Wall clock time and date at job start Tue Mar 31 2020 17:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.94377 * 2 1 4 4 C 1.38149 * 120.05533 * 179.72639 * 3 2 1 5 5 C 1.38730 * 119.94249 * 0.27772 * 4 3 2 6 6 O 1.35902 * 120.05585 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99657 * 354.85010 * 6 5 4 8 8 H 1.08991 * 109.47210 * 325.61119 * 7 6 5 9 9 C 1.52999 * 109.47215 * 85.60981 * 7 6 5 10 10 C 1.50700 * 109.47212 * 205.60773 * 7 6 5 11 11 O 1.20831 * 119.99798 * 0.02562 * 10 7 6 12 12 O 1.34227 * 120.00103 * 179.97438 * 10 7 6 13 13 C 1.45204 * 116.99822 * 179.97438 * 12 10 7 14 14 C 1.53033 * 109.46251 * 270.07119 * 13 12 10 15 15 C 1.53190 * 109.31474 * 178.61376 * 14 13 12 16 16 N 1.46929 * 108.77336 * 54.63217 * 15 14 13 17 17 C 1.36943 * 120.63033 * 126.41096 * 16 15 14 18 18 H 1.08002 * 120.00117 * 333.13016 * 17 16 15 19 19 C 1.38816 * 119.99854 * 153.12285 * 17 16 15 20 20 N 1.31621 * 119.99961 * 343.82481 * 19 17 16 21 21 Si 1.86797 * 119.99548 * 163.82841 * 19 17 16 22 22 H 1.48498 * 109.47398 * 90.00222 * 21 19 17 23 23 H 1.48510 * 109.46756 * 210.00011 * 21 19 17 24 24 H 1.48498 * 109.47301 * 329.99555 * 21 19 17 25 25 C 1.46922 * 118.74141 * 306.39432 * 16 15 14 26 26 C 1.53035 * 109.45828 * 149.99909 * 13 12 10 27 27 C 1.38731 * 119.89047 * 359.97438 * 5 4 3 28 28 C 1.38146 * 119.94417 * 0.02562 * 27 5 4 29 29 H 1.08996 * 109.46961 * 89.99831 * 1 2 3 30 30 H 1.09003 * 109.46799 * 209.99879 * 1 2 3 31 31 H 1.08997 * 109.47075 * 330.00219 * 1 2 3 32 32 H 1.07997 * 119.97406 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.02587 * 180.30166 * 4 3 2 34 34 H 1.09003 * 109.47324 * 59.99998 * 9 7 6 35 35 H 1.08997 * 109.47441 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.47405 * 299.99822 * 9 7 6 37 37 H 1.09002 * 109.45719 * 30.03197 * 13 12 10 38 38 H 1.08996 * 109.49907 * 298.56543 * 14 13 12 39 39 H 1.09001 * 109.50080 * 58.66427 * 14 13 12 40 40 H 1.08997 * 109.59080 * 294.85196 * 15 14 13 41 41 H 1.08995 * 109.70781 * 174.49017 * 15 14 13 42 42 H 0.96994 * 119.99397 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58504 * 293.82222 * 25 16 15 44 44 H 1.08999 * 109.70622 * 173.46313 * 25 16 15 45 45 H 1.09005 * 109.50110 * 301.33912 * 26 13 12 46 46 H 1.09007 * 109.49863 * 61.43522 * 26 13 12 47 47 H 1.08005 * 120.02762 * 180.02562 * 27 5 4 48 48 H 1.07996 * 119.96873 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2734 0.0000 0.0056 6 8 5.6324 0.0000 0.0107 7 6 6.2816 1.2684 -0.0983 8 1 5.6933 1.9235 -0.7407 9 6 6.4095 1.8969 1.2907 10 6 7.6535 1.0811 -0.6932 11 8 8.0359 -0.0250 -0.9935 12 8 8.4502 2.1432 -0.8904 13 6 9.7583 1.8880 -1.4667 14 6 10.7676 1.6296 -0.3459 15 6 12.1386 1.3266 -0.9585 16 7 12.5069 2.4265 -1.8605 17 6 13.7048 3.0746 -1.7177 18 1 14.1852 3.1148 -0.7512 19 6 14.3017 3.6797 -2.8152 20 7 13.9045 3.3738 -4.0322 21 14 15.6685 4.9280 -2.5647 22 1 16.9794 4.2304 -2.5495 23 1 15.6462 5.9156 -3.6736 24 1 15.4666 5.6306 -1.2721 25 6 11.5658 2.8175 -2.9188 26 6 10.2012 3.1036 -2.2841 27 6 3.5786 -1.2007 0.0003 28 6 2.1972 -1.1981 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6558 2.1326 0.0004 33 1 4.1172 2.1369 0.0106 34 1 6.9978 1.2417 1.9332 35 1 6.9050 2.8642 1.2077 36 1 5.4172 2.0324 1.7211 37 1 9.7049 1.0139 -2.1157 38 1 10.8401 2.5124 0.2892 39 1 10.4394 0.7780 0.2502 40 1 12.0898 0.3941 -1.5206 41 1 12.8832 1.2379 -0.1675 42 1 14.3214 3.7970 -4.7990 43 1 11.4701 2.0064 -3.6407 44 1 11.9299 3.7133 -3.4218 45 1 9.4698 3.3013 -3.0678 46 1 10.2789 3.9727 -1.6308 47 1 4.1173 -2.1369 0.0007 48 1 1.6559 -2.1326 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120858717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:26 Heat of formation + Delta-G solvation = -80.658567 kcal Electronic energy + Delta-G solvation = -28311.212727 eV Core-core repulsion = 24332.113197 eV Total energy + Delta-G solvation = -3979.099530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.01643 -40.08969 -38.23188 -37.30785 -35.85034 -33.13833 -32.60798 -31.81775 -31.11110 -30.35954 -29.63042 -26.84818 -25.67370 -24.68747 -23.42606 -22.45817 -22.17078 -21.52602 -20.38606 -19.36941 -18.73417 -17.52166 -17.10380 -16.61877 -16.18284 -15.73868 -15.43515 -15.21223 -14.86347 -14.70823 -14.18022 -14.01673 -13.83586 -13.62810 -13.59732 -13.26905 -13.07697 -13.04899 -12.72934 -12.57763 -12.44464 -12.34434 -11.96318 -11.84537 -11.58085 -11.30872 -11.20615 -11.09800 -11.07658 -10.79181 -10.73754 -10.46379 -10.24432 -10.20634 -9.90642 -9.70430 -9.49667 -9.32692 -8.52390 -8.36641 -6.77388 -5.84075 -3.26397 1.00777 1.08225 2.10139 2.22067 3.31500 3.35851 3.41786 3.42395 3.44695 4.31861 4.45413 4.45607 4.51150 4.53716 4.62540 4.66470 4.90675 5.01296 5.13139 5.21035 5.26014 5.27783 5.33714 5.36287 5.37238 5.39471 5.48948 5.57835 5.68459 5.71848 5.76759 5.95179 5.97163 6.02684 6.18685 6.26886 6.28175 6.37774 6.43473 6.46754 6.54314 6.68738 6.78046 6.91009 7.05583 7.26157 7.57325 7.74301 7.84708 8.38514 9.14967 9.77684 10.33342 11.24952 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036411 B = 0.001955 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.813805 B =14316.591019 C =14439.705610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.208 4.208 5 C 0.127 3.873 6 O -0.288 6.288 7 C 0.094 3.906 8 H 0.110 0.890 9 C -0.173 4.173 10 C 0.461 3.539 11 O -0.486 6.486 12 O -0.351 6.351 13 C 0.099 3.901 14 C -0.146 4.146 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.001 3.999 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.080 4.080 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.062 0.938 42 H 0.255 0.745 43 H 0.022 0.978 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.133 0.867 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.710 -3.696 9.092 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.226 4.226 5 C 0.082 3.918 6 O -0.202 6.202 7 C 0.036 3.964 8 H 0.127 0.873 9 C -0.231 4.231 10 C 0.301 3.699 11 O -0.372 6.372 12 O -0.268 6.268 13 C 0.046 3.954 14 C -0.186 4.186 15 C 0.022 3.978 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.174 4.174 27 C -0.162 4.162 28 C -0.099 4.099 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.151 0.849 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.311 -4.118 8.840 27.124 hybrid contribution 0.741 0.694 -0.032 1.016 sum -24.569 -3.424 8.808 26.324 Atomic orbital electron populations 1.20720 0.91049 1.02630 1.02196 1.19859 0.96271 0.93072 1.03548 1.20830 0.93154 0.97781 0.97970 1.21327 0.95506 0.97177 1.08604 1.19036 0.81757 0.94436 0.96548 1.86169 1.16473 1.29854 1.87698 1.21672 0.90005 0.85380 0.99337 0.87300 1.22313 1.04175 1.02428 0.94153 1.22836 0.86824 0.83781 0.76426 1.90694 1.74409 1.26009 1.46133 1.86518 1.29142 1.36672 1.74510 1.23051 0.76482 1.00664 0.95247 1.22472 0.97261 1.01335 0.97505 1.20862 0.92217 0.91031 0.93718 1.44134 1.17187 1.35467 1.34736 1.19205 0.97171 1.28302 0.93519 0.91445 1.25050 0.98336 1.01239 0.95116 1.69998 1.44268 1.43594 0.97087 0.86257 0.81815 0.81206 0.77259 1.21354 1.21511 1.20457 1.20875 0.83949 1.01190 0.89421 1.22489 1.00335 0.96075 0.98531 1.20473 0.93745 0.96460 1.05552 1.20858 0.92844 0.97871 0.98279 0.91395 0.91667 0.91701 0.85690 0.85029 0.90624 0.89050 0.90466 0.90197 0.91240 0.92604 0.95997 0.91997 0.93492 0.96018 0.88028 0.92331 0.91358 0.84917 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.13 -0.99 5.88 -104.60 -0.62 -1.61 16 3 C -0.08 -0.63 9.69 -39.60 -0.38 -1.02 16 4 C -0.21 -1.90 8.28 -39.43 -0.33 -2.23 16 5 C 0.13 1.42 6.61 -39.22 -0.26 1.16 16 6 O -0.29 -3.81 9.33 -39.38 -0.37 -4.18 16 7 C 0.09 1.10 2.74 -27.88 -0.08 1.02 16 8 H 0.11 1.03 6.25 -51.93 -0.32 0.71 16 9 C -0.17 -1.60 9.12 37.16 0.34 -1.26 16 10 C 0.46 7.22 7.30 36.01 0.26 7.48 16 11 O -0.49 -9.29 15.72 -25.48 -0.40 -9.69 16 12 O -0.35 -5.69 9.78 -39.25 -0.38 -6.07 16 13 C 0.10 1.83 2.41 -26.70 -0.06 1.76 16 14 C -0.15 -2.71 5.72 -26.62 -0.15 -2.87 16 15 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 16 N -0.59 -14.79 3.00 -172.32 -0.52 -15.31 16 17 C -0.25 -6.85 9.60 -15.05 -0.14 -6.99 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.02 4.95 -17.43 -0.09 -0.06 16 20 N -0.90 -25.87 11.05 55.49 0.61 -25.26 16 21 Si 0.91 21.39 29.58 -169.99 -5.03 16.36 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 26 C -0.13 -2.60 5.74 -26.61 -0.15 -2.75 16 27 C -0.14 -1.45 9.99 -39.43 -0.39 -1.85 16 28 C -0.08 -0.66 9.69 -39.61 -0.38 -1.05 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.99 5.47 -52.49 -0.29 0.70 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.08 0.58 7.01 -51.93 -0.36 0.21 16 37 H 0.08 1.59 7.15 -51.93 -0.37 1.21 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 2.65 5.93 -51.93 -0.31 2.34 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -31.62 388.88 -9.87 -41.49 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.53 Total: 0.08 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.12 Total: -3.28 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.10 Total: -40.57 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.15 Total: -19.94 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.62 -9.87 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120858717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.169 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds