Wall clock time and date at job start Tue Mar 31 2020 17:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38287 * 119.94886 * 2 1 4 4 C 1.38122 * 120.05857 * 179.97438 * 3 2 1 5 5 C 1.38749 * 119.94425 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05897 * 180.02562 * 5 4 3 7 7 C 1.42904 * 116.99670 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.47228 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99775 * 359.97438 * 8 7 6 10 10 O 1.34234 * 120.00110 * 179.97438 * 8 7 6 11 11 C 1.45203 * 116.99838 * 179.97438 * 10 8 7 12 12 C 1.53033 * 109.46097 * 270.02887 * 11 10 8 13 13 C 1.53196 * 109.30997 * 178.60055 * 12 11 10 14 14 N 1.46926 * 108.76196 * 54.65967 * 13 12 11 15 15 C 1.36944 * 120.63117 * 126.40542 * 14 13 12 16 16 H 1.07998 * 119.99925 * 332.60848 * 15 14 13 17 17 C 1.38810 * 119.99887 * 152.60547 * 15 14 13 18 18 N 1.31614 * 119.99846 * 159.34757 * 17 15 14 19 19 Si 1.86804 * 120.00096 * 339.34004 * 17 15 14 20 20 H 1.48503 * 109.46674 * 92.94580 * 19 17 15 21 21 H 1.48494 * 109.47331 * 212.94371 * 19 17 15 22 22 H 1.48498 * 109.47302 * 332.94903 * 19 17 15 23 23 C 1.46927 * 118.73964 * 306.37572 * 14 13 12 24 24 C 1.53039 * 109.45635 * 149.97401 * 11 10 8 25 25 C 1.38714 * 119.88741 * 0.28228 * 5 4 3 26 26 C 1.50697 * 120.02798 * 179.72295 * 25 5 4 27 27 C 1.38164 * 119.94288 * 359.39862 * 25 5 4 28 28 H 1.08998 * 109.47300 * 90.00115 * 1 2 3 29 29 H 1.09002 * 109.47113 * 210.00506 * 1 2 3 30 30 H 1.09004 * 109.47087 * 330.00438 * 1 2 3 31 31 H 1.08003 * 119.96612 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.02877 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46960 * 299.99880 * 7 6 5 34 34 H 1.08994 * 109.47634 * 59.99434 * 7 6 5 35 35 H 1.08999 * 109.45824 * 30.00613 * 11 10 8 36 36 H 1.09000 * 109.50004 * 298.56516 * 12 11 10 37 37 H 1.09000 * 109.49937 * 58.66929 * 12 11 10 38 38 H 1.08999 * 109.59996 * 294.86882 * 13 12 11 39 39 H 1.08998 * 109.70153 * 174.50397 * 13 12 11 40 40 H 0.97006 * 119.99953 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.58842 * 293.82675 * 23 14 13 42 42 H 1.08999 * 109.70506 * 173.46502 * 23 14 13 43 43 H 1.09003 * 109.49745 * 301.33920 * 24 11 10 44 44 H 1.08999 * 109.49803 * 61.40530 * 24 11 10 45 45 H 1.09000 * 109.47085 * 89.99749 * 26 25 5 46 46 H 1.08993 * 109.47296 * 209.99738 * 26 25 5 47 47 H 1.09005 * 109.47370 * 330.00489 * 26 25 5 48 48 H 1.08001 * 119.97337 * 180.31647 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6324 -0.0002 0.0016 7 6 6.2812 1.2731 0.0032 8 6 7.7752 1.0756 0.0048 9 8 8.2369 -0.0410 0.0051 10 8 8.5929 2.1401 0.0060 11 6 10.0205 1.8747 0.0081 12 6 10.5195 1.7808 1.4518 13 6 12.0188 1.4661 1.4501 14 7 12.7123 2.4741 0.6365 15 6 13.7670 3.1803 1.1504 16 1 13.8345 3.3522 2.2145 17 6 14.7493 3.6753 0.3037 18 7 15.5196 4.6668 0.6982 19 14 14.9780 2.9338 -1.3956 20 1 14.1777 3.7022 -2.3826 21 1 16.4136 2.9900 -1.7710 22 1 14.5244 1.5198 -1.3839 23 6 12.2531 2.7095 -0.7392 24 6 10.7511 3.0098 -0.7129 25 6 3.5786 -1.2007 -0.0059 26 6 4.3302 -2.5069 -0.0123 27 6 2.1970 -1.1979 0.0002 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6559 2.1327 -0.0004 32 1 4.1172 2.1369 0.0001 33 1 5.9890 1.8309 -0.8865 34 1 5.9877 1.8294 0.8934 35 1 10.2155 0.9333 -0.5055 36 1 10.3474 2.7303 1.9587 37 1 9.9822 0.9876 1.9716 38 1 12.1842 0.4763 1.0247 39 1 12.4013 1.4940 2.4704 40 1 16.2058 5.0130 0.1063 41 1 12.4376 1.8210 -1.3431 42 1 12.7880 3.5583 -1.1650 43 1 10.3785 3.0915 -1.7340 44 1 10.5763 3.9477 -0.1857 45 1 4.5109 -2.8270 1.0139 46 1 3.7402 -3.2630 -0.5302 47 1 5.2831 -2.3754 -0.5249 48 1 1.6556 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120820981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:07 Heat of formation + Delta-G solvation = -96.997220 kcal Electronic energy + Delta-G solvation = -28078.154023 eV Core-core repulsion = 24098.345996 eV Total energy + Delta-G solvation = -3979.808027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96322 -41.16519 -39.45007 -38.63813 -37.39044 -34.67898 -34.20425 -32.59886 -32.48309 -32.09330 -30.26465 -28.13169 -27.17295 -26.74580 -24.75061 -24.01224 -23.28364 -21.92010 -21.64160 -21.25566 -19.42962 -18.99475 -18.50004 -17.93025 -17.82674 -17.18827 -16.62465 -16.41066 -16.01141 -15.83929 -15.45416 -15.29940 -15.20244 -14.91061 -14.58160 -14.54099 -14.31461 -14.11884 -14.00926 -13.97538 -13.69068 -13.58486 -13.33724 -12.94561 -12.77378 -12.73896 -12.62000 -12.46934 -12.23610 -12.23158 -12.07861 -11.87025 -11.83846 -11.66018 -11.56142 -11.45766 -11.17126 -10.75514 -9.77395 -9.03859 -8.98164 -8.18414 -5.52298 0.36164 0.41753 0.98694 0.99718 1.28303 1.41755 1.50000 2.39336 2.45089 2.73850 3.00577 3.22620 3.39689 3.64538 3.72649 3.78448 3.87302 3.94771 3.97549 4.03030 4.05631 4.18718 4.32399 4.36162 4.38326 4.52355 4.53012 4.63386 4.67288 4.68032 4.76949 4.79390 4.84638 4.85915 4.90637 4.94710 5.01463 5.08572 5.16202 5.19476 5.32775 5.35727 5.44927 5.47191 5.68968 5.82817 5.83640 6.10203 6.30389 6.58208 6.85442 7.56434 7.96230 9.00997 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.001970 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.475964 B =14212.030997 C =14429.628887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.204 4.204 5 C 0.098 3.902 6 O -0.317 6.317 7 C 0.072 3.928 8 C 0.461 3.539 9 O -0.523 6.523 10 O -0.344 6.344 11 C 0.104 3.896 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.619 5.619 15 C -0.252 4.252 16 H 0.055 0.945 17 C -0.031 4.031 18 N -0.953 5.953 19 Si 0.942 3.058 20 H -0.268 1.268 21 H -0.310 1.310 22 H -0.264 1.264 23 C 0.122 3.878 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.105 4.105 27 C -0.090 4.090 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.181 -8.774 -3.720 34.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.223 4.223 5 C 0.054 3.946 6 O -0.231 6.231 7 C -0.004 4.004 8 C 0.304 3.696 9 O -0.412 6.412 10 O -0.261 6.261 11 C 0.050 3.950 12 C -0.177 4.177 13 C 0.023 3.977 14 N -0.344 5.344 15 C -0.382 4.382 16 H 0.073 0.927 17 C -0.227 4.227 18 N -0.599 5.599 19 Si 0.770 3.230 20 H -0.194 1.194 21 H -0.238 1.238 22 H -0.189 1.189 23 C -0.003 4.003 24 C -0.158 4.158 25 C -0.128 4.128 26 C -0.162 4.162 27 C -0.108 4.108 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -32.736 -9.178 -3.736 34.203 hybrid contribution 1.147 -0.015 -0.528 1.263 sum -31.589 -9.194 -4.264 33.175 Atomic orbital electron populations 1.20773 0.89191 1.03599 1.02944 1.20218 0.97682 0.92782 1.01790 1.21162 0.93068 0.98849 0.97945 1.21530 0.96145 0.96949 1.07627 1.19035 0.80856 0.95041 0.99686 1.86030 1.17644 1.29975 1.89477 1.22091 0.84559 0.85802 1.07928 1.23578 0.90839 0.82918 0.72277 1.90695 1.78257 1.26764 1.45442 1.86502 1.19650 1.36531 1.83370 1.22688 0.74792 0.99797 0.97734 1.22304 0.97326 1.02640 0.95402 1.21006 0.90022 0.90756 0.95916 1.44534 1.35150 1.43124 1.11570 1.18853 0.99380 1.26547 0.93385 0.92711 1.25887 0.96661 0.98151 1.01960 1.69957 1.24471 1.26246 1.39183 0.85983 0.75573 0.80082 0.81313 1.19413 1.23837 1.18864 1.21421 0.93348 0.99179 0.86375 1.22057 0.94528 0.97912 1.01334 1.19533 0.94130 0.93660 1.05485 1.20611 0.99597 0.93562 1.02442 1.21028 0.91680 0.99153 0.98962 0.90597 0.90884 0.90672 0.83458 0.83172 0.84817 0.84958 0.90589 0.91016 0.90778 0.94741 0.91398 0.92822 0.94535 0.91720 0.88947 0.90719 0.91335 0.89917 0.92893 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 71.23 0.71 -0.07 16 2 C -0.12 -1.58 5.88 -19.85 -0.12 -1.70 16 3 C -0.09 -1.17 9.69 22.25 0.22 -0.95 16 4 C -0.20 -3.01 9.04 22.36 0.20 -2.81 16 5 C 0.10 1.94 6.66 22.51 0.15 2.09 16 6 O -0.32 -7.29 8.72 -73.34 -0.64 -7.93 16 7 C 0.07 1.26 5.33 71.23 0.38 1.64 16 8 C 0.46 12.10 8.01 71.23 0.57 12.67 16 9 O -0.52 -17.77 15.72 28.39 0.45 -17.33 16 10 O -0.34 -9.35 9.88 -51.45 -0.51 -9.86 16 11 C 0.10 3.31 2.42 30.62 0.07 3.38 16 12 C -0.14 -4.56 5.72 30.67 0.18 -4.38 16 13 C 0.15 5.80 6.52 86.36 0.56 6.36 16 14 N -0.62 -28.95 2.77 -699.09 -1.94 -30.88 16 15 C -0.25 -14.19 10.04 84.03 0.84 -13.35 16 16 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 17 C -0.03 -1.82 5.23 84.86 0.44 -1.37 16 18 N -0.95 -59.26 13.97 21.65 0.30 -58.96 16 19 Si 0.94 45.76 24.35 68.60 1.67 47.43 16 20 H -0.27 -12.05 6.62 99.48 0.66 -11.39 16 21 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 22 H -0.26 -12.42 6.63 99.48 0.66 -11.76 16 23 C 0.12 5.04 4.20 86.36 0.36 5.41 16 24 C -0.12 -3.94 5.74 30.67 0.18 -3.77 16 25 C -0.13 -2.40 5.89 -19.77 -0.12 -2.51 16 26 C -0.11 -1.89 9.79 71.24 0.70 -1.19 16 27 C -0.09 -1.31 9.35 22.25 0.21 -1.11 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.07 0.41 8.08 -2.38 -0.02 0.39 16 31 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.15 1.46 6.30 -2.91 -0.02 1.44 16 33 H 0.13 1.56 7.66 -2.38 -0.02 1.54 16 34 H 0.13 1.60 7.66 -2.39 -0.02 1.58 16 35 H 0.08 2.56 7.15 -2.39 -0.02 2.54 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 2.66 7.93 -2.39 -0.02 2.65 16 40 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 41 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 42 H 0.06 2.91 4.50 -2.39 -0.01 2.90 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 47 H 0.05 1.16 7.53 -2.38 -0.02 1.14 16 48 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -72.37 384.81 5.73 -66.64 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.85 Total: 12.56 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.54 Total: -1.67 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.63 Total: -89.84 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.70 Total: -35.12 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -72.37 5.73 -66.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120820981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.357 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds