Wall clock time and date at job start Tue Mar 31 2020 17:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.94377 * 2 1 4 4 C 1.38149 * 120.05533 * 179.72639 * 3 2 1 5 5 C 1.38730 * 119.94249 * 0.27772 * 4 3 2 6 6 O 1.35902 * 120.05585 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99657 * 354.85010 * 6 5 4 8 8 H 1.08991 * 109.47210 * 325.61119 * 7 6 5 9 9 C 1.52999 * 109.47215 * 85.60981 * 7 6 5 10 10 C 1.50700 * 109.47212 * 205.60773 * 7 6 5 11 11 O 1.20831 * 119.99798 * 0.02562 * 10 7 6 12 12 O 1.34227 * 120.00103 * 179.97438 * 10 7 6 13 13 C 1.45204 * 116.99822 * 179.97438 * 12 10 7 14 14 C 1.53033 * 109.46251 * 270.07119 * 13 12 10 15 15 C 1.53190 * 109.31474 * 178.61376 * 14 13 12 16 16 N 1.46929 * 108.77336 * 54.63217 * 15 14 13 17 17 C 1.36943 * 120.63033 * 126.41096 * 16 15 14 18 18 H 1.08002 * 120.00117 * 333.13016 * 17 16 15 19 19 C 1.38816 * 119.99854 * 153.12285 * 17 16 15 20 20 N 1.31621 * 119.99961 * 343.82481 * 19 17 16 21 21 Si 1.86797 * 119.99548 * 163.82841 * 19 17 16 22 22 H 1.48498 * 109.47398 * 90.00222 * 21 19 17 23 23 H 1.48510 * 109.46756 * 210.00011 * 21 19 17 24 24 H 1.48498 * 109.47301 * 329.99555 * 21 19 17 25 25 C 1.46922 * 118.74141 * 306.39432 * 16 15 14 26 26 C 1.53035 * 109.45828 * 149.99909 * 13 12 10 27 27 C 1.38731 * 119.89047 * 359.97438 * 5 4 3 28 28 C 1.38146 * 119.94417 * 0.02562 * 27 5 4 29 29 H 1.08996 * 109.46961 * 89.99831 * 1 2 3 30 30 H 1.09003 * 109.46799 * 209.99879 * 1 2 3 31 31 H 1.08997 * 109.47075 * 330.00219 * 1 2 3 32 32 H 1.07997 * 119.97406 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.02587 * 180.30166 * 4 3 2 34 34 H 1.09003 * 109.47324 * 59.99998 * 9 7 6 35 35 H 1.08997 * 109.47441 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.47405 * 299.99822 * 9 7 6 37 37 H 1.09002 * 109.45719 * 30.03197 * 13 12 10 38 38 H 1.08996 * 109.49907 * 298.56543 * 14 13 12 39 39 H 1.09001 * 109.50080 * 58.66427 * 14 13 12 40 40 H 1.08997 * 109.59080 * 294.85196 * 15 14 13 41 41 H 1.08995 * 109.70781 * 174.49017 * 15 14 13 42 42 H 0.96994 * 119.99397 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58504 * 293.82222 * 25 16 15 44 44 H 1.08999 * 109.70622 * 173.46313 * 25 16 15 45 45 H 1.09005 * 109.50110 * 301.33912 * 26 13 12 46 46 H 1.09007 * 109.49863 * 61.43522 * 26 13 12 47 47 H 1.08005 * 120.02762 * 180.02562 * 27 5 4 48 48 H 1.07996 * 119.96873 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2734 0.0000 0.0056 6 8 5.6324 0.0000 0.0107 7 6 6.2816 1.2684 -0.0983 8 1 5.6933 1.9235 -0.7407 9 6 6.4095 1.8969 1.2907 10 6 7.6535 1.0811 -0.6932 11 8 8.0359 -0.0250 -0.9935 12 8 8.4502 2.1432 -0.8904 13 6 9.7583 1.8880 -1.4667 14 6 10.7676 1.6296 -0.3459 15 6 12.1386 1.3266 -0.9585 16 7 12.5069 2.4265 -1.8605 17 6 13.7048 3.0746 -1.7177 18 1 14.1852 3.1148 -0.7512 19 6 14.3017 3.6797 -2.8152 20 7 13.9045 3.3738 -4.0322 21 14 15.6685 4.9280 -2.5647 22 1 16.9794 4.2304 -2.5495 23 1 15.6462 5.9156 -3.6736 24 1 15.4666 5.6306 -1.2721 25 6 11.5658 2.8175 -2.9188 26 6 10.2012 3.1036 -2.2841 27 6 3.5786 -1.2007 0.0003 28 6 2.1972 -1.1981 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6558 2.1326 0.0004 33 1 4.1172 2.1369 0.0106 34 1 6.9978 1.2417 1.9332 35 1 6.9050 2.8642 1.2077 36 1 5.4172 2.0324 1.7211 37 1 9.7049 1.0139 -2.1157 38 1 10.8401 2.5124 0.2892 39 1 10.4394 0.7780 0.2502 40 1 12.0898 0.3941 -1.5206 41 1 12.8832 1.2379 -0.1675 42 1 14.3214 3.7970 -4.7990 43 1 11.4701 2.0064 -3.6407 44 1 11.9299 3.7133 -3.4218 45 1 9.4698 3.3013 -3.0678 46 1 10.2789 3.9727 -1.6308 47 1 4.1173 -2.1369 0.0007 48 1 1.6559 -2.1326 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120858717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:25 Heat of formation + Delta-G solvation = -95.852892 kcal Electronic energy + Delta-G solvation = -28311.871603 eV Core-core repulsion = 24332.113197 eV Total energy + Delta-G solvation = -3979.758405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.10335 -41.09886 -39.31918 -38.62173 -37.34896 -34.69867 -33.69257 -32.53830 -32.13685 -31.75081 -31.40405 -27.48955 -27.27373 -25.88974 -24.38638 -23.97068 -23.62594 -22.46136 -21.47439 -21.07028 -19.58671 -18.96545 -18.58673 -17.96011 -17.33540 -16.88177 -16.46665 -16.25385 -16.21866 -15.72896 -15.42870 -15.35377 -14.99342 -14.74369 -14.68726 -14.47761 -14.38028 -14.26166 -14.04729 -13.51108 -13.33276 -13.26838 -13.06515 -12.93483 -12.74650 -12.70372 -12.60544 -12.50660 -12.41329 -12.17074 -12.00704 -11.96357 -11.87208 -11.75886 -11.53225 -11.34748 -11.11861 -10.57043 -9.97143 -9.05824 -8.78672 -7.90722 -5.36465 0.36557 0.40470 0.94475 1.04591 1.48466 1.49718 1.59741 2.35592 2.50344 2.76757 3.23204 3.31523 3.55604 3.60437 3.71241 3.74588 3.81345 3.87125 3.95027 4.09423 4.10664 4.31240 4.33364 4.45355 4.52424 4.53483 4.57410 4.70545 4.71985 4.78086 4.83391 4.83751 4.91200 4.92005 5.01164 5.08415 5.10467 5.17985 5.18193 5.34229 5.35612 5.38375 5.42667 5.60789 5.67476 5.68798 5.82105 6.30265 6.35021 6.56511 7.10082 7.78369 8.30688 9.16864 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036411 B = 0.001955 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.813805 B =14316.591019 C =14439.705610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.084 4.084 4 C -0.209 4.209 5 C 0.099 3.901 6 O -0.316 6.316 7 C 0.099 3.901 8 H 0.135 0.865 9 C -0.167 4.167 10 C 0.459 3.541 11 O -0.526 6.526 12 O -0.340 6.340 13 C 0.105 3.895 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.610 5.610 17 C -0.264 4.264 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.177 3.823 26 C -0.120 4.120 27 C -0.163 4.163 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.012 0.988 41 H 0.068 0.932 42 H 0.252 0.748 43 H -0.002 1.002 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.126 0.874 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.089 -2.311 10.615 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.227 4.227 5 C 0.055 3.945 6 O -0.231 6.231 7 C 0.042 3.958 8 H 0.152 0.848 9 C -0.224 4.224 10 C 0.302 3.698 11 O -0.414 6.414 12 O -0.257 6.257 13 C 0.051 3.949 14 C -0.172 4.172 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.193 1.193 25 C 0.051 3.949 26 C -0.159 4.159 27 C -0.182 4.182 28 C -0.103 4.103 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.144 0.856 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.722 -2.736 10.395 29.733 hybrid contribution 1.366 0.155 -0.504 1.464 sum -26.356 -2.580 9.891 28.269 Atomic orbital electron populations 1.20777 0.89093 1.03704 1.02931 1.20255 0.97776 0.92814 1.02052 1.21194 0.92879 0.98979 0.97106 1.21535 0.96154 0.96979 1.08067 1.19281 0.80990 0.95625 0.98580 1.86119 1.17854 1.30707 1.88371 1.21828 0.87496 0.85618 1.00889 0.84764 1.22327 1.05486 1.02303 0.92298 1.23767 0.87895 0.82864 0.75248 1.90683 1.75396 1.27451 1.47916 1.86508 1.28096 1.36830 1.74236 1.22719 0.77792 0.99427 0.94986 1.22276 0.95440 1.02091 0.97377 1.20956 0.94120 0.89686 0.93260 1.44385 1.17118 1.36487 1.35319 1.19550 0.97890 1.28278 0.93706 0.91100 1.25828 1.00859 1.03069 0.94838 1.70158 1.45683 1.44707 0.97719 0.85217 0.78840 0.78703 0.77298 1.21296 1.21751 1.19341 1.20658 0.86044 0.99016 0.89169 1.22196 0.98178 0.96429 0.99117 1.20655 0.94760 0.96270 1.06502 1.21133 0.92154 0.99238 0.97740 0.90706 0.90784 0.90540 0.83214 0.83402 0.91689 0.87864 0.88288 0.91939 0.90485 0.91421 0.97035 0.91375 0.93897 0.98376 0.90664 0.90304 0.90840 0.85561 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 71.24 0.71 -0.11 16 2 C -0.13 -1.70 5.88 -19.85 -0.12 -1.82 16 3 C -0.08 -1.11 9.69 22.26 0.22 -0.89 16 4 C -0.21 -3.36 8.28 22.37 0.19 -3.18 16 5 C 0.10 2.14 6.61 22.51 0.15 2.29 16 6 O -0.32 -8.25 9.33 -73.37 -0.68 -8.93 16 7 C 0.10 2.17 2.74 29.85 0.08 2.25 16 8 H 0.14 2.22 6.25 -2.39 -0.01 2.20 16 9 C -0.17 -2.70 9.12 71.98 0.66 -2.05 16 10 C 0.46 14.05 7.30 71.24 0.52 14.57 16 11 O -0.53 -20.33 15.72 28.38 0.45 -19.89 16 12 O -0.34 -10.51 9.78 -51.39 -0.50 -11.02 16 13 C 0.10 3.82 2.41 30.62 0.07 3.89 16 14 C -0.13 -4.82 5.72 30.67 0.18 -4.64 16 15 C 0.15 6.27 6.52 86.36 0.56 6.83 16 16 N -0.61 -30.84 3.00 -699.11 -2.10 -32.94 16 17 C -0.26 -14.43 9.60 84.03 0.81 -13.62 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 19 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 20 N -0.94 -54.84 11.05 21.65 0.24 -54.60 16 21 Si 0.97 44.24 29.58 68.60 2.03 46.27 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.18 8.56 5.31 86.36 0.46 9.02 16 26 C -0.12 -4.56 5.74 30.67 0.18 -4.38 16 27 C -0.16 -3.28 9.99 22.37 0.22 -3.05 16 28 C -0.08 -1.28 9.69 22.25 0.22 -1.07 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 32 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.15 1.75 5.47 -2.91 -0.02 1.74 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.10 1.19 7.01 -2.39 -0.02 1.17 16 37 H 0.06 2.52 7.15 -2.39 -0.02 2.50 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.08 4.04 5.93 -2.39 -0.01 4.03 16 45 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16 46 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 47 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 48 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -69.68 388.88 5.89 -63.79 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.95 Total: 15.65 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.52 Total: 1.66 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.86 Total: -87.54 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.74 Total: -39.83 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.68 5.89 -63.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120858717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.067 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds