Wall clock time and date at job start Tue Mar 31 2020 17:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.94653 * 2 1 4 4 C 1.38146 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.94892 * 359.97438 * 4 3 2 6 6 O 1.35907 * 120.05892 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00087 * 184.18597 * 6 5 4 8 8 H 1.09004 * 109.47295 * 36.59652 * 7 6 5 9 9 C 1.52994 * 109.47039 * 276.59712 * 7 6 5 10 10 C 1.50697 * 109.47236 * 156.59540 * 7 6 5 11 11 O 1.20833 * 119.99716 * 5.00220 * 10 7 6 12 12 O 1.34230 * 120.00314 * 185.00010 * 10 7 6 13 13 C 1.45200 * 117.00044 * 180.02562 * 12 10 7 14 14 C 1.53038 * 109.45898 * 210.00062 * 13 12 10 15 15 C 1.53189 * 109.31285 * 178.61473 * 14 13 12 16 16 N 1.46921 * 108.89350 * 54.56202 * 15 14 13 17 17 C 1.36943 * 120.62933 * 126.46107 * 16 15 14 18 18 H 1.07996 * 120.00567 * 328.04930 * 17 16 15 19 19 C 1.38812 * 119.99664 * 148.04571 * 17 16 15 20 20 N 1.31621 * 120.00194 * 343.54689 * 19 17 16 21 21 Si 1.86802 * 120.00039 * 163.55018 * 19 17 16 22 22 H 1.48503 * 109.46918 * 59.99639 * 21 19 17 23 23 H 1.48495 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46688 * 300.00140 * 21 19 17 25 25 C 1.46955 * 118.71709 * 306.63804 * 16 15 14 26 26 C 1.53031 * 109.46253 * 89.92887 * 13 12 10 27 27 C 1.38731 * 119.89010 * 0.27297 * 5 4 3 28 28 C 1.38155 * 119.93927 * 359.43432 * 27 5 4 29 29 H 1.08994 * 109.47368 * 89.99974 * 1 2 3 30 30 H 1.08999 * 109.47339 * 209.99945 * 1 2 3 31 31 H 1.08998 * 109.46614 * 329.99651 * 1 2 3 32 32 H 1.07993 * 119.97180 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.02385 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.47439 * 299.99863 * 9 7 6 35 35 H 1.09005 * 109.47415 * 60.00664 * 9 7 6 36 36 H 1.09000 * 109.47316 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.44829 * 329.96194 * 13 12 10 38 38 H 1.09000 * 109.50214 * 58.65404 * 14 13 12 39 39 H 1.09006 * 109.49645 * 298.56387 * 14 13 12 40 40 H 1.09010 * 109.58366 * 174.42234 * 15 14 13 41 41 H 1.08997 * 109.58931 * 294.69774 * 15 14 13 42 42 H 0.96999 * 120.00289 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.46948 * 293.57656 * 25 16 15 44 44 H 1.09003 * 109.71525 * 173.28812 * 25 16 15 45 45 H 1.08999 * 109.50444 * 301.33784 * 26 13 12 46 46 H 1.09003 * 109.50097 * 61.43358 * 26 13 12 47 47 H 1.07994 * 120.03371 * 179.72327 * 27 5 4 48 48 H 1.08001 * 119.97175 * 180.27211 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2006 -0.0005 5 6 4.2734 -0.0002 -0.0005 6 8 5.6325 -0.0003 -0.0005 7 6 6.2812 -1.2701 -0.0935 8 1 5.7109 -1.9218 -0.7555 9 6 6.3650 -1.9029 1.2969 10 6 7.6710 -1.0850 -0.6458 11 8 8.0985 0.0273 -0.8457 12 8 8.4341 -2.1558 -0.9157 13 6 9.7622 -1.9023 -1.4450 14 6 10.1796 -3.0622 -2.3520 15 6 11.5664 -2.7751 -2.9359 16 7 12.4999 -2.5048 -1.8340 17 6 13.6720 -3.2045 -1.7250 18 1 13.7216 -4.2303 -2.0591 19 6 14.7964 -2.5952 -1.1853 20 7 14.8474 -1.2843 -1.0788 21 14 16.2373 -3.6357 -0.6102 22 1 16.7684 -4.4206 -1.7535 23 1 17.3049 -2.7516 -0.0775 24 1 15.7835 -4.5621 0.4581 25 6 12.1495 -1.4720 -0.8490 26 6 10.7561 -1.7737 -0.2885 27 6 3.5786 -1.2009 -0.0057 28 6 2.1971 -1.1982 0.0009 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6559 2.1325 -0.0004 33 1 4.1174 2.1367 -0.0010 34 1 6.9352 -1.2513 1.9590 35 1 5.3597 -2.0369 1.6964 36 1 6.8594 -2.8718 1.2260 37 1 9.7529 -0.9765 -2.0205 38 1 9.4583 -3.1681 -3.1623 39 1 10.2130 -3.9841 -1.7714 40 1 11.9106 -3.6404 -3.5025 41 1 11.5140 -1.9062 -3.5919 42 1 15.6329 -0.8585 -0.7013 43 1 12.1451 -0.4952 -1.3328 44 1 12.8781 -1.4749 -0.0382 45 1 10.4453 -0.9624 0.3699 46 1 10.7842 -2.7077 0.2727 47 1 4.1172 -2.1370 -0.0103 48 1 1.6557 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120858884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:31 Heat of formation + Delta-G solvation = -82.433704 kcal Electronic energy + Delta-G solvation = -28325.375376 eV Core-core repulsion = 24346.198870 eV Total energy + Delta-G solvation = -3979.176506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.01100 -40.08442 -38.22849 -37.29582 -35.83189 -33.11436 -32.60620 -31.82483 -31.09619 -30.27383 -29.74000 -26.85802 -25.66476 -24.66203 -23.41334 -22.39797 -22.24017 -21.52170 -20.38308 -19.37876 -18.71759 -17.50299 -17.08183 -16.64073 -16.16264 -15.73607 -15.44432 -15.21617 -14.83119 -14.69179 -14.18618 -14.02068 -13.83228 -13.67838 -13.55918 -13.26891 -13.15251 -12.90298 -12.72221 -12.58301 -12.46539 -12.34178 -11.96317 -11.83816 -11.55842 -11.34574 -11.22374 -11.19586 -11.06255 -10.76293 -10.72810 -10.36852 -10.27437 -10.23335 -9.96966 -9.70496 -9.45561 -9.32317 -8.51228 -8.36151 -6.70133 -5.84020 -3.30824 1.01071 1.08739 2.11310 2.21592 3.32531 3.36776 3.42043 3.42387 3.43331 4.32391 4.45506 4.45871 4.53144 4.53934 4.62021 4.66224 4.90959 5.01512 5.13705 5.19504 5.25941 5.28610 5.34897 5.36513 5.36977 5.39696 5.49684 5.57842 5.67450 5.72168 5.77776 5.96978 5.97625 6.03012 6.16543 6.19253 6.28399 6.39502 6.43941 6.47587 6.54702 6.66622 6.80150 6.89765 7.06263 7.24315 7.53719 7.76670 7.85491 8.41648 9.15253 9.77283 10.36354 11.25031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036526 B = 0.001974 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.396291 B =14180.182477 C =14304.012575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C -0.080 4.080 4 C -0.144 4.144 5 C 0.128 3.872 6 O -0.288 6.288 7 C 0.095 3.905 8 H 0.108 0.892 9 C -0.175 4.175 10 C 0.461 3.539 11 O -0.484 6.484 12 O -0.353 6.353 13 C 0.099 3.901 14 C -0.127 4.127 15 C 0.148 3.852 16 N -0.590 5.590 17 C -0.261 4.261 18 H 0.065 0.935 19 C 0.008 3.992 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.178 3.822 26 C -0.154 4.154 27 C -0.208 4.208 28 C -0.079 4.079 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.256 0.744 43 H 0.024 0.976 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.132 0.868 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 -0.105 3.296 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.098 4.098 4 C -0.162 4.162 5 C 0.083 3.917 6 O -0.202 6.202 7 C 0.037 3.963 8 H 0.126 0.874 9 C -0.232 4.232 10 C 0.302 3.698 11 O -0.369 6.369 12 O -0.270 6.270 13 C 0.046 3.954 14 C -0.167 4.167 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.051 3.949 26 C -0.193 4.193 27 C -0.226 4.226 28 C -0.098 4.098 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.150 0.850 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.047 0.500 3.284 27.251 hybrid contribution 0.838 -0.514 0.303 1.028 sum -26.210 -0.014 3.587 26.454 Atomic orbital electron populations 1.20719 0.91058 1.02633 1.02177 1.19857 0.96263 0.93075 1.03584 1.20857 0.92840 0.97871 0.98269 1.20474 0.93744 0.96475 1.05546 1.19036 0.81752 0.94439 0.96517 1.86176 1.16459 1.29672 1.87879 1.21645 0.89771 0.85310 0.99560 0.87437 1.22328 1.04286 1.02408 0.94206 1.22785 0.87206 0.83848 0.75993 1.90708 1.73048 1.25878 1.47315 1.86487 1.29252 1.36124 1.75153 1.23016 0.76152 1.00277 0.95984 1.22252 0.99190 0.97374 0.97860 1.20896 0.87516 0.98812 0.90658 1.44052 1.19387 1.43417 1.24442 1.19086 0.86857 0.93485 1.39668 0.91727 1.25175 0.97201 0.95226 1.01558 1.70023 1.29467 1.07527 1.47171 0.86362 0.81899 0.79499 0.78923 1.20734 1.21592 1.20906 1.20696 0.90129 0.90667 0.93363 1.22675 0.98240 1.01548 0.96876 1.21333 0.95500 0.97177 1.08631 1.20831 0.93154 0.97766 0.98004 0.91405 0.91709 0.91672 0.85309 0.84899 0.90522 0.90375 0.89113 0.90166 0.92202 0.91048 0.91704 0.96063 0.93408 0.95765 0.89572 0.92704 0.91563 0.85022 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.13 -0.99 5.88 -104.60 -0.62 -1.61 16 3 C -0.08 -0.66 9.69 -39.61 -0.38 -1.05 16 4 C -0.14 -1.47 9.99 -39.44 -0.39 -1.86 16 5 C 0.13 1.43 6.58 -39.22 -0.26 1.17 16 6 O -0.29 -3.86 9.34 -39.35 -0.37 -4.23 16 7 C 0.09 1.12 2.76 -27.89 -0.08 1.04 16 8 H 0.11 1.01 6.33 -51.93 -0.33 0.68 16 9 C -0.18 -1.66 9.13 37.15 0.34 -1.33 16 10 C 0.46 7.31 7.26 36.00 0.26 7.57 16 11 O -0.48 -9.43 15.73 -25.47 -0.40 -9.83 16 12 O -0.35 -5.70 9.87 -39.26 -0.39 -6.09 16 13 C 0.10 1.82 2.41 -26.70 -0.06 1.76 16 14 C -0.13 -2.23 5.74 -26.61 -0.15 -2.38 16 15 C 0.15 3.07 6.51 -3.71 -0.02 3.04 16 16 N -0.59 -14.74 2.98 -172.29 -0.51 -15.25 16 17 C -0.26 -7.10 9.54 -15.06 -0.14 -7.24 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 19 C 0.01 0.22 4.90 -17.43 -0.09 0.14 16 20 N -0.90 -26.12 11.48 55.49 0.64 -25.48 16 21 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.18 4.30 5.27 -3.69 -0.02 4.28 16 26 C -0.15 -3.10 5.72 -26.61 -0.15 -3.25 16 27 C -0.21 -1.89 8.19 -39.43 -0.32 -2.22 16 28 C -0.08 -0.63 9.69 -39.60 -0.38 -1.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.60 6.84 -51.93 -0.36 0.24 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.28 7.93 -51.92 -0.41 0.87 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 2.30 6.37 -51.93 -0.33 1.97 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.13 0.98 5.42 -52.49 -0.28 0.69 16 48 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.05 389.45 -9.85 -41.90 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.54 Total: -0.19 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.12 Total: -3.15 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.12 Total: -40.73 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.16 Total: -20.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.05 -9.85 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120858884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.532 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds