Wall clock time and date at job start Tue Mar 31 2020 17:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99707 * 2 1 4 4 C 1.38753 * 120.05664 * 0.30604 * 3 2 1 5 5 C 1.38124 * 119.94620 * 180.20777 * 4 3 2 6 6 C 1.50692 * 119.97562 * 179.78837 * 5 4 3 7 7 C 1.50708 * 109.47119 * 269.72202 * 6 5 4 8 8 O 1.20819 * 119.99918 * 359.97438 * 7 6 5 9 9 O 1.34223 * 119.99697 * 179.72148 * 7 6 5 10 10 C 1.45205 * 116.99806 * 180.27288 * 9 7 6 11 11 C 1.53037 * 109.46307 * 270.03265 * 10 9 7 12 12 C 1.53192 * 109.31185 * 178.60106 * 11 10 9 13 13 N 1.46926 * 108.76949 * 54.65283 * 12 11 10 14 14 C 1.36935 * 120.63223 * 126.40212 * 13 12 11 15 15 H 1.08001 * 119.99906 * 331.83029 * 14 13 12 16 16 C 1.38805 * 119.99892 * 151.82435 * 14 13 12 17 17 N 1.31619 * 120.00379 * 343.08073 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 163.08443 * 16 14 13 19 19 H 1.48501 * 109.47280 * 59.99819 * 18 16 14 20 20 H 1.48501 * 109.47037 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47035 * 299.99722 * 18 16 14 22 22 C 1.46922 * 118.73516 * 306.38713 * 13 12 11 23 23 C 1.53042 * 109.45894 * 149.97392 * 10 9 7 24 24 C 1.38289 * 120.05102 * 359.50858 * 5 4 3 25 25 C 1.38242 * 120.11289 * 0.23940 * 24 5 4 26 26 C 1.38168 * 120.05941 * 359.97438 * 25 24 5 27 27 C 1.50697 * 120.03153 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.46990 * 299.99547 * 1 2 3 29 29 H 1.08992 * 109.47282 * 59.99492 * 1 2 3 30 30 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.03113 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47545 * 149.72175 * 6 5 4 33 33 H 1.09001 * 109.47132 * 29.71848 * 6 5 4 34 34 H 1.09009 * 109.45685 * 30.00289 * 10 9 7 35 35 H 1.08993 * 109.49679 * 298.56406 * 11 10 9 36 36 H 1.08995 * 109.49887 * 58.66243 * 11 10 9 37 37 H 1.09004 * 109.59849 * 294.86087 * 12 11 10 38 38 H 1.08998 * 109.70154 * 174.50834 * 12 11 10 39 39 H 0.96996 * 120.00373 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.58694 * 293.81287 * 22 13 12 41 41 H 1.08998 * 109.69984 * 173.46405 * 22 13 12 42 42 H 1.08993 * 109.49943 * 301.33701 * 23 10 9 43 43 H 1.08996 * 109.49357 * 61.40747 * 23 10 9 44 44 H 1.08002 * 119.94155 * 180.25561 * 24 5 4 45 45 H 1.08007 * 119.97370 * 180.02562 * 25 24 5 46 46 H 1.08990 * 109.47600 * 90.00060 * 27 26 25 47 47 H 1.09001 * 109.46671 * 210.00465 * 27 26 25 48 48 H 1.09006 * 109.46802 * 329.99696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0064 5 6 1.9207 3.6048 0.0021 6 6 1.1018 4.8698 0.0042 7 6 0.8282 5.2935 -1.4160 8 8 1.2548 4.6360 -2.3354 9 8 0.1062 6.3986 -1.6593 10 6 -0.1230 6.7430 -3.0512 11 6 1.0053 7.6519 -3.5440 12 6 0.7787 7.9847 -5.0221 13 7 -0.5665 8.5547 -5.1775 14 6 -0.7451 9.7628 -5.7970 15 1 0.0404 10.5036 -5.7723 16 6 -1.9355 10.0351 -6.4569 17 7 -2.7491 9.0520 -6.7794 18 14 -2.3830 11.7970 -6.8873 19 1 -1.3407 12.3692 -7.7768 20 1 -3.6947 11.8187 -7.5830 21 1 -2.4696 12.6036 -5.6435 22 6 -1.7165 7.8036 -4.6559 23 6 -1.4619 7.4727 -3.1820 24 6 3.3018 3.6759 0.0016 25 6 4.0559 2.5172 0.0005 26 6 3.4311 1.2849 0.0004 27 6 4.2537 0.0223 -0.0003 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2128 2.3204 0.0110 32 1 1.6516 5.6578 0.5189 33 1 0.1575 4.6904 0.5181 34 1 -0.1450 5.8333 -3.6515 35 1 1.0120 8.5725 -2.9606 36 1 1.9609 7.1406 -3.4288 37 1 0.8617 7.0759 -5.6184 38 1 1.5229 8.7086 -5.3540 39 1 -3.5811 9.2424 -7.2401 40 1 -1.8372 6.8802 -5.2223 41 1 -2.6200 8.4070 -4.7441 42 1 -2.2624 6.8338 -2.8091 43 1 -1.4319 8.3947 -2.6015 44 1 3.7920 4.6382 0.0024 45 1 5.1344 2.5753 0.0005 46 1 4.4525 -0.2825 1.0271 47 1 3.7062 -0.7678 -0.5142 48 1 5.1976 0.2039 -0.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120746443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:48 Heat of formation + Delta-G solvation = -104.415759 kcal Electronic energy + Delta-G solvation = -28418.894353 eV Core-core repulsion = 24438.764634 eV Total energy + Delta-G solvation = -3980.129719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.81446 -41.09750 -39.24033 -38.45221 -37.25874 -34.86963 -34.55717 -32.22249 -31.55707 -31.13509 -30.77506 -28.45007 -27.31838 -26.32669 -24.19955 -23.85907 -23.22650 -22.49257 -21.48565 -21.04357 -18.92384 -18.76075 -18.48265 -17.61697 -17.23795 -16.94824 -16.74822 -16.67259 -16.47140 -15.70981 -15.43731 -15.26361 -14.95883 -14.91662 -14.61237 -14.48883 -14.32583 -14.20358 -13.82093 -13.49950 -13.29838 -13.07675 -12.97773 -12.89322 -12.76585 -12.61552 -12.58838 -12.50072 -12.23592 -12.16380 -12.02351 -11.99527 -11.88272 -11.81556 -11.56187 -11.37831 -11.06861 -10.56856 -9.72893 -9.06453 -8.77551 -7.91541 -5.37987 0.21799 0.46769 1.21091 1.48141 1.50415 1.57505 1.72323 2.36821 2.50037 2.76590 3.25049 3.47556 3.55557 3.75533 3.80884 3.82465 3.85954 4.00124 4.14476 4.17191 4.26649 4.27859 4.34304 4.35235 4.51335 4.54539 4.59614 4.64529 4.70328 4.72126 4.76297 4.81504 4.84064 4.85109 4.92396 4.97288 5.02537 5.19920 5.27065 5.32726 5.38136 5.49821 5.51843 5.57166 5.61479 5.68074 5.84534 6.34841 6.41506 6.76039 7.09652 7.77921 8.31259 9.16140 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.002147 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.301367 B =13038.308278 C =13419.818554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.107 3.893 4 C -0.199 4.199 5 C -0.055 4.055 6 C -0.067 4.067 7 C 0.456 3.544 8 O -0.536 6.536 9 O -0.353 6.353 10 C 0.106 3.894 11 C -0.132 4.132 12 C 0.146 3.854 13 N -0.610 5.610 14 C -0.267 4.267 15 H 0.070 0.930 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.180 3.820 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.088 4.088 26 C -0.132 4.132 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.011 0.989 38 H 0.066 0.934 39 H 0.252 0.748 40 H -0.002 1.002 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.139 0.861 45 H 0.153 0.847 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -15.404 20.247 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.062 3.938 4 C -0.217 4.217 5 C -0.055 4.055 6 C -0.104 4.104 7 C 0.301 3.699 8 O -0.425 6.425 9 O -0.270 6.270 10 C 0.052 3.948 11 C -0.171 4.171 12 C 0.020 3.980 13 N -0.334 5.334 14 C -0.397 4.397 15 H 0.088 0.912 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.201 1.201 22 C 0.054 3.946 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.106 4.106 26 C -0.132 4.132 27 C -0.158 4.158 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.157 0.843 45 H 0.170 0.830 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.880 -15.760 19.841 27.197 hybrid contribution -0.843 0.799 -1.003 1.534 sum 9.037 -14.961 18.838 25.698 Atomic orbital electron populations 1.23292 0.76950 1.05483 1.01796 1.86022 1.22890 1.26608 1.88802 1.19004 0.92401 0.84461 0.97913 1.21243 1.00571 0.91910 1.07991 1.19223 0.94117 0.93038 0.99154 1.20460 1.03981 0.96875 0.89033 1.24321 0.74339 0.77643 0.93614 1.90678 1.49485 1.54248 1.48135 1.86548 1.66140 1.42962 1.31343 1.22574 0.96633 0.97273 0.78361 1.22253 0.97197 0.99552 0.98076 1.20954 0.87641 0.96288 0.93091 1.44369 1.01646 1.21081 1.66274 1.19495 1.01905 0.91387 1.26923 0.91228 1.25861 0.99332 1.01270 0.98019 1.70165 1.12931 1.31683 1.43377 0.85283 0.76888 0.79947 0.77964 1.20111 1.21999 1.20134 1.20589 0.91639 0.93793 0.88600 1.22169 0.94586 1.00140 0.99109 1.21211 0.92992 0.99676 1.02470 1.21151 1.01048 0.90501 0.97856 1.19668 0.90842 0.97452 1.05283 1.20614 0.98871 0.93413 1.02870 0.91460 0.93114 0.86109 0.84591 0.83792 0.84394 0.92108 0.90856 0.91276 0.97122 0.91533 0.93876 0.98352 0.91277 0.90460 0.91194 0.84306 0.82976 0.90406 0.92088 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -6.82 9.54 -92.45 -0.88 -7.71 16 3 C 0.11 2.40 6.66 22.51 0.15 2.55 16 4 C -0.20 -4.25 8.69 22.37 0.19 -4.06 16 5 C -0.06 -1.14 4.37 -19.88 -0.09 -1.23 16 6 C -0.07 -1.18 5.94 29.10 0.17 -1.01 16 7 C 0.46 12.75 7.92 71.24 0.56 13.31 16 8 O -0.54 -19.02 15.25 21.98 0.34 -18.68 16 9 O -0.35 -10.82 9.88 -51.35 -0.51 -11.33 16 10 C 0.11 3.86 2.41 30.62 0.07 3.93 16 11 C -0.13 -4.79 5.72 30.67 0.18 -4.62 16 12 C 0.15 6.33 6.52 86.36 0.56 6.90 16 13 N -0.61 -31.18 2.99 -699.11 -2.09 -33.27 16 14 C -0.27 -14.71 9.58 84.03 0.81 -13.90 16 15 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 16 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 17 N -0.94 -55.20 11.19 21.65 0.24 -54.96 16 18 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.18 8.77 5.30 86.36 0.46 9.22 16 23 C -0.12 -4.65 5.74 30.67 0.18 -4.48 16 24 C -0.15 -2.83 9.70 22.28 0.22 -2.62 16 25 C -0.09 -1.62 9.70 22.25 0.22 -1.40 16 26 C -0.13 -2.70 5.89 -19.77 -0.12 -2.81 16 27 C -0.10 -1.59 9.79 71.23 0.70 -0.89 16 28 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 29 H 0.05 0.76 7.67 -2.39 -0.02 0.74 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.14 2.48 6.30 -2.91 -0.02 2.47 16 32 H 0.14 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.14 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.06 2.44 7.16 -2.38 -0.02 2.42 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 45 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.05 7.53 -2.39 -0.02 1.03 16 48 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 Total: -1.00 -70.88 390.44 5.86 -65.02 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.94 Total: 16.51 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.79 Total: -2.05 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.85 Total: -88.23 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.05 Total: -37.71 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.88 5.86 -65.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120746443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.397 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds