Wall clock time and date at job start Tue Mar 31 2020 17:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.94653 * 2 1 4 4 C 1.38146 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.94892 * 359.97438 * 4 3 2 6 6 O 1.35907 * 120.05892 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00087 * 184.18597 * 6 5 4 8 8 H 1.09004 * 109.47295 * 36.59652 * 7 6 5 9 9 C 1.52994 * 109.47039 * 276.59712 * 7 6 5 10 10 C 1.50697 * 109.47236 * 156.59540 * 7 6 5 11 11 O 1.20833 * 119.99716 * 5.00220 * 10 7 6 12 12 O 1.34230 * 120.00314 * 185.00010 * 10 7 6 13 13 C 1.45200 * 117.00044 * 180.02562 * 12 10 7 14 14 C 1.53038 * 109.45898 * 210.00062 * 13 12 10 15 15 C 1.53189 * 109.31285 * 178.61473 * 14 13 12 16 16 N 1.46921 * 108.89350 * 54.56202 * 15 14 13 17 17 C 1.36943 * 120.62933 * 126.46107 * 16 15 14 18 18 H 1.07996 * 120.00567 * 328.04930 * 17 16 15 19 19 C 1.38812 * 119.99664 * 148.04571 * 17 16 15 20 20 N 1.31621 * 120.00194 * 343.54689 * 19 17 16 21 21 Si 1.86802 * 120.00039 * 163.55018 * 19 17 16 22 22 H 1.48503 * 109.46918 * 59.99639 * 21 19 17 23 23 H 1.48495 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46688 * 300.00140 * 21 19 17 25 25 C 1.46955 * 118.71709 * 306.63804 * 16 15 14 26 26 C 1.53031 * 109.46253 * 89.92887 * 13 12 10 27 27 C 1.38731 * 119.89010 * 0.27297 * 5 4 3 28 28 C 1.38155 * 119.93927 * 359.43432 * 27 5 4 29 29 H 1.08994 * 109.47368 * 89.99974 * 1 2 3 30 30 H 1.08999 * 109.47339 * 209.99945 * 1 2 3 31 31 H 1.08998 * 109.46614 * 329.99651 * 1 2 3 32 32 H 1.07993 * 119.97180 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.02385 * 179.97438 * 4 3 2 34 34 H 1.08993 * 109.47439 * 299.99863 * 9 7 6 35 35 H 1.09005 * 109.47415 * 60.00664 * 9 7 6 36 36 H 1.09000 * 109.47316 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.44829 * 329.96194 * 13 12 10 38 38 H 1.09000 * 109.50214 * 58.65404 * 14 13 12 39 39 H 1.09006 * 109.49645 * 298.56387 * 14 13 12 40 40 H 1.09010 * 109.58366 * 174.42234 * 15 14 13 41 41 H 1.08997 * 109.58931 * 294.69774 * 15 14 13 42 42 H 0.96999 * 120.00289 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.46948 * 293.57656 * 25 16 15 44 44 H 1.09003 * 109.71525 * 173.28812 * 25 16 15 45 45 H 1.08999 * 109.50444 * 301.33784 * 26 13 12 46 46 H 1.09003 * 109.50097 * 61.43358 * 26 13 12 47 47 H 1.07994 * 120.03371 * 179.72327 * 27 5 4 48 48 H 1.08001 * 119.97175 * 180.27211 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2006 -0.0005 5 6 4.2734 -0.0002 -0.0005 6 8 5.6325 -0.0003 -0.0005 7 6 6.2812 -1.2701 -0.0935 8 1 5.7109 -1.9218 -0.7555 9 6 6.3650 -1.9029 1.2969 10 6 7.6710 -1.0850 -0.6458 11 8 8.0985 0.0273 -0.8457 12 8 8.4341 -2.1558 -0.9157 13 6 9.7622 -1.9023 -1.4450 14 6 10.1796 -3.0622 -2.3520 15 6 11.5664 -2.7751 -2.9359 16 7 12.4999 -2.5048 -1.8340 17 6 13.6720 -3.2045 -1.7250 18 1 13.7216 -4.2303 -2.0591 19 6 14.7964 -2.5952 -1.1853 20 7 14.8474 -1.2843 -1.0788 21 14 16.2373 -3.6357 -0.6102 22 1 16.7684 -4.4206 -1.7535 23 1 17.3049 -2.7516 -0.0775 24 1 15.7835 -4.5621 0.4581 25 6 12.1495 -1.4720 -0.8490 26 6 10.7561 -1.7737 -0.2885 27 6 3.5786 -1.2009 -0.0057 28 6 2.1971 -1.1982 0.0009 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6559 2.1325 -0.0004 33 1 4.1174 2.1367 -0.0010 34 1 6.9352 -1.2513 1.9590 35 1 5.3597 -2.0369 1.6964 36 1 6.8594 -2.8718 1.2260 37 1 9.7529 -0.9765 -2.0205 38 1 9.4583 -3.1681 -3.1623 39 1 10.2130 -3.9841 -1.7714 40 1 11.9106 -3.6404 -3.5025 41 1 11.5140 -1.9062 -3.5919 42 1 15.6329 -0.8585 -0.7013 43 1 12.1451 -0.4952 -1.3328 44 1 12.8781 -1.4749 -0.0382 45 1 10.4453 -0.9624 0.3699 46 1 10.7842 -2.7077 0.2727 47 1 4.1172 -2.1370 -0.0103 48 1 1.6557 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120858884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:30 Heat of formation + Delta-G solvation = -98.323479 kcal Electronic energy + Delta-G solvation = -28326.064408 eV Core-core repulsion = 24346.198870 eV Total energy + Delta-G solvation = -3979.865538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10749 -41.10324 -39.31352 -38.61756 -37.34563 -34.69110 -33.69196 -32.53649 -32.08348 -31.76416 -31.48104 -27.50853 -27.26001 -25.89240 -24.34280 -24.00104 -23.65289 -22.45668 -21.47731 -21.06971 -19.58615 -18.93761 -18.58615 -17.97760 -17.33146 -16.90735 -16.44606 -16.27077 -16.22397 -15.73326 -15.45016 -15.34264 -15.00272 -14.74708 -14.67400 -14.48055 -14.37584 -14.25684 -14.04562 -13.50387 -13.31257 -13.26609 -13.10247 -12.97925 -12.86522 -12.70656 -12.60658 -12.44631 -12.40799 -12.15837 -12.01154 -11.95868 -11.90214 -11.76324 -11.55933 -11.34786 -11.11375 -10.58164 -9.96835 -9.05573 -8.72878 -7.92172 -5.42514 0.36869 0.40934 0.95243 1.02210 1.47312 1.49957 1.56753 2.35913 2.49327 2.76892 3.22892 3.30283 3.55769 3.60124 3.70316 3.74504 3.83047 3.87379 3.95213 4.09611 4.10726 4.31374 4.34954 4.45668 4.51649 4.53791 4.54732 4.68075 4.69964 4.77683 4.83726 4.85227 4.91613 4.93033 5.04253 5.06533 5.10810 5.18196 5.22090 5.28179 5.35721 5.38504 5.40580 5.57636 5.63683 5.69046 5.82486 6.30588 6.36064 6.56313 7.08880 7.77062 8.32733 9.15425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036526 B = 0.001974 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.396291 B =14180.182477 C =14304.012575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C -0.085 4.085 4 C -0.164 4.164 5 C 0.099 3.901 6 O -0.318 6.318 7 C 0.100 3.900 8 H 0.138 0.862 9 C -0.169 4.169 10 C 0.459 3.541 11 O -0.527 6.527 12 O -0.339 6.339 13 C 0.105 3.895 14 C -0.113 4.113 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.269 4.269 18 H 0.073 0.927 19 C -0.048 4.048 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.297 1.297 24 H -0.275 1.275 25 C 0.187 3.813 26 C -0.140 4.140 27 C -0.208 4.208 28 C -0.083 4.083 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.015 0.985 42 H 0.251 0.749 43 H -0.005 1.005 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.150 0.850 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.447 -2.629 3.423 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.183 4.183 5 C 0.055 3.945 6 O -0.233 6.233 7 C 0.043 3.957 8 H 0.155 0.845 9 C -0.226 4.226 10 C 0.302 3.698 11 O -0.416 6.416 12 O -0.255 6.255 13 C 0.050 3.950 14 C -0.152 4.152 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.399 4.399 18 H 0.090 0.910 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.060 3.940 26 C -0.179 4.179 27 C -0.227 4.227 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.166 0.834 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.167 0.833 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -30.002 -2.055 3.400 30.264 hybrid contribution 1.603 0.336 0.223 1.653 sum -28.400 -1.720 3.623 28.681 Atomic orbital electron populations 1.20776 0.89077 1.03689 1.02954 1.20255 0.97780 0.92807 1.02050 1.21125 0.92108 0.99264 0.97769 1.20648 0.94788 0.96259 1.06601 1.19281 0.80922 0.95668 0.98597 1.86126 1.17937 1.30604 1.88597 1.21806 0.87147 0.85568 1.01153 0.84463 1.22348 1.05643 1.02274 0.92379 1.23768 0.88442 0.82966 0.74633 1.90698 1.74160 1.27477 1.49218 1.86490 1.28001 1.36071 1.74973 1.22725 0.77012 1.00128 0.95089 1.22056 0.97674 0.96795 0.98626 1.21067 0.88540 0.98920 0.89772 1.44301 1.19775 1.43190 1.25906 1.19479 0.87580 0.93991 1.38852 0.90954 1.25990 0.99984 0.96204 1.02188 1.70189 1.30042 1.09275 1.48599 0.85300 0.78465 0.77796 0.78619 1.19685 1.22291 1.20130 1.20399 0.91724 0.89554 0.92291 1.22414 0.96333 1.01691 0.97452 1.21543 0.96150 0.96942 1.08015 1.21203 0.92858 0.98974 0.97045 0.90645 0.90510 0.90862 0.83429 0.85715 0.92066 0.88075 0.87776 0.91969 0.88812 0.90279 0.90583 0.96740 0.94003 0.98701 0.92654 0.92783 0.90878 0.83276 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 71.24 0.71 -0.09 16 2 C -0.13 -1.69 5.88 -19.85 -0.12 -1.80 16 3 C -0.08 -1.29 9.69 22.25 0.22 -1.08 16 4 C -0.16 -3.35 9.99 22.36 0.22 -3.13 16 5 C 0.10 2.16 6.58 22.50 0.15 2.31 16 6 O -0.32 -8.49 9.34 -73.47 -0.69 -9.18 16 7 C 0.10 2.23 2.76 29.84 0.08 2.31 16 8 H 0.14 2.19 6.33 -2.38 -0.02 2.17 16 9 C -0.17 -2.87 9.13 71.98 0.66 -2.22 16 10 C 0.46 14.31 7.26 71.23 0.52 14.83 16 11 O -0.53 -21.11 15.73 28.36 0.45 -20.67 16 12 O -0.34 -10.40 9.87 -51.42 -0.51 -10.91 16 13 C 0.10 3.79 2.41 30.62 0.07 3.86 16 14 C -0.11 -3.70 5.74 30.67 0.18 -3.53 16 15 C 0.14 5.81 6.51 86.36 0.56 6.37 16 16 N -0.61 -30.73 2.98 -699.00 -2.08 -32.81 16 17 C -0.27 -14.67 9.54 84.03 0.80 -13.87 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 19 C -0.05 -2.67 4.90 84.86 0.42 -2.25 16 20 N -0.94 -56.29 11.48 21.65 0.25 -56.04 16 21 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.19 9.40 5.27 86.36 0.46 9.85 16 26 C -0.14 -5.68 5.72 30.67 0.18 -5.50 16 27 C -0.21 -3.30 8.19 22.37 0.18 -3.12 16 28 C -0.08 -1.07 9.69 22.26 0.22 -0.86 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 31 H 0.07 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.26 6.84 -2.38 -0.02 1.25 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 2.50 7.16 -2.38 -0.02 2.49 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.08 2.90 7.93 -2.38 -0.02 2.88 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 44 H 0.05 3.10 6.37 -2.39 -0.02 3.08 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.15 1.70 5.42 -2.91 -0.02 1.69 16 48 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -72.04 389.45 5.89 -66.15 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.94 Total: 14.76 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.50 Total: 2.09 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -1.83 Total: -88.85 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.75 Total: -40.75 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.04 5.89 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120858884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.175 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds