Wall clock time and date at job start Tue Mar 31 2020 18:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99885 * 2 1 4 4 C 1.52992 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46978 * 300.00525 * 3 2 1 6 6 O 1.20821 * 119.99796 * 146.15891 * 5 3 2 7 7 O 1.34222 * 119.99782 * 326.15578 * 5 3 2 8 8 C 1.45205 * 116.99813 * 180.02562 * 7 5 3 9 9 C 1.53038 * 109.46026 * 270.02986 * 8 7 5 10 10 C 1.53198 * 109.30999 * 178.60147 * 9 8 7 11 11 N 1.46925 * 108.76651 * 54.65400 * 10 9 8 12 12 C 1.36942 * 120.62932 * 126.35984 * 11 10 9 13 13 H 1.07998 * 119.99767 * 329.34802 * 12 11 10 14 14 C 1.38807 * 119.99830 * 149.34945 * 12 11 10 15 15 N 1.31621 * 120.00423 * 348.10450 * 14 12 11 16 16 Si 1.86802 * 120.00145 * 168.10117 * 14 12 11 17 17 H 1.48505 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46949 * 119.99870 * 16 14 12 19 19 H 1.48489 * 109.47536 * 240.00116 * 16 14 12 20 20 C 1.46924 * 118.74122 * 306.38579 * 11 10 9 21 21 C 1.53042 * 109.45946 * 149.97328 * 8 7 5 22 22 C 1.50701 * 109.46996 * 59.99823 * 3 2 1 23 23 C 1.38234 * 120.00661 * 275.87779 * 22 3 2 24 24 C 1.38234 * 120.00141 * 180.02562 * 23 22 3 25 25 C 1.38231 * 120.00222 * 359.95399 * 24 23 22 26 26 C 1.38243 * 120.00116 * 0.27751 * 25 24 23 27 27 C 1.38239 * 119.99348 * 359.53226 * 26 25 24 28 28 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47093 * 299.99756 * 1 2 3 30 30 H 1.08999 * 109.47643 * 59.99821 * 1 2 3 31 31 H 1.09002 * 109.47100 * 300.00071 * 4 3 2 32 32 H 1.09007 * 109.47110 * 59.99918 * 4 3 2 33 33 H 1.08994 * 109.47567 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.45956 * 30.00570 * 8 7 5 35 35 H 1.09003 * 109.49882 * 298.56271 * 9 8 7 36 36 H 1.08995 * 109.49819 * 58.66423 * 9 8 7 37 37 H 1.09001 * 109.59669 * 294.86544 * 10 9 8 38 38 H 1.08999 * 109.69991 * 174.50621 * 10 9 8 39 39 H 0.96999 * 120.00372 * 180.02562 * 15 14 12 40 40 H 1.09006 * 109.58686 * 293.81865 * 20 11 10 41 41 H 1.09004 * 109.70557 * 173.46145 * 20 11 10 42 42 H 1.08998 * 109.49972 * 301.33907 * 21 8 7 43 43 H 1.09003 * 109.49850 * 61.40632 * 21 8 7 44 44 H 1.08001 * 119.99406 * 359.97438 * 23 22 3 45 45 H 1.07995 * 119.99662 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00125 * 180.02562 * 25 24 23 47 47 H 1.07991 * 120.00456 * 179.72355 * 26 25 24 48 48 H 1.08004 * 119.99762 * 180.20762 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 1.5654 2.0534 -1.2305 6 8 1.3917 3.2480 -1.1814 7 8 1.3623 1.3923 -2.3808 8 6 0.9352 2.1769 -3.5254 9 6 -0.5936 2.2380 -3.5599 10 6 -1.0397 3.0955 -4.7485 11 7 -0.4297 2.5598 -5.9731 12 6 -1.2044 2.2389 -7.0557 13 1 -2.2191 1.8984 -6.9116 14 6 -0.6855 2.3512 -8.3382 15 7 0.4538 2.9804 -8.5345 16 14 -1.6040 1.6093 -9.7858 17 1 -2.8496 0.9613 -9.3021 18 1 -1.9480 2.6803 -10.7552 19 1 -0.7450 0.5969 -10.4508 20 6 1.0273 2.3745 -6.0139 21 6 1.4502 1.5255 -4.8109 22 6 1.5655 2.0533 1.2305 23 6 0.3537 2.7185 1.2349 24 6 -0.0539 3.4049 2.3634 25 6 0.7498 3.4253 3.4879 26 6 1.9638 2.7641 3.4820 27 6 2.3696 2.0745 2.3547 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.8574 0.6437 0.8891 32 1 3.8567 0.6440 -0.8909 33 1 3.9787 2.1805 -0.0002 34 1 1.3372 3.1868 -3.4439 35 1 -0.9957 1.2305 -3.6667 36 1 -0.9610 2.6807 -2.6341 37 1 -0.7150 4.1252 -4.5987 38 1 -2.1256 3.0640 -4.8372 39 1 0.8163 3.0591 -9.4307 40 1 1.5206 3.3454 -5.9674 41 1 1.3074 1.8661 -6.9365 42 1 2.5377 1.4608 -4.7756 43 1 1.0291 0.5245 -4.9055 44 1 -0.2741 2.7026 0.3563 45 1 -1.0004 3.9249 2.3666 46 1 0.4311 3.9612 4.3697 47 1 2.5938 2.7838 4.3589 48 1 3.3166 1.5551 2.3512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121001425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:41 Heat of formation + Delta-G solvation = -76.428878 kcal Electronic energy + Delta-G solvation = -29895.226840 eV Core-core repulsion = 25916.310723 eV Total energy + Delta-G solvation = -3978.916117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.27782 -39.46687 -37.83929 -37.31847 -35.87159 -33.25136 -32.69457 -31.22705 -30.40836 -29.90670 -29.56146 -26.54932 -25.86066 -24.84687 -23.04331 -22.55714 -22.23346 -21.52704 -20.11173 -19.32482 -18.14876 -17.58886 -16.99186 -16.48719 -16.38799 -15.81457 -15.25741 -14.94807 -14.79159 -14.58423 -14.32307 -13.92440 -13.63680 -13.61339 -13.45386 -13.14530 -12.90488 -12.79780 -12.65843 -12.54758 -12.46026 -12.11442 -11.99878 -11.57879 -11.32024 -11.29397 -11.13980 -11.03817 -10.80652 -10.73281 -10.56221 -10.38661 -10.16974 -10.03652 -9.80854 -9.61170 -9.45028 -9.13166 -9.08310 -8.53459 -6.71460 -5.83712 -3.30994 0.99533 1.17685 2.17162 2.69730 3.34764 3.38031 3.42431 3.44580 3.66408 4.15438 4.44966 4.48246 4.72662 4.74965 4.80961 4.86586 5.17460 5.19973 5.22551 5.27459 5.30137 5.33792 5.38240 5.38935 5.42449 5.50132 5.62062 5.66783 5.69723 5.77682 5.80457 5.95628 6.18255 6.19472 6.24902 6.27262 6.32064 6.35487 6.48259 6.56246 6.68969 6.71214 6.73507 6.81479 6.91269 7.27993 7.58839 7.75091 7.87842 8.41455 9.16119 9.77205 10.34870 11.25210 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.002698 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.987462 B =10373.778915 C =10633.867570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.350 6.350 3 C 0.172 3.828 4 C -0.142 4.142 5 C 0.438 3.562 6 O -0.495 6.495 7 O -0.343 6.343 8 C 0.094 3.906 9 C -0.145 4.145 10 C 0.149 3.851 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.067 0.933 14 C 0.004 3.996 15 N -0.905 5.905 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.175 3.825 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.126 4.126 27 C -0.094 4.094 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.021 0.979 38 H 0.061 0.939 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -3.449 23.491 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.268 6.268 3 C 0.131 3.869 4 C -0.198 4.198 5 C 0.279 3.721 6 O -0.383 6.383 7 O -0.259 6.259 8 C 0.040 3.960 9 C -0.184 4.184 10 C 0.023 3.977 11 N -0.315 5.315 12 C -0.383 4.383 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.549 5.549 16 Si 0.736 3.264 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.215 1.215 20 C 0.049 3.951 21 C -0.174 4.174 22 C -0.111 4.111 23 C -0.102 4.102 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.144 4.144 27 C -0.112 4.112 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.034 -3.224 23.265 23.831 hybrid contribution -0.704 0.104 -0.843 1.104 sum 3.330 -3.121 22.422 22.882 Atomic orbital electron populations 1.23036 0.80441 1.03719 1.00726 1.88063 1.20518 1.23942 1.94313 1.20151 0.96467 0.83185 0.87112 1.21880 0.89203 1.03896 1.04856 1.24181 0.74563 0.87313 0.86090 1.90678 1.46643 1.15947 1.84992 1.86662 1.77038 1.43121 1.19044 1.23014 0.95471 0.95153 0.82314 1.22465 0.93945 1.02199 0.99837 1.20857 0.97171 0.93833 0.85879 1.44089 1.02778 1.73292 1.11354 1.19229 0.97065 1.37788 0.84262 0.91578 1.25165 0.97841 0.98736 0.97737 1.69975 1.20585 1.43439 1.20927 0.86165 0.79220 0.78523 0.82513 1.20202 1.21615 1.21479 1.20829 0.83721 0.95897 0.94689 1.22469 0.99642 1.01575 0.93746 1.19799 0.96131 1.00183 0.94961 1.21131 0.95502 0.95436 0.98118 1.21136 1.00254 0.99517 0.93143 1.21225 0.94568 0.98823 0.98205 1.21126 0.96810 0.98297 0.98195 1.21054 0.99365 0.98480 0.92280 0.88661 0.93308 0.93147 0.89634 0.90017 0.89966 0.90389 0.91332 0.93009 0.96089 0.92088 0.93514 0.96045 0.88382 0.92388 0.91430 0.86221 0.85743 0.85911 0.85713 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.78 101.05 0.99 1.18 16 2 O -0.35 -4.57 10.14 -49.49 -0.50 -5.08 16 3 C 0.17 2.21 1.02 -92.92 -0.09 2.12 16 4 C -0.14 -1.45 7.95 37.15 0.30 -1.15 16 5 C 0.44 6.95 4.85 36.01 0.17 7.12 16 6 O -0.50 -8.88 14.02 -18.75 -0.26 -9.14 16 7 O -0.34 -5.89 8.87 -44.50 -0.39 -6.29 16 8 C 0.09 1.77 2.42 -26.69 -0.06 1.70 16 9 C -0.14 -2.70 5.72 -26.61 -0.15 -2.85 16 10 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 11 N -0.59 -14.90 2.99 -172.31 -0.51 -15.42 16 12 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 13 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 14 C 0.00 0.11 5.03 -17.43 -0.09 0.02 16 15 N -0.90 -26.01 11.07 55.49 0.61 -25.39 16 16 Si 0.91 21.51 29.57 -169.99 -5.03 16.48 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.17 4.17 5.26 -3.71 -0.02 4.15 16 21 C -0.13 -2.67 5.74 -26.61 -0.15 -2.83 16 22 C -0.11 -1.32 4.24 -104.62 -0.44 -1.77 16 23 C -0.08 -1.03 6.37 -39.58 -0.25 -1.28 16 24 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 25 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.09 -0.92 9.13 -39.58 -0.36 -1.28 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.52 5.93 -51.93 -0.31 0.21 16 30 H 0.05 0.65 6.64 -51.93 -0.34 0.31 16 31 H 0.08 0.67 6.59 -51.93 -0.34 0.33 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 2.59 6.09 -51.93 -0.32 2.27 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.12 1.59 6.52 -52.49 -0.34 1.25 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.13 0.99 6.04 -52.48 -0.32 0.67 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -31.31 378.23 -9.29 -40.61 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.37 Total: 1.80 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.53 Total: -3.27 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.10 Total: -40.81 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.16 Total: -20.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.31 -9.29 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121001425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.822 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds