eV Core-core repulsion = 24438.764634 eV Total energy + Delta-G solvation = -3979.407462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.75690 -40.11768 -37.98831 -37.31218 -35.79862 -34.02889 -32.70952 -30.55779 -30.38304 -30.05994 -29.50910 -27.83071 -25.94901 -24.94794 -22.60876 -22.48782 -22.17968 -21.41378 -20.39792 -19.32832 -17.77036 -17.50783 -16.97162 -16.72173 -16.06153 -15.89325 -15.73997 -15.67537 -14.83893 -14.52371 -14.17325 -13.98710 -13.74570 -13.60196 -13.38541 -13.17509 -13.10978 -12.86678 -12.62675 -12.44385 -12.31399 -12.18845 -12.01338 -11.54441 -11.52124 -11.28794 -11.21566 -11.10718 -11.05601 -10.74612 -10.74096 -10.46654 -10.25924 -10.19694 -9.90519 -9.67881 -9.45362 -8.95166 -8.50790 -8.28941 -6.74558 -5.83287 -3.26125 1.02356 1.25090 2.37773 2.89041 3.03479 3.37200 3.42749 3.44111 3.60055 4.28606 4.46665 4.53289 4.70149 4.80091 4.87229 4.89568 4.95519 5.00988 5.20011 5.22436 5.25227 5.30001 5.35364 5.36888 5.41330 5.43780 5.46019 5.52196 5.62463 5.73126 5.94891 5.99985 6.06980 6.21625 6.24539 6.35047 6.36732 6.40762 6.49172 6.55867 6.57646 6.71306 6.86061 6.95958 7.14771 7.26462 7.56045 7.75891 7.98823 8.40257 9.16118 9.78836 10.35654 11.25977 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.002147 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.301367 B =13038.308278 C =13419.818554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.187 4.187 5 C -0.039 4.039 6 C -0.077 4.077 7 C 0.457 3.543 8 O -0.501 6.501 9 O -0.358 6.358 10 C 0.099 3.901 11 C -0.145 4.145 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.904 5.904 18 Si 0.905 3.095 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.174 3.826 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.082 4.082 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.061 0.939 39 H 0.255 0.745 40 H 0.022 0.978 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 -15.769 18.272 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.039 4.039 6 C -0.114 4.114 7 C 0.299 3.701 8 O -0.388 6.388 9 O -0.275 6.275 10 C 0.045 3.955 11 C -0.185 4.185 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.735 3.265 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.048 3.952 23 C -0.174 4.174 24 C -0.153 4.153 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.907 -16.117 17.835 25.636 hybrid contribution -0.599 1.029 -0.394 1.255 sum 8.308 -15.088 17.440 24.512 Atomic orbital electron populations 1.23074 0.78361 1.03934 1.01556 1.86043 1.21337 1.26735 1.88786 1.18730 0.91751 0.84056 0.97383 1.21032 0.99911 0.91721 1.07863 1.19032 0.93606 0.92753 0.98539 1.20325 1.02339 0.96548 0.92229 1.23360 0.75812 0.78929 0.92025 1.90680 1.48128 1.53437 1.46574 1.86547 1.65553 1.41988 1.33451 1.22943 0.97329 0.98229 0.77001 1.22452 0.96473 0.99177 1.00392 1.20860 0.89054 0.96800 0.91076 1.44108 1.00216 1.21185 1.65999 1.19151 1.01681 0.90429 1.27156 0.91555 1.25072 0.99300 0.97539 0.97692 1.70007 1.12692 1.29772 1.42331 0.86333 0.77520 0.84573 0.78121 1.20819 1.21603 1.20954 1.20806 0.92756 0.95590 0.86071 1.22457 0.93110 0.99461 1.02418 1.20902 0.92892 0.98717 1.02775 1.20827 0.99781 0.90887 0.98546 1.19272 0.90602 0.96279 1.05569 1.20598 0.98768 0.94576 1.02108 0.92660 0.92456 0.88216 0.85485 0.86694 0.87018 0.90409 0.91369 0.92694 0.96084 0.92083 0.93454 0.96032 0.88552 0.92462 0.91449 0.85779 0.85233 0.91498 0.91222 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.34 9.54 -19.43 -0.19 -3.53 16 3 C 0.13 1.45 6.66 -39.22 -0.26 1.18 16 4 C -0.19 -2.10 8.69 -39.43 -0.34 -2.44 16 5 C -0.04 -0.44 4.37 -104.65 -0.46 -0.90 16 6 C -0.08 -0.79 5.94 -29.03 -0.17 -0.97 16 7 C 0.46 6.84 7.92 36.01 0.29 7.13 16 8 O -0.50 -9.12 15.25 -18.74 -0.29 -9.40 16 9 O -0.36 -5.89 9.88 -39.24 -0.39 -6.28 16 10 C 0.10 1.84 2.41 -26.69 -0.06 1.78 16 11 C -0.15 -2.74 5.72 -26.61 -0.15 -2.90 16 12 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 13 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 14 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 15 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 17 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 18 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 23 C -0.14 -2.65 5.74 -26.61 -0.15 -2.80 16 24 C -0.13 -1.44 9.70 -39.56 -0.38 -1.83 16 25 C -0.08 -0.83 9.70 -39.61 -0.38 -1.21 16 26 C -0.12 -1.25 5.89 -104.47 -0.62 -1.87 16 27 C -0.10 -0.87 9.79 36.00 0.35 -0.52 16 28 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 29 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 32 H 0.11 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.08 1.56 7.16 -51.92 -0.37 1.19 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 2.53 6.07 -51.93 -0.31 2.22 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 48 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -32.52 390.44 -9.18 -41.70 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.65 Total: 0.00 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.63 Total: -3.95 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.11 Total: -40.93 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.86 Total: -19.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.52 -9.18 -41.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120746443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.055 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds