Wall clock time and date at job start Tue Mar 31 2020 18:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99885 * 2 1 4 4 C 1.52992 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46978 * 300.00525 * 3 2 1 6 6 O 1.20821 * 119.99796 * 146.15891 * 5 3 2 7 7 O 1.34222 * 119.99782 * 326.15578 * 5 3 2 8 8 C 1.45205 * 116.99813 * 180.02562 * 7 5 3 9 9 C 1.53038 * 109.46026 * 270.02986 * 8 7 5 10 10 C 1.53198 * 109.30999 * 178.60147 * 9 8 7 11 11 N 1.46925 * 108.76651 * 54.65400 * 10 9 8 12 12 C 1.36942 * 120.62932 * 126.35984 * 11 10 9 13 13 H 1.07998 * 119.99767 * 329.34802 * 12 11 10 14 14 C 1.38807 * 119.99830 * 149.34945 * 12 11 10 15 15 N 1.31621 * 120.00423 * 348.10450 * 14 12 11 16 16 Si 1.86802 * 120.00145 * 168.10117 * 14 12 11 17 17 H 1.48505 * 109.46977 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46949 * 119.99870 * 16 14 12 19 19 H 1.48489 * 109.47536 * 240.00116 * 16 14 12 20 20 C 1.46924 * 118.74122 * 306.38579 * 11 10 9 21 21 C 1.53042 * 109.45946 * 149.97328 * 8 7 5 22 22 C 1.50701 * 109.46996 * 59.99823 * 3 2 1 23 23 C 1.38234 * 120.00661 * 275.87779 * 22 3 2 24 24 C 1.38234 * 120.00141 * 180.02562 * 23 22 3 25 25 C 1.38231 * 120.00222 * 359.95399 * 24 23 22 26 26 C 1.38243 * 120.00116 * 0.27751 * 25 24 23 27 27 C 1.38239 * 119.99348 * 359.53226 * 26 25 24 28 28 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47093 * 299.99756 * 1 2 3 30 30 H 1.08999 * 109.47643 * 59.99821 * 1 2 3 31 31 H 1.09002 * 109.47100 * 300.00071 * 4 3 2 32 32 H 1.09007 * 109.47110 * 59.99918 * 4 3 2 33 33 H 1.08994 * 109.47567 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.45956 * 30.00570 * 8 7 5 35 35 H 1.09003 * 109.49882 * 298.56271 * 9 8 7 36 36 H 1.08995 * 109.49819 * 58.66423 * 9 8 7 37 37 H 1.09001 * 109.59669 * 294.86544 * 10 9 8 38 38 H 1.08999 * 109.69991 * 174.50621 * 10 9 8 39 39 H 0.96999 * 120.00372 * 180.02562 * 15 14 12 40 40 H 1.09006 * 109.58686 * 293.81865 * 20 11 10 41 41 H 1.09004 * 109.70557 * 173.46145 * 20 11 10 42 42 H 1.08998 * 109.49972 * 301.33907 * 21 8 7 43 43 H 1.09003 * 109.49850 * 61.40632 * 21 8 7 44 44 H 1.08001 * 119.99406 * 359.97438 * 23 22 3 45 45 H 1.07995 * 119.99662 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00125 * 180.02562 * 25 24 23 47 47 H 1.07991 * 120.00456 * 179.72355 * 26 25 24 48 48 H 1.08004 * 119.99762 * 180.20762 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 1.5654 2.0534 -1.2305 6 8 1.3917 3.2480 -1.1814 7 8 1.3623 1.3923 -2.3808 8 6 0.9352 2.1769 -3.5254 9 6 -0.5936 2.2380 -3.5599 10 6 -1.0397 3.0955 -4.7485 11 7 -0.4297 2.5598 -5.9731 12 6 -1.2044 2.2389 -7.0557 13 1 -2.2191 1.8984 -6.9116 14 6 -0.6855 2.3512 -8.3382 15 7 0.4538 2.9804 -8.5345 16 14 -1.6040 1.6093 -9.7858 17 1 -2.8496 0.9613 -9.3021 18 1 -1.9480 2.6803 -10.7552 19 1 -0.7450 0.5969 -10.4508 20 6 1.0273 2.3745 -6.0139 21 6 1.4502 1.5255 -4.8109 22 6 1.5655 2.0533 1.2305 23 6 0.3537 2.7185 1.2349 24 6 -0.0539 3.4049 2.3634 25 6 0.7498 3.4253 3.4879 26 6 1.9638 2.7641 3.4820 27 6 2.3696 2.0745 2.3547 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.8574 0.6437 0.8891 32 1 3.8567 0.6440 -0.8909 33 1 3.9787 2.1805 -0.0002 34 1 1.3372 3.1868 -3.4439 35 1 -0.9957 1.2305 -3.6667 36 1 -0.9610 2.6807 -2.6341 37 1 -0.7150 4.1252 -4.5987 38 1 -2.1256 3.0640 -4.8372 39 1 0.8163 3.0591 -9.4307 40 1 1.5206 3.3454 -5.9674 41 1 1.3074 1.8661 -6.9365 42 1 2.5377 1.4608 -4.7756 43 1 1.0291 0.5245 -4.9055 44 1 -0.2741 2.7026 0.3563 45 1 -1.0004 3.9249 2.3666 46 1 0.4311 3.9612 4.3697 47 1 2.5938 2.7838 4.3589 48 1 3.3166 1.5551 2.3512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121001425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:40 Heat of formation + Delta-G solvation = -92.449767 kcal Electronic energy + Delta-G solvation = -29895.921558 eV Core-core repulsion = 25916.310723 eV Total energy + Delta-G solvation = -3979.610835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.41796 -40.55274 -39.10063 -38.55545 -37.40214 -34.63248 -34.09769 -32.19797 -31.96851 -31.53282 -30.57976 -27.53252 -27.34721 -26.21829 -24.34742 -23.95697 -23.43853 -22.84681 -21.25465 -20.98840 -19.33817 -18.95677 -18.39529 -17.78891 -17.50488 -16.91984 -16.69375 -16.25581 -16.00538 -15.58281 -15.47721 -15.40448 -15.12118 -14.94707 -14.75405 -14.58531 -14.23924 -14.09162 -13.69615 -13.52991 -13.49919 -13.34216 -13.06375 -12.91980 -12.80194 -12.71747 -12.67686 -12.51530 -12.23474 -12.14954 -12.02444 -11.97573 -11.87399 -11.56563 -11.49027 -11.13967 -10.80848 -10.61216 -9.87384 -9.84175 -8.75265 -7.92376 -5.43385 0.22633 0.43689 0.92497 1.44324 1.47829 1.48718 1.58667 2.47974 2.49827 2.87074 3.21528 3.26282 3.39273 3.54897 3.73063 3.75830 3.79445 4.01545 4.07766 4.08049 4.22713 4.29925 4.33668 4.35725 4.50190 4.50683 4.54149 4.63195 4.64356 4.68406 4.72222 4.76525 4.81171 4.88262 4.94901 4.98628 5.03327 5.08640 5.15131 5.34057 5.40593 5.47465 5.49650 5.55438 5.59500 5.64680 5.77445 6.01640 6.35333 6.57526 7.09018 7.75458 8.29779 9.15220 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.002698 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.987462 B =10373.778915 C =10633.867570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.357 6.357 3 C 0.174 3.826 4 C -0.143 4.143 5 C 0.437 3.563 6 O -0.518 6.518 7 O -0.343 6.343 8 C 0.102 3.898 9 C -0.130 4.130 10 C 0.148 3.852 11 N -0.610 5.610 12 C -0.266 4.266 13 H 0.069 0.931 14 C -0.048 4.048 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.288 1.288 20 C 0.183 3.817 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.109 4.109 26 C -0.124 4.124 27 C -0.097 4.097 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.013 0.987 38 H 0.067 0.933 39 H 0.252 0.748 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.135 0.865 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -4.438 26.125 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.275 6.275 3 C 0.133 3.867 4 C -0.199 4.199 5 C 0.279 3.721 6 O -0.407 6.407 7 O -0.259 6.259 8 C 0.048 3.952 9 C -0.170 4.170 10 C 0.022 3.978 11 N -0.334 5.334 12 C -0.396 4.396 13 H 0.087 0.913 14 C -0.243 4.243 15 N -0.582 5.582 16 Si 0.800 3.200 17 H -0.190 1.190 18 H -0.218 1.218 19 H -0.214 1.214 20 C 0.057 3.943 21 C -0.160 4.160 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.152 4.152 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.115 4.115 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.153 0.847 46 H 0.168 0.832 47 H 0.175 0.825 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.300 -4.222 25.933 26.624 hybrid contribution -0.800 0.476 -1.540 1.799 sum 3.501 -3.745 24.394 24.926 Atomic orbital electron populations 1.23119 0.79932 1.04820 1.00174 1.88048 1.21146 1.24150 1.94171 1.20333 0.97857 0.82831 0.85697 1.21987 0.87193 1.04593 1.06151 1.25024 0.73485 0.87351 0.86221 1.90663 1.47647 1.17175 1.85217 1.86663 1.77268 1.42806 1.19179 1.22678 0.95346 0.94427 0.82790 1.22259 0.93933 1.01730 0.99033 1.20940 0.97444 0.93812 0.85592 1.44336 1.03132 1.73868 1.12028 1.19552 0.97427 1.37471 0.85169 0.91315 1.25941 0.98768 0.99378 1.00233 1.70134 1.22062 1.44797 1.21208 0.85128 0.78325 0.77471 0.79029 1.18985 1.21836 1.21419 1.20580 0.83349 0.95099 0.95315 1.22190 1.00751 1.00440 0.92651 1.19835 0.96656 1.01066 0.95330 1.21098 0.95980 0.97203 0.98282 1.21361 1.01183 0.99460 0.93201 1.21602 0.94336 0.98321 0.98424 1.21551 0.96901 0.96926 0.98750 1.21366 0.99835 0.98506 0.91772 0.86710 0.92612 0.94976 0.86766 0.90350 0.89553 0.91837 0.91081 0.91555 0.96887 0.91436 0.93839 0.98208 0.91121 0.90580 0.91451 0.88440 0.84703 0.83161 0.82541 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.78 113.37 1.11 1.45 16 2 O -0.36 -8.88 10.14 -135.34 -1.37 -10.25 16 3 C 0.17 4.28 1.02 -12.29 -0.01 4.27 16 4 C -0.14 -2.64 7.95 71.98 0.57 -2.07 16 5 C 0.44 13.83 4.85 71.24 0.35 14.17 16 6 O -0.52 -18.85 14.02 21.98 0.31 -18.54 16 7 O -0.34 -11.75 8.87 -46.31 -0.41 -12.16 16 8 C 0.10 3.86 2.42 30.62 0.07 3.93 16 9 C -0.13 -4.87 5.72 30.67 0.18 -4.69 16 10 C 0.15 6.45 6.52 86.36 0.56 7.01 16 11 N -0.61 -31.37 2.99 -699.08 -2.09 -33.46 16 12 C -0.27 -14.70 9.58 84.03 0.81 -13.90 16 13 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16 14 C -0.05 -2.66 5.03 84.86 0.43 -2.23 16 15 N -0.94 -55.25 11.07 21.65 0.24 -55.01 16 16 Si 0.97 44.66 29.57 68.60 2.03 46.69 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 C 0.18 9.02 5.26 86.36 0.45 9.47 16 21 C -0.12 -4.85 5.74 30.67 0.18 -4.67 16 22 C -0.13 -2.91 4.24 -19.86 -0.08 -3.00 16 23 C -0.11 -2.60 6.37 22.27 0.14 -2.46 16 24 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 25 C -0.11 -1.61 10.05 22.27 0.22 -1.39 16 26 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.10 -1.63 9.13 22.27 0.20 -1.42 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.16 5.93 -2.39 -0.01 1.15 16 30 H 0.03 0.83 6.64 -2.39 -0.02 0.81 16 31 H 0.11 1.42 6.59 -2.39 -0.02 1.41 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 2.60 7.16 -2.39 -0.02 2.59 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 40 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 41 H 0.07 3.87 6.09 -2.39 -0.01 3.86 16 42 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.10 2.70 6.52 -2.91 -0.02 2.68 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.16 1.13 8.06 -2.92 -0.02 1.11 16 48 H 0.15 1.74 6.04 -2.91 -0.02 1.72 16 Total: -1.00 -68.69 378.23 5.27 -63.42 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.95 Total: 18.68 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.62 Total: 0.64 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.85 Total: -88.47 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.48 Total: -40.95 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.69 5.27 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121001425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.033 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds