Wall clock time and date at job start Tue Mar 31 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38152 * 120.02634 * 2 1 4 4 C 1.38265 * 120.05231 * 179.70175 * 3 2 1 5 5 C 1.38268 * 120.11230 * 0.30246 * 4 3 2 6 6 C 1.38145 * 120.05802 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.02912 * 180.02562 * 6 5 4 8 8 C 1.38728 * 120.03228 * 180.25598 * 2 1 3 9 9 O 1.35911 * 120.05355 * 0.02562 * 8 2 1 10 10 C 1.42897 * 116.99680 * 270.27484 * 9 8 2 11 11 C 1.50692 * 109.47233 * 179.97438 * 10 9 8 12 12 O 1.20835 * 120.00090 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00096 * 180.02562 * 13 11 10 15 15 C 1.53042 * 109.45948 * 270.02720 * 14 13 11 16 16 C 1.53188 * 109.31020 * 178.60228 * 15 14 13 17 17 N 1.46920 * 108.76891 * 54.65328 * 16 15 14 18 18 C 1.36936 * 120.63173 * 126.40296 * 17 16 15 19 19 H 1.08000 * 120.00287 * 331.82991 * 18 17 16 20 20 C 1.38817 * 120.00017 * 151.83210 * 18 17 16 21 21 N 1.31618 * 119.99915 * 343.06436 * 20 18 17 22 22 Si 1.86797 * 120.00093 * 163.07076 * 20 18 17 23 23 H 1.48506 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47239 * 119.99615 * 22 20 18 25 25 H 1.48493 * 109.47131 * 239.99749 * 22 20 18 26 26 C 1.46928 * 118.73958 * 306.38274 * 17 16 15 27 27 C 1.53037 * 109.45957 * 149.97225 * 14 13 11 28 28 H 1.08998 * 109.47033 * 89.99720 * 1 2 3 29 29 H 1.09003 * 109.46985 * 209.99986 * 1 2 3 30 30 H 1.08997 * 109.47031 * 329.99910 * 1 2 3 31 31 H 1.08000 * 119.97260 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.94168 * 180.27511 * 4 3 2 33 33 H 1.08001 * 119.96916 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.46946 * 89.99880 * 7 6 5 35 35 H 1.08994 * 109.47172 * 210.00003 * 7 6 5 36 36 H 1.09004 * 109.46909 * 329.99925 * 7 6 5 37 37 H 1.09006 * 109.47291 * 299.99935 * 10 9 8 38 38 H 1.09004 * 109.47653 * 59.99751 * 10 9 8 39 39 H 1.08999 * 109.46004 * 29.99560 * 14 13 11 40 40 H 1.09000 * 109.49658 * 298.56776 * 15 14 13 41 41 H 1.08999 * 109.49697 * 58.66273 * 15 14 13 42 42 H 1.09005 * 109.59996 * 294.86185 * 16 15 14 43 43 H 1.09000 * 109.70265 * 174.50754 * 16 15 14 44 44 H 0.97002 * 119.99989 * 180.02562 * 21 20 18 45 45 H 1.08991 * 109.58804 * 293.82320 * 26 17 16 46 46 H 1.08997 * 109.70231 * 173.46274 * 26 17 16 47 47 H 1.09002 * 109.49836 * 301.33542 * 27 14 13 48 48 H 1.08998 * 109.50305 * 61.43185 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0062 5 6 4.2752 0.0010 0.0062 6 6 3.5886 -1.1977 0.0004 7 6 4.3459 -2.5006 0.0009 8 6 2.2013 -1.2010 -0.0054 9 8 1.5235 -2.3790 -0.0112 10 6 1.1942 -2.9442 1.2593 11 6 0.4496 -4.2383 1.0556 12 8 0.2235 -4.6357 -0.0629 13 8 0.0364 -4.9492 2.1167 14 6 -0.6744 -6.1860 1.8453 15 6 -2.1745 -5.9004 1.7446 16 6 -2.9174 -7.2011 1.4237 17 7 -2.5617 -8.2095 2.4313 18 6 -3.5357 -8.8700 3.1314 19 1 -4.4887 -8.3946 3.3105 20 6 -3.2981 -10.1509 3.6111 21 7 -2.2991 -10.8593 3.1289 22 14 -4.3963 -10.8690 4.9406 23 1 -5.4389 -9.8781 5.3101 24 1 -5.0449 -12.1046 4.4330 25 1 -3.5779 -11.1948 6.1360 26 6 -1.1411 -8.4961 2.6731 27 6 -0.4181 -7.1808 2.9797 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1314 -0.0004 32 1 4.1195 2.1328 0.0107 33 1 5.3552 0.0042 0.0106 34 1 4.5239 -2.8170 1.0288 35 1 3.7614 -3.2608 -0.5172 36 1 5.3002 -2.3663 -0.5084 37 1 2.1092 -3.1355 1.8201 38 1 0.5664 -2.2478 1.8152 39 1 -0.3213 -6.6088 0.9047 40 1 -2.5332 -5.5007 2.6931 41 1 -2.3541 -5.1740 0.9520 42 1 -2.6259 -7.5542 0.4345 43 1 -3.9929 -7.0252 1.4465 44 1 -2.1333 -11.7545 3.4639 45 1 -0.7047 -8.9547 1.7859 46 1 -1.0421 -9.1737 3.5210 47 1 0.6526 -7.3658 3.0663 48 1 -0.7934 -6.7690 3.9165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120840710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:17 Heat of formation + Delta-G solvation = -99.273873 kcal Electronic energy + Delta-G solvation = -28478.783783 eV Core-core repulsion = 24498.877033 eV Total energy + Delta-G solvation = -3979.906750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.88845 -41.12222 -39.22737 -38.27171 -37.27175 -34.63525 -34.55722 -32.37387 -32.12040 -31.53607 -30.15258 -27.79267 -27.56413 -26.97142 -24.28199 -23.88846 -22.84795 -22.06907 -21.86923 -21.07378 -19.24501 -18.93908 -18.31420 -17.95518 -17.71575 -17.00157 -16.80165 -16.34417 -15.92863 -15.45838 -15.44028 -15.10617 -14.95449 -14.93391 -14.57215 -14.31090 -14.23299 -14.06410 -13.89756 -13.83383 -13.60981 -13.30697 -13.09486 -12.88330 -12.74321 -12.65157 -12.49603 -12.48162 -12.34742 -12.20886 -12.14760 -11.96917 -11.88282 -11.58528 -11.39609 -11.11704 -11.02578 -10.58550 -9.55422 -9.53778 -8.77814 -7.91716 -5.37927 0.10856 0.35512 1.02814 1.22502 1.47516 1.49294 1.60125 2.49839 2.52548 2.95532 3.24929 3.44983 3.59673 3.75576 3.78214 3.80341 3.85755 3.98386 4.00227 4.08758 4.11966 4.33624 4.38223 4.44248 4.50188 4.53912 4.59714 4.71061 4.71376 4.74328 4.78400 4.83771 4.85093 4.91606 4.92760 5.01667 5.15813 5.18873 5.29871 5.35857 5.42666 5.49862 5.50238 5.58862 5.61187 5.66303 5.79250 6.34969 6.39932 6.63384 7.09677 7.77719 8.30976 9.16298 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.002082 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.438744 B =13446.007024 C =13891.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.106 4.106 7 C -0.117 4.117 8 C 0.061 3.939 9 O -0.330 6.330 10 C 0.079 3.921 11 C 0.460 3.540 12 O -0.525 6.525 13 O -0.347 6.347 14 C 0.106 3.894 15 C -0.133 4.133 16 C 0.146 3.854 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.070 0.930 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.287 1.287 26 C 0.179 3.821 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.012 0.988 43 H 0.067 0.933 44 H 0.252 0.748 45 H 0.000 1.000 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 26.694 -2.763 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.173 4.173 8 C 0.018 3.982 9 O -0.248 6.248 10 C 0.005 3.995 11 C 0.303 3.697 12 O -0.413 6.413 13 O -0.264 6.264 14 C 0.052 3.948 15 C -0.172 4.172 16 C 0.020 3.980 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.088 0.912 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.799 3.201 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.214 1.214 26 C 0.053 3.947 27 C -0.160 4.160 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.030 0.970 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.620 26.271 -3.204 29.764 hybrid contribution -0.601 -1.124 0.285 1.306 sum 13.018 25.147 -2.919 28.467 Atomic orbital electron populations 1.20755 0.90176 1.03206 1.02846 1.20471 0.97382 0.92681 1.00172 1.21264 0.94792 0.97290 1.00369 1.21567 0.94183 0.99105 0.97987 1.21266 1.01144 0.90943 1.00372 1.20466 0.92588 0.97482 1.00154 1.20770 1.00064 0.93403 1.03093 1.18593 0.90026 0.84160 1.05388 1.86039 1.75349 1.36198 1.27192 1.21984 1.01112 0.89894 0.86537 1.23678 0.76770 0.86324 0.82928 1.90688 1.53999 1.69988 1.26610 1.86507 1.67406 1.35663 1.36834 1.22687 0.91513 0.81019 0.99566 1.22281 0.93651 0.98888 1.02407 1.20955 0.98210 0.87994 0.90820 1.44391 1.02189 1.44385 1.42415 1.19558 0.96649 0.95610 1.27611 0.91194 1.25861 1.00107 0.95979 1.02607 1.70176 1.33890 1.10348 1.43731 0.85157 0.78357 0.77806 0.78795 1.18986 1.22039 1.21400 1.20601 0.82649 0.92520 0.98881 1.22191 1.01156 0.95220 0.97407 0.91115 0.92574 0.89240 0.83322 0.82840 0.83350 0.90113 0.92835 0.89611 0.86356 0.86339 0.91757 0.90668 0.91287 0.96960 0.91418 0.93884 0.98202 0.91159 0.90263 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.79 71.24 0.70 -1.11 16 2 C -0.11 -1.89 5.89 -19.77 -0.12 -2.00 16 3 C -0.12 -1.55 9.70 22.26 0.22 -1.33 16 4 C -0.11 -1.23 10.04 22.28 0.22 -1.01 16 5 C -0.12 -1.56 9.70 22.25 0.22 -1.34 16 6 C -0.11 -1.89 5.89 -19.77 -0.12 -2.00 16 7 C -0.12 -1.87 9.79 71.23 0.70 -1.17 16 8 C 0.06 1.29 5.67 22.50 0.13 1.41 16 9 O -0.33 -8.35 7.86 -73.47 -0.58 -8.92 16 10 C 0.08 1.70 6.28 71.23 0.45 2.15 16 11 C 0.46 13.82 8.01 71.23 0.57 14.39 16 12 O -0.52 -19.87 15.72 28.37 0.45 -19.42 16 13 O -0.35 -10.87 9.88 -51.44 -0.51 -11.37 16 14 C 0.11 3.88 2.41 30.62 0.07 3.95 16 15 C -0.13 -4.85 5.72 30.67 0.18 -4.68 16 16 C 0.15 6.31 6.52 86.36 0.56 6.87 16 17 N -0.61 -31.03 2.99 -699.11 -2.09 -33.12 16 18 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 19 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 20 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 21 N -0.94 -55.06 11.19 21.65 0.24 -54.81 16 22 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 26 C 0.18 8.70 5.30 86.36 0.46 9.16 16 27 C -0.12 -4.61 5.74 30.67 0.18 -4.43 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.01 6.30 -2.39 -0.02 0.99 16 30 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 31 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.10 7.53 -2.39 -0.02 1.09 16 36 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.12 1.97 7.23 -2.38 -0.02 1.96 16 39 H 0.06 2.58 7.16 -2.39 -0.02 2.56 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 47 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -69.96 391.53 6.11 -63.85 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.94 Total: 14.55 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.63 Total: 2.80 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.85 Total: -87.93 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.64 Total: -39.72 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.96 6.11 -63.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120840710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.427 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds