Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47761 * 2 1 4 4 C 1.53085 * 109.48136 * 120.01984 * 2 1 3 5 5 C 1.53179 * 109.16155 * 62.37949 * 4 2 1 6 6 H 1.09005 * 109.61671 * 297.06732 * 5 4 2 7 7 N 1.46502 * 109.54784 * 176.84691 * 5 4 2 8 8 C 1.34773 * 120.00144 * 155.44000 * 7 5 4 9 9 O 1.21276 * 120.00268 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99842 * 180.02562 * 8 7 5 11 11 C 1.50696 * 109.47241 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96287 * 269.72614 * 11 10 8 13 13 C 1.38282 * 120.13503 * 179.76399 * 12 11 10 14 14 C 1.38127 * 120.06992 * 0.50793 * 13 12 11 15 15 C 1.38857 * 119.92791 * 359.74853 * 14 13 12 16 16 O 1.35757 * 120.06767 * 180.02562 * 15 14 13 17 17 C 1.34823 * 117.00073 * 354.44173 * 16 15 14 18 18 H 1.08002 * 120.00013 * 5.05384 * 17 16 15 19 19 C 1.38653 * 120.00264 * 185.05887 * 17 16 15 20 20 N 1.31557 * 120.00053 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46628 * 90.00385 * 21 19 17 23 23 H 1.48499 * 109.47398 * 210.00225 * 21 19 17 24 24 H 1.48498 * 109.47342 * 330.00967 * 21 19 17 25 25 C 1.38081 * 119.96505 * 90.00063 * 11 10 8 26 26 C 1.53180 * 109.03939 * 56.97874 * 5 4 2 27 27 C 1.53096 * 109.15816 * 303.02296 * 26 5 4 28 28 O 1.42896 * 109.48572 * 239.96929 * 2 1 3 29 29 H 1.08995 * 109.47557 * 299.97622 * 1 2 3 30 30 H 1.09004 * 109.47364 * 59.97477 * 1 2 3 31 31 H 1.09000 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47254 * 300.02300 * 3 2 1 34 34 H 1.09005 * 109.46615 * 60.02513 * 3 2 1 35 35 H 1.09004 * 109.52620 * 302.47527 * 4 2 1 36 36 H 1.09000 * 109.52474 * 182.28115 * 4 2 1 37 37 H 0.96996 * 119.99445 * 335.44763 * 7 5 4 38 38 H 1.09002 * 109.47203 * 300.00577 * 10 8 7 39 39 H 1.08997 * 109.47074 * 60.00350 * 10 8 7 40 40 H 1.07989 * 119.93518 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.96786 * 180.23176 * 13 12 11 42 42 H 1.07997 * 120.03648 * 179.76582 * 14 13 12 43 43 H 0.97001 * 119.99636 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.03853 * 359.97438 * 25 11 10 45 45 H 1.08999 * 109.51938 * 62.92281 * 26 5 4 46 46 H 1.08990 * 109.52569 * 183.11870 * 26 5 4 47 47 H 1.09007 * 109.47596 * 177.58894 * 27 26 5 48 48 H 1.08997 * 109.48071 * 297.62327 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0405 -0.7220 1.2496 5 6 1.5758 -2.1812 1.2123 6 1 0.4868 -2.2192 1.2417 7 7 2.1225 -2.8994 2.3662 8 6 1.4992 -3.9997 2.8323 9 8 0.4860 -4.3955 2.2962 10 6 2.0614 -4.7381 4.0197 11 6 1.1844 -5.9220 4.3362 12 6 0.1298 -5.7838 5.2206 13 6 -0.6802 -6.8666 5.5098 14 6 -0.4318 -8.0927 4.9241 15 6 0.6293 -8.2359 4.0399 16 8 0.8756 -9.4394 3.4622 17 6 0.1265 -10.4815 3.8754 18 1 -0.6826 -10.3220 4.5728 19 6 0.3948 -11.7579 3.4051 20 7 -0.3365 -12.7746 3.8079 21 14 1.7938 -12.0337 2.1983 22 1 3.0449 -12.3154 2.9471 23 1 1.4711 -13.1879 1.3216 24 1 1.9778 -10.8169 1.3672 25 6 1.4379 -7.1450 3.7474 26 6 2.0766 -2.8322 -0.0807 27 6 1.5646 -2.0285 -1.2789 28 8 2.0067 -0.6742 -1.1663 29 1 -0.3634 0.5134 0.8901 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9565 -0.8897 34 1 1.6772 1.9562 0.8903 35 1 1.6420 -0.2355 2.1399 36 1 3.1298 -0.6872 1.2710 37 1 2.9331 -2.5829 2.7948 38 1 3.0689 -5.0840 3.7887 39 1 2.0950 -4.0701 4.8803 40 1 -0.0635 -4.8275 5.6835 41 1 -1.5051 -6.7548 6.1978 42 1 -1.0625 -8.9389 5.1532 43 1 -0.1489 -13.6675 3.4785 44 1 2.2638 -7.2533 3.0601 45 1 3.1665 -2.8399 -0.0861 46 1 1.7038 -3.8546 -0.1418 47 1 1.9532 -2.4623 -2.2003 48 1 0.4751 -2.0550 -1.2956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121312153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = -117.062613 kcal Electronic energy + Delta-G solvation = -28401.296454 eV Core-core repulsion = 24420.618326 eV Total energy + Delta-G solvation = -3980.678128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54615 -40.93895 -40.13637 -38.32238 -36.25256 -34.56961 -34.49215 -33.70127 -32.44807 -31.06976 -29.27751 -28.30531 -28.14714 -27.17133 -24.91617 -23.57044 -23.13556 -22.27523 -21.39957 -20.26110 -19.66241 -18.92694 -18.10120 -17.47817 -17.13868 -16.88004 -16.78976 -16.35925 -16.14818 -15.76446 -15.65916 -15.54547 -15.34286 -14.88461 -14.85886 -14.49840 -14.34075 -14.14490 -14.03759 -13.88807 -13.38168 -13.05133 -12.98248 -12.90432 -12.81016 -12.68310 -12.52476 -12.46101 -12.35784 -12.30420 -12.12429 -11.96040 -11.94124 -11.32442 -11.26138 -10.95959 -10.89851 -10.47207 -10.07496 -9.67052 -9.07208 -8.51299 -6.24019 0.47941 0.69370 1.28430 1.33084 1.49819 1.69021 2.17554 2.26665 2.76270 2.79514 3.04362 3.13815 3.59155 3.75915 3.76815 3.82070 4.00458 4.03303 4.07028 4.11245 4.24193 4.29544 4.34801 4.43082 4.45430 4.55545 4.59677 4.65172 4.69372 4.70264 4.79436 4.83397 4.89020 4.96022 4.99749 5.03367 5.06386 5.07207 5.24275 5.32381 5.38438 5.38938 5.50954 5.64315 5.71848 5.75822 5.90793 6.24359 6.28818 6.60983 6.82949 7.33480 7.57974 8.60507 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002372 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.043547 B =11800.068196 C =12734.149048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.143 3.857 6 H 0.069 0.931 7 N -0.713 5.713 8 C 0.515 3.485 9 O -0.577 6.577 10 C -0.091 4.091 11 C -0.027 4.027 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.241 4.241 15 C 0.118 3.882 16 O -0.247 6.247 17 C -0.400 4.400 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.182 4.182 26 C -0.164 4.164 27 C 0.063 3.937 28 O -0.386 6.386 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.285 0.715 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.103 0.897 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.081 31.702 -3.783 33.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.177 4.177 5 C 0.038 3.962 6 H 0.087 0.913 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.456 6.456 10 C -0.130 4.130 11 C -0.028 4.028 12 C -0.189 4.189 13 C -0.096 4.096 14 C -0.261 4.261 15 C 0.069 3.931 16 O -0.155 6.155 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.201 4.201 26 C -0.203 4.203 27 C -0.014 4.014 28 O -0.305 6.305 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.595 31.237 -4.466 32.704 hybrid contribution -0.136 -1.332 -0.072 1.341 sum 8.460 29.904 -4.537 31.407 Atomic orbital electron populations 1.22503 0.95620 1.02270 1.03666 1.21645 0.93345 0.93718 0.84478 1.21770 1.02101 0.91809 1.03468 1.22439 1.03040 0.92717 0.99499 1.20974 0.98555 0.91821 0.84834 0.91316 1.45902 1.30207 1.27872 1.32581 1.20957 0.83479 0.80457 0.84896 1.90759 1.26869 1.67206 1.60762 1.20713 0.99797 0.94647 0.97816 1.19231 0.96013 0.92591 0.94955 1.21017 0.96754 0.99209 1.01931 1.21119 0.99036 0.91476 0.97992 1.21320 1.01117 0.99783 1.03840 1.19609 0.94584 0.86132 0.92747 1.83506 1.57974 1.15052 1.58983 1.20709 1.13272 0.85421 1.28200 0.90293 1.25291 1.00809 0.93293 0.99559 1.69732 1.41021 1.00360 1.45304 0.85210 0.78573 0.78171 0.78684 1.18628 1.19055 1.19214 1.20277 1.02262 0.91754 1.05828 1.22552 1.02366 0.99637 0.95703 1.22542 0.98917 0.81745 0.98233 1.87963 1.73873 1.24650 1.44053 0.89978 0.91612 0.93184 0.91485 0.91921 0.89173 0.88503 0.89135 0.74412 0.85606 0.83790 0.83337 0.84209 0.87563 0.90562 0.86142 0.90121 0.92768 0.87858 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 7.94 71.98 0.57 -1.81 16 2 C 0.11 1.36 1.11 -10.76 -0.01 1.35 16 3 C -0.13 -1.17 8.85 71.98 0.64 -0.54 16 4 C -0.14 -1.48 4.39 30.68 0.13 -1.34 16 5 C 0.14 2.40 2.23 45.11 0.10 2.50 16 6 H 0.07 1.52 6.07 -2.38 -0.01 1.50 16 7 N -0.71 -10.91 5.09 -441.96 -2.25 -13.16 16 8 C 0.51 12.20 7.79 87.66 0.68 12.88 16 9 O -0.58 -20.55 15.70 -3.02 -0.05 -20.60 16 10 C -0.09 -1.78 5.83 29.10 0.17 -1.61 16 11 C -0.03 -0.87 4.37 -19.88 -0.09 -0.96 16 12 C -0.17 -5.36 9.70 22.30 0.22 -5.14 16 13 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 14 C -0.24 -11.35 9.17 22.39 0.21 -11.15 16 15 C 0.12 5.91 6.65 22.58 0.15 6.06 16 16 O -0.25 -14.20 8.59 -22.74 -0.20 -14.40 16 17 C -0.40 -24.61 9.95 67.92 0.68 -23.93 16 18 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 19 C 0.01 0.52 5.49 84.83 0.47 0.98 16 20 N -0.92 -56.66 13.96 21.61 0.30 -56.36 16 21 Si 0.97 47.04 28.62 68.60 1.96 49.01 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 25 C -0.18 -7.46 9.65 22.39 0.22 -7.25 16 26 C -0.16 -3.07 5.71 30.69 0.18 -2.89 16 27 C 0.06 1.09 6.52 72.01 0.47 1.56 16 28 O -0.39 -6.70 10.24 -148.98 -1.53 -8.23 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.81 4.98 -2.39 -0.01 0.80 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.42 3.15 8.60 -92.71 -0.80 2.36 16 38 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 39 H 0.14 1.63 8.08 -2.39 -0.02 1.61 16 40 H 0.15 3.43 8.06 -2.92 -0.02 3.41 16 41 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.11 5.45 5.64 -2.91 -0.02 5.44 16 43 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.05 0.94 6.34 -2.39 -0.02 0.92 16 Total: -1.00 -80.18 386.01 3.42 -76.76 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.18 Total: 20.92 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 4.99 Total: -33.94 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.95 Total: -69.51 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.77 Total: -43.23 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.96 Total: 49.01 kcal Total: -80.18 3.42 -76.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121312153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.303 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds