Wall clock time and date at job start Tue Mar 31 2020 17:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38152 * 120.02634 * 2 1 4 4 C 1.38265 * 120.05231 * 179.70175 * 3 2 1 5 5 C 1.38268 * 120.11230 * 0.30246 * 4 3 2 6 6 C 1.38145 * 120.05802 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.02912 * 180.02562 * 6 5 4 8 8 C 1.38728 * 120.03228 * 180.25598 * 2 1 3 9 9 O 1.35911 * 120.05355 * 0.02562 * 8 2 1 10 10 C 1.42897 * 116.99680 * 270.27484 * 9 8 2 11 11 C 1.50692 * 109.47233 * 179.97438 * 10 9 8 12 12 O 1.20835 * 120.00090 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00096 * 180.02562 * 13 11 10 15 15 C 1.53042 * 109.45948 * 270.02720 * 14 13 11 16 16 C 1.53188 * 109.31020 * 178.60228 * 15 14 13 17 17 N 1.46920 * 108.76891 * 54.65328 * 16 15 14 18 18 C 1.36936 * 120.63173 * 126.40296 * 17 16 15 19 19 H 1.08000 * 120.00287 * 331.82991 * 18 17 16 20 20 C 1.38817 * 120.00017 * 151.83210 * 18 17 16 21 21 N 1.31618 * 119.99915 * 343.06436 * 20 18 17 22 22 Si 1.86797 * 120.00093 * 163.07076 * 20 18 17 23 23 H 1.48506 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47239 * 119.99615 * 22 20 18 25 25 H 1.48493 * 109.47131 * 239.99749 * 22 20 18 26 26 C 1.46928 * 118.73958 * 306.38274 * 17 16 15 27 27 C 1.53037 * 109.45957 * 149.97225 * 14 13 11 28 28 H 1.08998 * 109.47033 * 89.99720 * 1 2 3 29 29 H 1.09003 * 109.46985 * 209.99986 * 1 2 3 30 30 H 1.08997 * 109.47031 * 329.99910 * 1 2 3 31 31 H 1.08000 * 119.97260 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.94168 * 180.27511 * 4 3 2 33 33 H 1.08001 * 119.96916 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.46946 * 89.99880 * 7 6 5 35 35 H 1.08994 * 109.47172 * 210.00003 * 7 6 5 36 36 H 1.09004 * 109.46909 * 329.99925 * 7 6 5 37 37 H 1.09006 * 109.47291 * 299.99935 * 10 9 8 38 38 H 1.09004 * 109.47653 * 59.99751 * 10 9 8 39 39 H 1.08999 * 109.46004 * 29.99560 * 14 13 11 40 40 H 1.09000 * 109.49658 * 298.56776 * 15 14 13 41 41 H 1.08999 * 109.49697 * 58.66273 * 15 14 13 42 42 H 1.09005 * 109.59996 * 294.86185 * 16 15 14 43 43 H 1.09000 * 109.70265 * 174.50754 * 16 15 14 44 44 H 0.97002 * 119.99989 * 180.02562 * 21 20 18 45 45 H 1.08991 * 109.58804 * 293.82320 * 26 17 16 46 46 H 1.08997 * 109.70231 * 173.46274 * 26 17 16 47 47 H 1.09002 * 109.49836 * 301.33542 * 27 14 13 48 48 H 1.08998 * 109.50305 * 61.43185 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0062 5 6 4.2752 0.0010 0.0062 6 6 3.5886 -1.1977 0.0004 7 6 4.3459 -2.5006 0.0009 8 6 2.2013 -1.2010 -0.0054 9 8 1.5235 -2.3790 -0.0112 10 6 1.1942 -2.9442 1.2593 11 6 0.4496 -4.2383 1.0556 12 8 0.2235 -4.6357 -0.0629 13 8 0.0364 -4.9492 2.1167 14 6 -0.6744 -6.1860 1.8453 15 6 -2.1745 -5.9004 1.7446 16 6 -2.9174 -7.2011 1.4237 17 7 -2.5617 -8.2095 2.4313 18 6 -3.5357 -8.8700 3.1314 19 1 -4.4887 -8.3946 3.3105 20 6 -3.2981 -10.1509 3.6111 21 7 -2.2991 -10.8593 3.1289 22 14 -4.3963 -10.8690 4.9406 23 1 -5.4389 -9.8781 5.3101 24 1 -5.0449 -12.1046 4.4330 25 1 -3.5779 -11.1948 6.1360 26 6 -1.1411 -8.4961 2.6731 27 6 -0.4181 -7.1808 2.9797 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1314 -0.0004 32 1 4.1195 2.1328 0.0107 33 1 5.3552 0.0042 0.0106 34 1 4.5239 -2.8170 1.0288 35 1 3.7614 -3.2608 -0.5172 36 1 5.3002 -2.3663 -0.5084 37 1 2.1092 -3.1355 1.8201 38 1 0.5664 -2.2478 1.8152 39 1 -0.3213 -6.6088 0.9047 40 1 -2.5332 -5.5007 2.6931 41 1 -2.3541 -5.1740 0.9520 42 1 -2.6259 -7.5542 0.4345 43 1 -3.9929 -7.0252 1.4465 44 1 -2.1333 -11.7545 3.4639 45 1 -0.7047 -8.9547 1.7859 46 1 -1.0421 -9.1737 3.5210 47 1 0.6526 -7.3658 3.0663 48 1 -0.7934 -6.7690 3.9165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120840710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:19 Heat of formation + Delta-G solvation = -84.099850 kcal Electronic energy + Delta-G solvation = -28478.125788 eV Core-core repulsion = 24498.877033 eV Total energy + Delta-G solvation = -3979.248755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.81829 -40.14632 -37.90018 -37.15581 -35.79672 -33.93741 -32.75711 -31.59544 -30.48496 -29.82354 -29.08493 -27.00165 -26.97261 -25.13194 -22.69043 -22.24299 -22.02556 -21.24313 -20.73814 -19.36205 -18.30025 -17.32600 -17.06180 -17.01772 -16.38501 -15.85982 -15.70876 -14.96578 -14.71200 -14.31629 -14.20565 -13.94516 -13.59634 -13.55164 -13.44325 -13.32513 -13.13864 -13.01283 -12.86398 -12.67385 -12.47019 -12.24414 -11.89019 -11.71016 -11.56542 -11.53557 -11.26352 -11.10495 -10.78981 -10.73907 -10.47506 -10.27732 -10.24871 -10.18776 -9.91815 -9.68238 -9.48443 -8.94900 -8.88309 -8.52375 -6.75616 -5.84248 -3.26957 0.77299 0.96197 2.25776 2.32910 3.23932 3.35229 3.43224 3.45564 3.78500 4.40327 4.45634 4.45936 4.60082 4.68611 4.78919 4.81617 4.90497 5.04820 5.13597 5.22427 5.22856 5.32175 5.33533 5.37425 5.38111 5.44253 5.48169 5.50140 5.69840 5.78570 5.93085 5.96446 6.08206 6.09254 6.19703 6.21345 6.28448 6.38380 6.38702 6.47180 6.54800 6.70010 6.80729 6.92585 7.14859 7.25265 7.55180 7.75987 7.90048 8.39241 9.15198 9.77859 10.34472 11.25047 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.002082 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.438744 B =13446.007024 C =13891.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.092 4.092 7 C -0.119 4.119 8 C 0.089 3.911 9 O -0.308 6.308 10 C 0.073 3.927 11 C 0.458 3.542 12 O -0.487 6.487 13 O -0.355 6.355 14 C 0.100 3.900 15 C -0.146 4.146 16 C 0.149 3.851 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.174 3.826 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.254 0.746 45 H 0.023 0.977 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 23.744 -3.763 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.092 4.092 7 C -0.176 4.176 8 C 0.045 3.955 9 O -0.225 6.225 10 C -0.002 4.002 11 C 0.299 3.701 12 O -0.373 6.373 13 O -0.273 6.273 14 C 0.047 3.953 15 C -0.186 4.186 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.048 3.952 27 C -0.174 4.174 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.803 23.279 -4.203 26.898 hybrid contribution -0.405 -0.304 0.690 0.856 sum 12.398 22.975 -3.513 26.342 Atomic orbital electron populations 1.20748 0.90418 1.02799 1.03088 1.20277 0.96922 0.92395 0.99674 1.20947 0.94204 0.97101 1.01248 1.21178 0.94238 0.98127 0.99655 1.20954 0.99936 0.91384 1.01231 1.20270 0.92863 0.96450 0.99649 1.20783 0.99874 0.94274 1.02622 1.18324 0.89353 0.84486 1.03324 1.86073 1.74770 1.35064 1.26553 1.21887 1.00281 0.91837 0.86240 1.22842 0.77665 0.85693 0.83883 1.90698 1.52415 1.68932 1.25244 1.86517 1.67608 1.36615 1.36512 1.23021 0.91388 0.80106 1.00822 1.22475 0.93960 1.00438 1.01724 1.20863 0.97366 0.87529 0.92050 1.44133 1.02004 1.43848 1.41549 1.19234 0.96113 0.95330 1.27613 0.91446 1.25081 0.98516 0.95525 1.00547 1.70026 1.32125 1.10179 1.42404 0.86197 0.79952 0.78789 0.81679 1.20203 1.21687 1.21491 1.20818 0.82597 0.90770 1.01062 1.22480 1.00543 0.97274 0.97150 0.90524 0.91372 0.91302 0.85531 0.85680 0.85540 0.91057 0.90451 0.91158 0.88752 0.88731 0.90155 0.91285 0.92593 0.95983 0.92007 0.93545 0.95927 0.88478 0.92316 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.79 36.01 0.35 -0.62 16 2 C -0.09 -0.89 5.89 -104.47 -0.62 -1.50 16 3 C -0.12 -0.92 9.70 -39.60 -0.38 -1.30 16 4 C -0.11 -0.82 10.04 -39.56 -0.40 -1.22 16 5 C -0.12 -0.92 9.70 -39.60 -0.38 -1.30 16 6 C -0.09 -0.88 5.89 -104.48 -0.62 -1.50 16 7 C -0.12 -1.01 9.79 36.00 0.35 -0.66 16 8 C 0.09 0.97 5.67 -39.22 -0.22 0.75 16 9 O -0.31 -3.94 7.86 -39.41 -0.31 -4.25 16 10 C 0.07 0.83 6.28 36.00 0.23 1.05 16 11 C 0.46 7.05 8.01 36.00 0.29 7.33 16 12 O -0.49 -9.13 15.72 -25.48 -0.40 -9.53 16 13 O -0.36 -5.79 9.88 -39.26 -0.39 -6.18 16 14 C 0.10 1.85 2.41 -26.69 -0.06 1.78 16 15 C -0.15 -2.73 5.72 -26.61 -0.15 -2.88 16 16 C 0.15 3.19 6.52 -3.72 -0.02 3.16 16 17 N -0.59 -14.84 2.99 -172.33 -0.52 -15.35 16 18 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 19 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 22 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 27 C -0.14 -2.61 5.74 -26.61 -0.15 -2.76 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.64 6.30 -51.93 -0.33 0.31 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 36 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.88 7.23 -51.93 -0.38 0.50 16 39 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 2.53 6.07 -51.93 -0.31 2.21 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -31.77 391.53 -9.82 -41.59 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.65 Total: -0.67 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.04 Total: -2.63 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.11 Total: -40.65 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -1.10 Total: -19.96 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.77 -9.82 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120840710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.506 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds