Wall clock time and date at job start Tue Mar 31 2020 17:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38287 * 119.94886 * 2 1 4 4 C 1.38122 * 120.05857 * 179.97438 * 3 2 1 5 5 C 1.38749 * 119.94425 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05897 * 180.02562 * 5 4 3 7 7 C 1.42904 * 116.99670 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.47228 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99775 * 359.97438 * 8 7 6 10 10 O 1.34234 * 120.00110 * 179.97438 * 8 7 6 11 11 C 1.45203 * 116.99838 * 179.97438 * 10 8 7 12 12 C 1.53033 * 109.46097 * 270.02887 * 11 10 8 13 13 C 1.53196 * 109.30997 * 178.60055 * 12 11 10 14 14 N 1.46926 * 108.76196 * 54.65967 * 13 12 11 15 15 C 1.36944 * 120.63117 * 126.40542 * 14 13 12 16 16 H 1.07998 * 119.99925 * 332.60848 * 15 14 13 17 17 C 1.38810 * 119.99887 * 152.60547 * 15 14 13 18 18 N 1.31614 * 119.99846 * 159.34757 * 17 15 14 19 19 Si 1.86804 * 120.00096 * 339.34004 * 17 15 14 20 20 H 1.48503 * 109.46674 * 92.94580 * 19 17 15 21 21 H 1.48494 * 109.47331 * 212.94371 * 19 17 15 22 22 H 1.48498 * 109.47302 * 332.94903 * 19 17 15 23 23 C 1.46927 * 118.73964 * 306.37572 * 14 13 12 24 24 C 1.53039 * 109.45635 * 149.97401 * 11 10 8 25 25 C 1.38714 * 119.88741 * 0.28228 * 5 4 3 26 26 C 1.50697 * 120.02798 * 179.72295 * 25 5 4 27 27 C 1.38164 * 119.94288 * 359.39862 * 25 5 4 28 28 H 1.08998 * 109.47300 * 90.00115 * 1 2 3 29 29 H 1.09002 * 109.47113 * 210.00506 * 1 2 3 30 30 H 1.09004 * 109.47087 * 330.00438 * 1 2 3 31 31 H 1.08003 * 119.96612 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.02877 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46960 * 299.99880 * 7 6 5 34 34 H 1.08994 * 109.47634 * 59.99434 * 7 6 5 35 35 H 1.08999 * 109.45824 * 30.00613 * 11 10 8 36 36 H 1.09000 * 109.50004 * 298.56516 * 12 11 10 37 37 H 1.09000 * 109.49937 * 58.66929 * 12 11 10 38 38 H 1.08999 * 109.59996 * 294.86882 * 13 12 11 39 39 H 1.08998 * 109.70153 * 174.50397 * 13 12 11 40 40 H 0.97006 * 119.99953 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.58842 * 293.82675 * 23 14 13 42 42 H 1.08999 * 109.70506 * 173.46502 * 23 14 13 43 43 H 1.09003 * 109.49745 * 301.33920 * 24 11 10 44 44 H 1.08999 * 109.49803 * 61.40530 * 24 11 10 45 45 H 1.09000 * 109.47085 * 89.99749 * 26 25 5 46 46 H 1.08993 * 109.47296 * 209.99738 * 26 25 5 47 47 H 1.09005 * 109.47370 * 330.00489 * 26 25 5 48 48 H 1.08001 * 119.97337 * 180.31647 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2369 -0.0410 0.0051 10 8 8.5929 2.1401 0.0060 11 6 10.0205 1.8747 0.0081 12 6 10.5195 1.7808 1.4518 13 6 12.0188 1.4661 1.4501 14 7 12.7123 2.4741 0.6365 15 6 13.7670 3.1803 1.1504 16 1 13.8345 3.3522 2.2145 17 6 14.7493 3.6753 0.3037 18 7 15.5196 4.6668 0.6982 19 14 14.9780 2.9338 -1.3956 20 1 14.1777 3.7022 -2.3826 21 1 16.4136 2.9900 -1.7710 22 1 14.5244 1.5198 -1.3839 23 6 12.2531 2.7095 -0.7392 24 6 10.7511 3.0098 -0.7129 25 6 3.5786 -1.2007 -0.0059 26 6 4.3302 -2.5069 -0.0123 27 6 2.1970 -1.1979 0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6559 2.1327 -0.0004 32 1 4.1172 2.1369 0.0001 33 1 5.9890 1.8309 -0.8865 34 1 5.9877 1.8294 0.8934 35 1 10.2155 0.9333 -0.5055 36 1 10.3474 2.7303 1.9587 37 1 9.9822 0.9876 1.9716 38 1 12.1842 0.4763 1.0247 39 1 12.4013 1.4940 2.4704 40 1 16.2058 5.0130 0.1063 41 1 12.4376 1.8210 -1.3431 42 1 12.7880 3.5583 -1.1650 43 1 10.3785 3.0915 -1.7340 44 1 10.5763 3.9477 -0.1857 45 1 4.5109 -2.8270 1.0139 46 1 3.7402 -3.2630 -0.5302 47 1 5.2831 -2.3754 -0.5249 48 1 1.6556 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120820981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:08 Heat of formation + Delta-G solvation = -79.431994 kcal Electronic energy + Delta-G solvation = -28077.392338 eV Core-core repulsion = 24098.345996 eV Total energy + Delta-G solvation = -3979.046342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.97333 -40.28249 -38.28481 -37.56005 -36.05389 -33.60754 -32.77459 -31.97102 -30.80465 -30.49227 -29.33263 -27.54173 -26.37003 -25.18624 -23.25615 -22.81804 -21.98166 -21.06053 -20.79383 -19.69032 -18.62999 -17.55665 -17.16640 -16.93295 -16.67578 -15.83752 -15.45712 -15.31524 -15.04966 -14.70671 -14.25755 -14.20284 -13.91792 -13.82336 -13.53276 -13.49964 -13.22769 -13.13372 -12.91147 -12.72432 -12.47885 -12.25216 -12.20320 -12.09139 -11.90793 -11.65864 -11.40730 -11.22673 -11.21127 -10.91879 -10.84758 -10.57584 -10.45209 -10.17292 -9.92293 -9.80590 -9.46693 -9.17591 -8.69883 -8.34461 -7.07690 -5.99694 -3.36661 0.95903 1.03775 1.96532 2.08192 3.27395 3.30609 3.34142 3.45720 3.48151 4.31620 4.41113 4.47580 4.49424 4.53734 4.63426 4.64551 4.85644 4.87806 4.92279 5.05602 5.08196 5.13111 5.22756 5.28181 5.31841 5.32896 5.47129 5.47523 5.54516 5.57539 5.70431 5.92262 5.92378 5.96477 5.99155 6.06943 6.10756 6.17468 6.24281 6.26695 6.41879 6.48587 6.53065 6.56049 6.60585 6.86331 6.97076 7.70571 7.89033 8.27613 8.86883 9.65750 10.01797 11.15968 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.001970 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.475964 B =14212.030997 C =14429.628887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.201 4.201 5 C 0.123 3.877 6 O -0.291 6.291 7 C 0.068 3.932 8 C 0.461 3.539 9 O -0.486 6.486 10 O -0.351 6.351 11 C 0.100 3.900 12 C -0.149 4.149 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.263 4.263 16 H 0.088 0.912 17 C 0.024 3.976 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.109 4.109 27 C -0.084 4.084 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.785 -8.533 -2.498 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.220 4.220 5 C 0.078 3.922 6 O -0.204 6.204 7 C -0.009 4.009 8 C 0.301 3.699 9 O -0.372 6.372 10 O -0.269 6.269 11 C 0.046 3.954 12 C -0.188 4.188 13 C 0.026 3.974 14 N -0.329 5.329 15 C -0.391 4.391 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.710 3.290 20 H -0.215 1.215 21 H -0.229 1.229 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.169 4.169 25 C -0.107 4.107 26 C -0.165 4.165 27 C -0.102 4.102 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -29.277 -8.921 -2.505 30.709 hybrid contribution 0.232 -0.052 -0.997 1.025 sum -29.045 -8.973 -3.502 30.601 Atomic orbital electron populations 1.20723 0.91014 1.02682 1.02192 1.19839 0.96246 0.92979 1.03057 1.20807 0.93168 0.97770 0.98644 1.21270 0.95577 0.96886 1.08283 1.18802 0.81431 0.93994 0.97975 1.86083 1.16572 1.28912 1.88825 1.21913 0.87838 0.85846 1.05271 1.22748 0.89396 0.83832 0.73897 1.90703 1.77459 1.25419 1.43601 1.86506 1.20804 1.36273 1.83287 1.22964 0.73414 1.00490 0.98505 1.22482 0.99313 1.02381 0.94640 1.20887 0.88637 0.91332 0.96577 1.44432 1.35671 1.42401 1.10381 1.18925 0.98293 1.27256 0.94585 0.89487 1.25284 0.96535 0.97714 0.97942 1.69832 1.23134 1.24443 1.37395 0.86994 0.76120 0.80627 0.85248 1.21506 1.22932 1.19490 1.21382 0.90975 0.99649 0.87726 1.22265 0.97107 0.98033 0.99451 1.19284 0.93222 0.93571 1.04595 1.20653 1.00365 0.92907 1.02614 1.20775 0.92231 0.97922 0.99306 0.91377 0.91652 0.91652 0.85689 0.85126 0.87782 0.87698 0.89990 0.90733 0.92101 0.95483 0.91001 0.92678 0.95313 0.89951 0.91804 0.90298 0.91172 0.91666 0.90689 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.12 -0.92 5.88 -104.60 -0.62 -1.53 16 3 C -0.09 -0.66 9.69 -39.61 -0.38 -1.05 16 4 C -0.20 -1.74 9.04 -39.44 -0.36 -2.09 16 5 C 0.12 1.30 6.66 -39.22 -0.26 1.04 16 6 O -0.29 -3.50 8.72 -39.38 -0.34 -3.84 16 7 C 0.07 0.68 5.33 36.00 0.19 0.87 16 8 C 0.46 6.49 8.01 36.00 0.29 6.78 16 9 O -0.49 -8.47 15.72 -25.48 -0.40 -8.87 16 10 O -0.35 -5.23 9.88 -39.27 -0.39 -5.62 16 11 C 0.10 1.69 2.42 -26.69 -0.06 1.62 16 12 C -0.15 -2.57 5.72 -26.61 -0.15 -2.72 16 13 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 14 N -0.61 -14.25 2.77 -172.32 -0.48 -14.72 16 15 C -0.26 -7.24 10.04 -15.06 -0.15 -7.39 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.91 -27.41 13.97 55.49 0.78 -26.63 16 19 Si 0.88 22.03 24.35 -169.99 -4.14 17.89 16 20 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 21 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 22 H -0.27 -6.68 6.63 56.52 0.37 -6.30 16 23 C 0.13 2.76 4.20 -3.71 -0.02 2.75 16 24 C -0.13 -2.28 5.74 -26.61 -0.15 -2.44 16 25 C -0.11 -1.04 5.89 -104.47 -0.62 -1.66 16 26 C -0.11 -0.98 9.79 36.00 0.35 -0.63 16 27 C -0.08 -0.69 9.35 -39.61 -0.37 -1.06 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 33 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 34 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.08 1.45 7.15 -51.93 -0.37 1.08 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 42 H 0.08 1.91 4.50 -51.93 -0.23 1.68 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 47 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -32.71 384.81 -8.81 -41.53 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.58 Total: -1.44 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.06 Total: -4.10 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.30 Total: -41.36 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.13 Total: -18.33 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.71 -8.81 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120820981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.905 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds