Wall clock time and date at job start Tue Mar 31 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47808 * 2 1 4 4 C 1.53089 * 109.48158 * 239.97883 * 2 1 3 5 5 C 1.53203 * 109.14967 * 297.61542 * 4 2 1 6 6 H 1.09000 * 109.61468 * 62.93712 * 5 4 2 7 7 N 1.46505 * 109.53981 * 183.15743 * 5 4 2 8 8 C 1.34778 * 119.99988 * 204.56190 * 7 5 4 9 9 O 1.21277 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99924 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47108 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96360 * 269.72126 * 11 10 8 13 13 C 1.38278 * 120.13569 * 179.76395 * 12 11 10 14 14 C 1.38118 * 120.07154 * 0.51151 * 13 12 11 15 15 C 1.38858 * 119.92973 * 359.74468 * 14 13 12 16 16 O 1.35758 * 120.06844 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99910 * 354.48632 * 16 15 14 18 18 H 1.08000 * 120.00090 * 5.05810 * 17 16 15 19 19 C 1.38650 * 119.99871 * 185.05906 * 17 16 15 20 20 N 1.31566 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47135 * 89.99930 * 21 19 17 23 23 H 1.48499 * 109.47282 * 210.00029 * 21 19 17 24 24 H 1.48501 * 109.46951 * 329.99695 * 21 19 17 25 25 C 1.38080 * 119.96803 * 89.99385 * 11 10 8 26 26 C 1.53180 * 109.03910 * 303.02380 * 5 4 2 27 27 C 1.53086 * 109.16252 * 56.98631 * 26 5 4 28 28 O 1.42897 * 109.48090 * 120.02210 * 2 1 3 29 29 H 1.08998 * 109.47370 * 59.99720 * 1 2 3 30 30 H 1.08997 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47316 * 299.99907 * 1 2 3 32 32 H 1.08999 * 109.46853 * 60.00117 * 3 2 1 33 33 H 1.08995 * 109.46610 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47135 * 300.00128 * 3 2 1 35 35 H 1.09006 * 109.52176 * 57.53201 * 4 2 1 36 36 H 1.08994 * 109.52375 * 177.71917 * 4 2 1 37 37 H 0.96998 * 119.99730 * 24.55738 * 7 5 4 38 38 H 1.09001 * 109.46901 * 299.99505 * 10 8 7 39 39 H 1.08994 * 109.47375 * 59.99776 * 10 8 7 40 40 H 1.07992 * 119.92879 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.96645 * 180.25655 * 13 12 11 42 42 H 1.08006 * 120.03891 * 179.72283 * 14 13 12 43 43 H 0.97001 * 120.00315 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03354 * 359.95801 * 25 11 10 45 45 H 1.08993 * 109.52186 * 297.07316 * 26 5 4 46 46 H 1.09007 * 109.56644 * 176.91830 * 26 5 4 47 47 H 1.09001 * 109.48279 * 182.41009 * 27 26 5 48 48 H 1.08998 * 109.48768 * 62.37093 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2194 -1.2413 7 7 2.1225 -2.8998 -2.3658 8 6 1.4992 -4.0002 -2.8317 9 8 0.4859 -4.3959 -2.2955 10 6 2.0620 -4.7394 -4.0182 11 6 1.1849 -5.9232 -4.3347 12 6 1.4415 -7.1496 -3.7484 13 6 0.6360 -8.2370 -4.0325 14 6 -0.4214 -8.1043 -4.9111 15 6 -0.6784 -6.8759 -5.5054 16 8 -1.7166 -6.7425 -6.3698 17 6 -2.3889 -7.8645 -6.6969 18 1 -2.1464 -8.7995 -6.2138 19 6 -3.3915 -7.8179 -7.6534 20 7 -3.6872 -6.6788 -8.2416 21 14 -4.3235 -9.3722 -8.1061 22 1 -5.5116 -9.5109 -7.2263 23 1 -4.7630 -9.2912 -9.5223 24 1 -3.4367 -10.5502 -7.9298 25 6 0.1293 -5.7841 -5.2139 26 6 2.0765 -2.8321 0.0811 27 6 1.5645 -2.0284 1.2792 28 8 2.0066 -0.6740 1.1664 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6769 1.9563 0.8900 33 1 3.1302 1.4423 0.0005 34 1 1.6769 1.9563 -0.8899 35 1 1.6421 -0.2354 -2.1399 36 1 3.1297 -0.6872 -1.2710 37 1 2.9331 -2.5834 -2.7944 38 1 2.0964 -4.0719 -4.8792 39 1 3.0691 -5.0856 -3.7864 40 1 2.2701 -7.2568 -3.0642 41 1 0.8364 -9.1922 -3.5700 42 1 -1.0475 -8.9552 -5.1360 43 1 -4.3889 -6.6462 -8.9106 44 1 -0.0683 -4.8273 -5.6742 45 1 3.1664 -2.8399 0.0866 46 1 1.7046 -3.8549 0.1429 47 1 1.9531 -2.4619 2.2007 48 1 0.4750 -2.0549 1.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121312300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:42 Heat of formation + Delta-G solvation = -96.188181 kcal Electronic energy + Delta-G solvation = -28322.199714 eV Core-core repulsion = 24342.426769 eV Total energy + Delta-G solvation = -3979.772945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.67875 -39.48906 -38.66424 -36.49665 -35.27099 -33.92558 -32.50552 -32.16300 -31.35328 -29.17154 -28.42780 -27.67913 -26.93970 -25.21660 -24.11974 -22.43963 -21.59461 -20.98155 -20.28197 -19.50194 -17.67545 -17.19245 -16.89737 -16.57416 -16.40248 -15.64802 -15.31811 -15.04400 -14.89285 -14.56864 -14.38065 -14.24614 -13.96296 -13.65399 -13.43742 -13.35172 -13.22936 -12.77147 -12.60499 -12.45353 -12.37309 -12.25410 -11.99911 -11.86486 -11.61047 -11.49252 -11.46585 -11.23564 -11.21848 -10.79347 -10.75376 -10.58204 -10.46692 -10.41150 -9.99754 -9.57372 -9.29044 -9.13194 -8.79367 -8.01613 -7.16923 -6.39932 -3.98889 2.13687 2.44106 2.77544 3.11744 3.16302 3.17841 3.21283 3.43543 4.00551 4.26865 4.42563 4.49673 4.57382 4.65961 4.80389 4.87499 4.93461 5.03642 5.09220 5.14992 5.19055 5.23700 5.29660 5.30789 5.35888 5.44937 5.49986 5.53062 5.59999 5.67643 5.70324 5.75317 5.79619 5.82267 5.87209 5.97762 6.04383 6.22427 6.38390 6.39721 6.70742 6.95702 6.96664 7.12007 7.31471 7.41427 7.46588 7.49338 7.87935 8.05328 8.32970 9.05920 9.77212 10.78442 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.002197 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.127386 B =12742.789627 C =13421.701393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.143 3.857 6 H 0.091 0.909 7 N -0.735 5.735 8 C 0.515 3.485 9 O -0.518 6.518 10 C -0.094 4.094 11 C -0.032 4.032 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.174 4.174 26 C -0.166 4.166 27 C 0.061 3.939 28 O -0.374 6.374 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.507 12.558 14.799 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.188 4.188 5 C 0.038 3.962 6 H 0.109 0.891 7 N -0.388 5.388 8 C 0.301 3.699 9 O -0.392 6.392 10 C -0.134 4.134 11 C -0.033 4.033 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.194 4.194 26 C -0.205 4.205 27 C -0.016 4.016 28 O -0.293 6.293 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.592 12.621 15.008 23.859 hybrid contribution -0.248 -0.913 -0.608 1.124 sum 13.344 11.708 14.401 22.858 Atomic orbital electron populations 1.22511 0.95404 1.03195 1.03077 1.21416 0.93354 0.92814 0.84816 1.21754 1.01895 0.93082 1.02689 1.22493 1.02198 0.94920 0.99152 1.20971 0.99789 0.90220 0.85172 0.89054 1.46112 1.30158 1.29339 1.33195 1.20791 0.84123 0.80061 0.84905 1.90753 1.23895 1.65683 1.58833 1.20594 0.99693 0.96445 0.96664 1.18653 0.95229 0.92930 0.96505 1.20341 1.02893 0.93190 1.05138 1.20675 0.94515 0.97501 0.96623 1.21173 1.01917 0.98489 1.03432 1.19278 0.87695 0.92955 0.89940 1.83977 1.36526 1.34494 1.53382 1.21315 1.15987 0.86988 1.22359 0.89136 1.25275 0.97036 0.98720 0.95544 1.70045 1.29858 1.24921 1.25224 0.85720 0.79544 0.80074 0.78134 1.19922 1.20298 1.19227 1.19940 0.97338 0.97874 1.04232 1.22607 1.01981 1.00937 0.94958 1.22569 0.99206 0.81722 0.98122 1.87964 1.73670 1.24724 1.42990 0.91194 0.91548 0.91580 0.91641 0.91777 0.90976 0.90117 0.90488 0.76820 0.88273 0.88427 0.87996 0.87503 0.85629 0.92120 0.86882 0.90968 0.90119 0.88614 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 7.93 37.16 0.29 -1.19 16 2 C 0.12 0.93 1.11 -90.57 -0.10 0.83 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.15 -1.15 4.40 -26.58 -0.12 -1.27 16 5 C 0.14 1.44 2.23 -67.73 -0.15 1.29 16 6 H 0.09 1.14 6.07 -51.93 -0.32 0.82 16 7 N -0.74 -7.45 5.09 -53.61 -0.27 -7.73 16 8 C 0.51 7.34 7.79 -10.99 -0.09 7.25 16 9 O -0.52 -9.95 15.70 5.56 0.09 -9.86 16 10 C -0.09 -1.24 5.83 -29.04 -0.17 -1.41 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.20 -3.59 9.70 -39.53 -0.38 -3.98 16 13 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 14 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 15 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 16 O -0.18 -5.31 9.76 0.03 0.00 -5.31 16 17 C -0.39 -11.21 9.49 30.88 0.29 -10.92 16 18 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 21 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 26 C -0.17 -1.60 5.71 -26.59 -0.15 -1.76 16 27 C 0.06 0.54 6.52 37.20 0.24 0.78 16 28 O -0.37 -3.60 10.24 -35.23 -0.36 -3.96 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.61 4.98 -51.93 -0.26 0.35 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 38 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.51 6.34 -51.93 -0.33 0.18 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.97 387.14 -8.22 -43.19 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.29 Total: 6.12 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.95 Total: -19.10 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.49 Total: -32.85 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.27 Total: -19.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.97 -8.22 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121312300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.997 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds