Wall clock time and date at job start Tue Mar 31 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47761 * 2 1 4 4 C 1.53085 * 109.48136 * 120.01984 * 2 1 3 5 5 C 1.53179 * 109.16155 * 62.37949 * 4 2 1 6 6 H 1.09005 * 109.61671 * 297.06732 * 5 4 2 7 7 N 1.46502 * 109.54784 * 176.84691 * 5 4 2 8 8 C 1.34773 * 120.00144 * 155.44000 * 7 5 4 9 9 O 1.21276 * 120.00268 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99842 * 180.02562 * 8 7 5 11 11 C 1.50696 * 109.47241 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96287 * 269.72614 * 11 10 8 13 13 C 1.38282 * 120.13503 * 179.76399 * 12 11 10 14 14 C 1.38127 * 120.06992 * 0.50793 * 13 12 11 15 15 C 1.38857 * 119.92791 * 359.74853 * 14 13 12 16 16 O 1.35757 * 120.06767 * 180.02562 * 15 14 13 17 17 C 1.34823 * 117.00073 * 354.44173 * 16 15 14 18 18 H 1.08002 * 120.00013 * 5.05384 * 17 16 15 19 19 C 1.38653 * 120.00264 * 185.05887 * 17 16 15 20 20 N 1.31557 * 120.00053 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46628 * 90.00385 * 21 19 17 23 23 H 1.48499 * 109.47398 * 210.00225 * 21 19 17 24 24 H 1.48498 * 109.47342 * 330.00967 * 21 19 17 25 25 C 1.38081 * 119.96505 * 90.00063 * 11 10 8 26 26 C 1.53180 * 109.03939 * 56.97874 * 5 4 2 27 27 C 1.53096 * 109.15816 * 303.02296 * 26 5 4 28 28 O 1.42896 * 109.48572 * 239.96929 * 2 1 3 29 29 H 1.08995 * 109.47557 * 299.97622 * 1 2 3 30 30 H 1.09004 * 109.47364 * 59.97477 * 1 2 3 31 31 H 1.09000 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47254 * 300.02300 * 3 2 1 34 34 H 1.09005 * 109.46615 * 60.02513 * 3 2 1 35 35 H 1.09004 * 109.52620 * 302.47527 * 4 2 1 36 36 H 1.09000 * 109.52474 * 182.28115 * 4 2 1 37 37 H 0.96996 * 119.99445 * 335.44763 * 7 5 4 38 38 H 1.09002 * 109.47203 * 300.00577 * 10 8 7 39 39 H 1.08997 * 109.47074 * 60.00350 * 10 8 7 40 40 H 1.07989 * 119.93518 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.96786 * 180.23176 * 13 12 11 42 42 H 1.07997 * 120.03648 * 179.76582 * 14 13 12 43 43 H 0.97001 * 119.99636 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.03853 * 359.97438 * 25 11 10 45 45 H 1.08999 * 109.51938 * 62.92281 * 26 5 4 46 46 H 1.08990 * 109.52569 * 183.11870 * 26 5 4 47 47 H 1.09007 * 109.47596 * 177.58894 * 27 26 5 48 48 H 1.08997 * 109.48071 * 297.62327 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7220 1.2496 5 6 1.5758 -2.1812 1.2123 6 1 0.4868 -2.2192 1.2417 7 7 2.1225 -2.8994 2.3662 8 6 1.4992 -3.9997 2.8323 9 8 0.4860 -4.3955 2.2962 10 6 2.0614 -4.7381 4.0197 11 6 1.1844 -5.9220 4.3362 12 6 0.1298 -5.7838 5.2206 13 6 -0.6802 -6.8666 5.5098 14 6 -0.4318 -8.0927 4.9241 15 6 0.6293 -8.2359 4.0399 16 8 0.8756 -9.4394 3.4622 17 6 0.1265 -10.4815 3.8754 18 1 -0.6826 -10.3220 4.5728 19 6 0.3948 -11.7579 3.4051 20 7 -0.3365 -12.7746 3.8079 21 14 1.7938 -12.0337 2.1983 22 1 3.0449 -12.3154 2.9471 23 1 1.4711 -13.1879 1.3216 24 1 1.9778 -10.8169 1.3672 25 6 1.4379 -7.1450 3.7474 26 6 2.0766 -2.8322 -0.0807 27 6 1.5646 -2.0285 -1.2789 28 8 2.0067 -0.6742 -1.1663 29 1 -0.3634 0.5134 0.8901 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9565 -0.8897 34 1 1.6772 1.9562 0.8903 35 1 1.6420 -0.2355 2.1399 36 1 3.1298 -0.6872 1.2710 37 1 2.9331 -2.5829 2.7948 38 1 3.0689 -5.0840 3.7887 39 1 2.0950 -4.0701 4.8803 40 1 -0.0635 -4.8275 5.6835 41 1 -1.5051 -6.7548 6.1978 42 1 -1.0625 -8.9389 5.1532 43 1 -0.1489 -13.6675 3.4785 44 1 2.2638 -7.2533 3.0601 45 1 3.1665 -2.8399 -0.0861 46 1 1.7038 -3.8546 -0.1418 47 1 1.9532 -2.4623 -2.2003 48 1 0.4751 -2.0550 -1.2956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121312153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:38 Heat of formation + Delta-G solvation = -94.342369 kcal Electronic energy + Delta-G solvation = -28400.311230 eV Core-core repulsion = 24420.618326 eV Total energy + Delta-G solvation = -3979.692904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.72950 -39.58323 -38.81434 -36.67456 -35.33325 -33.96720 -32.55137 -32.30083 -31.42694 -29.41522 -28.49642 -27.73201 -27.02153 -25.14925 -24.15536 -22.50476 -21.70907 -20.95481 -20.26932 -19.53124 -17.70951 -17.36077 -17.02454 -16.61674 -16.44738 -15.68028 -15.41562 -15.14419 -15.03054 -14.63781 -14.52696 -14.09684 -13.88273 -13.68647 -13.55862 -13.41250 -13.34451 -12.83395 -12.56117 -12.54287 -12.44033 -12.29843 -12.14827 -12.03917 -11.78900 -11.56727 -11.52822 -11.28149 -11.25779 -10.83053 -10.77878 -10.69683 -10.50701 -10.13358 -10.04254 -9.63129 -9.35562 -9.19176 -8.83800 -8.11418 -7.32393 -6.37649 -4.04233 2.03828 2.31977 2.70089 3.06823 3.24614 3.27444 3.40199 3.43358 4.21842 4.27083 4.37353 4.45407 4.48891 4.61326 4.75027 4.75861 4.85133 4.92055 5.03703 5.06553 5.11434 5.17427 5.24133 5.24770 5.31908 5.35293 5.39763 5.45609 5.54987 5.57842 5.63609 5.70178 5.72217 5.79830 5.83234 5.86938 6.00155 6.15120 6.28364 6.33558 6.56122 6.82152 6.92852 7.13128 7.24352 7.34764 7.40102 7.64503 7.84618 8.08196 8.25723 8.97941 9.61163 10.70202 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002372 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.043547 B =11800.068196 C =12734.149048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.144 3.856 6 H 0.091 0.909 7 N -0.735 5.735 8 C 0.514 3.486 9 O -0.518 6.518 10 C -0.094 4.094 11 C -0.035 4.035 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.218 4.218 15 C 0.160 3.840 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.175 4.175 26 C -0.168 4.168 27 C 0.061 3.939 28 O -0.374 6.374 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 27.623 -4.382 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.039 3.961 6 H 0.109 0.891 7 N -0.388 5.388 8 C 0.301 3.699 9 O -0.392 6.392 10 C -0.134 4.134 11 C -0.035 4.035 12 C -0.207 4.207 13 C -0.094 4.094 14 C -0.237 4.237 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.194 4.194 26 C -0.207 4.207 27 C -0.016 4.016 28 O -0.293 6.293 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.261 27.083 -5.093 28.260 hybrid contribution 0.631 -0.423 0.015 0.760 sum 6.892 26.660 -5.078 28.001 Atomic orbital electron populations 1.22507 0.95475 1.03152 1.03010 1.21411 0.93308 0.92828 0.84888 1.21755 1.01949 0.93080 1.02644 1.22486 1.02266 0.94891 0.99079 1.20966 0.99676 0.90201 0.85236 0.89108 1.46112 1.30152 1.29327 1.33178 1.20782 0.84181 0.79993 0.84978 1.90756 1.24101 1.65456 1.58867 1.20595 1.00039 0.96211 0.96562 1.18649 0.95864 0.92114 0.96901 1.20412 0.98479 0.98249 1.03588 1.20736 0.97926 0.92543 0.98216 1.21295 1.01091 0.98705 1.02585 1.19012 0.92776 0.86184 0.91176 1.83568 1.57330 1.14385 1.57187 1.20762 1.13278 0.84132 1.28190 0.87661 1.24456 0.98168 0.93744 0.97681 1.69649 1.39107 0.99775 1.43428 0.86189 0.81450 0.78367 0.80943 1.19928 1.20814 1.18388 1.19935 1.02476 0.91443 1.05548 1.22624 1.02111 1.01062 0.94872 1.22577 0.99170 0.81617 0.98235 1.87971 1.73654 1.24776 1.42909 0.91306 0.91554 0.91556 0.91747 0.91618 0.91041 0.90233 0.90453 0.76800 0.88278 0.88320 0.87774 0.87189 0.84993 0.91127 0.86886 0.90878 0.89966 0.88508 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 7.94 37.16 0.29 -1.04 16 2 C 0.12 0.86 1.11 -90.57 -0.10 0.76 16 3 C -0.14 -0.80 8.85 37.16 0.33 -0.47 16 4 C -0.15 -1.04 4.39 -26.59 -0.12 -1.16 16 5 C 0.14 1.36 2.23 -67.74 -0.15 1.21 16 6 H 0.09 1.04 6.07 -51.93 -0.32 0.73 16 7 N -0.73 -6.92 5.09 -53.62 -0.27 -7.19 16 8 C 0.51 6.89 7.79 -10.99 -0.09 6.81 16 9 O -0.52 -9.50 15.70 5.56 0.09 -9.42 16 10 C -0.09 -1.15 5.83 -29.04 -0.17 -1.32 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.19 -3.29 9.70 -39.53 -0.38 -3.67 16 13 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 14 C -0.22 -4.90 9.17 -39.39 -0.36 -5.26 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.22 -5.98 8.59 0.05 0.00 -5.98 16 17 C -0.39 -11.20 9.95 30.89 0.31 -10.90 16 18 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -25.88 13.96 55.48 0.77 -25.11 16 21 Si 0.90 22.13 28.62 -169.99 -4.86 17.26 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.17 -3.62 9.65 -39.39 -0.38 -4.00 16 26 C -0.17 -1.65 5.71 -26.59 -0.15 -1.80 16 27 C 0.06 0.55 6.52 37.21 0.24 0.79 16 28 O -0.37 -3.54 10.24 -35.23 -0.36 -3.90 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.55 4.98 -51.93 -0.26 0.29 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.50 8.60 -40.82 -0.35 2.14 16 38 H 0.10 1.01 8.08 -51.93 -0.42 0.60 16 39 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 43 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -33.87 386.01 -8.06 -41.93 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.31 Total: 4.26 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.94 Total: -17.67 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.50 Total: -32.30 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.27 Total: -19.30 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.87 -8.06 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121312153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.413 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds