Wall clock time and date at job start Tue Mar 31 2020 17:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47808 * 2 1 4 4 C 1.53089 * 109.48158 * 239.97883 * 2 1 3 5 5 C 1.53203 * 109.14967 * 297.61542 * 4 2 1 6 6 H 1.09000 * 109.61468 * 62.93712 * 5 4 2 7 7 N 1.46505 * 109.53981 * 183.15743 * 5 4 2 8 8 C 1.34778 * 119.99988 * 204.56190 * 7 5 4 9 9 O 1.21277 * 119.99752 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99924 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47108 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96360 * 269.72126 * 11 10 8 13 13 C 1.38278 * 120.13569 * 179.76395 * 12 11 10 14 14 C 1.38118 * 120.07154 * 0.51151 * 13 12 11 15 15 C 1.38858 * 119.92973 * 359.74468 * 14 13 12 16 16 O 1.35758 * 120.06844 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99910 * 354.48632 * 16 15 14 18 18 H 1.08000 * 120.00090 * 5.05810 * 17 16 15 19 19 C 1.38650 * 119.99871 * 185.05906 * 17 16 15 20 20 N 1.31566 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47135 * 89.99930 * 21 19 17 23 23 H 1.48499 * 109.47282 * 210.00029 * 21 19 17 24 24 H 1.48501 * 109.46951 * 329.99695 * 21 19 17 25 25 C 1.38080 * 119.96803 * 89.99385 * 11 10 8 26 26 C 1.53180 * 109.03910 * 303.02380 * 5 4 2 27 27 C 1.53086 * 109.16252 * 56.98631 * 26 5 4 28 28 O 1.42897 * 109.48090 * 120.02210 * 2 1 3 29 29 H 1.08998 * 109.47370 * 59.99720 * 1 2 3 30 30 H 1.08997 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47316 * 299.99907 * 1 2 3 32 32 H 1.08999 * 109.46853 * 60.00117 * 3 2 1 33 33 H 1.08995 * 109.46610 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47135 * 300.00128 * 3 2 1 35 35 H 1.09006 * 109.52176 * 57.53201 * 4 2 1 36 36 H 1.08994 * 109.52375 * 177.71917 * 4 2 1 37 37 H 0.96998 * 119.99730 * 24.55738 * 7 5 4 38 38 H 1.09001 * 109.46901 * 299.99505 * 10 8 7 39 39 H 1.08994 * 109.47375 * 59.99776 * 10 8 7 40 40 H 1.07992 * 119.92879 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.96645 * 180.25655 * 13 12 11 42 42 H 1.08006 * 120.03891 * 179.72283 * 14 13 12 43 43 H 0.97001 * 120.00315 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03354 * 359.95801 * 25 11 10 45 45 H 1.08993 * 109.52186 * 297.07316 * 26 5 4 46 46 H 1.09007 * 109.56644 * 176.91830 * 26 5 4 47 47 H 1.09001 * 109.48279 * 182.41009 * 27 26 5 48 48 H 1.08998 * 109.48768 * 62.37093 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2194 -1.2413 7 7 2.1225 -2.8998 -2.3658 8 6 1.4992 -4.0002 -2.8317 9 8 0.4859 -4.3959 -2.2955 10 6 2.0620 -4.7394 -4.0182 11 6 1.1849 -5.9232 -4.3347 12 6 1.4415 -7.1496 -3.7484 13 6 0.6360 -8.2370 -4.0325 14 6 -0.4214 -8.1043 -4.9111 15 6 -0.6784 -6.8759 -5.5054 16 8 -1.7166 -6.7425 -6.3698 17 6 -2.3889 -7.8645 -6.6969 18 1 -2.1464 -8.7995 -6.2138 19 6 -3.3915 -7.8179 -7.6534 20 7 -3.6872 -6.6788 -8.2416 21 14 -4.3235 -9.3722 -8.1061 22 1 -5.5116 -9.5109 -7.2263 23 1 -4.7630 -9.2912 -9.5223 24 1 -3.4367 -10.5502 -7.9298 25 6 0.1293 -5.7841 -5.2139 26 6 2.0765 -2.8321 0.0811 27 6 1.5645 -2.0284 1.2792 28 8 2.0066 -0.6740 1.1664 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6769 1.9563 0.8900 33 1 3.1302 1.4423 0.0005 34 1 1.6769 1.9563 -0.8899 35 1 1.6421 -0.2354 -2.1399 36 1 3.1297 -0.6872 -1.2710 37 1 2.9331 -2.5834 -2.7944 38 1 2.0964 -4.0719 -4.8792 39 1 3.0691 -5.0856 -3.7864 40 1 2.2701 -7.2568 -3.0642 41 1 0.8364 -9.1922 -3.5700 42 1 -1.0475 -8.9552 -5.1360 43 1 -4.3889 -6.6462 -8.9106 44 1 -0.0683 -4.8273 -5.6742 45 1 3.1664 -2.8399 0.0866 46 1 1.7046 -3.8549 0.1429 47 1 1.9531 -2.4619 2.2007 48 1 0.4750 -2.0549 1.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121312300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:41 Heat of formation + Delta-G solvation = -120.100411 kcal Electronic energy + Delta-G solvation = -28323.236626 eV Core-core repulsion = 24342.426769 eV Total energy + Delta-G solvation = -3980.809857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.54331 -40.85142 -40.09707 -38.21352 -36.25683 -34.57215 -34.35069 -33.65239 -32.43406 -30.87219 -29.27076 -28.32164 -28.16444 -27.23219 -24.91220 -23.49005 -23.18033 -22.36265 -21.44100 -20.27604 -19.50106 -18.81287 -18.10995 -17.48598 -17.13628 -16.83395 -16.60301 -16.39394 -16.10452 -15.91298 -15.65004 -15.50993 -15.26016 -15.03796 -14.71284 -14.46856 -14.30807 -14.05199 -13.94330 -13.60332 -13.39898 -13.00103 -12.97661 -12.90263 -12.79063 -12.69043 -12.47442 -12.39746 -12.32511 -12.22314 -12.12820 -12.10724 -11.96406 -11.26866 -11.21119 -10.94818 -10.80559 -10.47317 -10.08396 -9.63632 -8.98215 -8.47672 -6.16255 0.51764 0.75451 1.33316 1.43142 1.51367 1.67622 2.16035 2.18182 2.77685 2.84936 3.17602 3.43921 3.57881 3.76359 3.79610 3.81760 4.01964 4.02030 4.09728 4.11909 4.23350 4.31553 4.36152 4.44342 4.44982 4.58039 4.59252 4.64873 4.69865 4.73450 4.78549 4.82818 4.87334 4.98346 5.01257 5.05495 5.06326 5.09049 5.12638 5.30095 5.31241 5.37337 5.49774 5.64815 5.72502 5.75116 6.02355 6.23281 6.28228 6.59489 6.96874 7.31988 7.78545 8.75971 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.002197 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.127386 B =12742.789627 C =13421.701393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 C -0.134 4.134 4 C -0.141 4.141 5 C 0.140 3.860 6 H 0.062 0.938 7 N -0.713 5.713 8 C 0.515 3.485 9 O -0.577 6.577 10 C -0.091 4.091 11 C -0.025 4.025 12 C -0.181 4.181 13 C -0.074 4.074 14 C -0.247 4.247 15 C 0.111 3.889 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.252 1.252 25 C -0.193 4.193 26 C -0.159 4.159 27 C 0.061 3.939 28 O -0.383 6.383 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.418 0.582 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.117 0.883 43 H 0.273 0.727 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.694 12.492 16.221 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.071 3.929 3 C -0.191 4.191 4 C -0.179 4.179 5 C 0.036 3.964 6 H 0.080 0.920 7 N -0.366 5.366 8 C 0.303 3.697 9 O -0.456 6.456 10 C -0.131 4.131 11 C -0.026 4.026 12 C -0.199 4.199 13 C -0.092 4.092 14 C -0.267 4.267 15 C 0.061 3.939 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.176 1.176 25 C -0.212 4.212 26 C -0.197 4.197 27 C -0.016 4.016 28 O -0.303 6.303 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.256 0.744 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.873 12.592 16.464 26.727 hybrid contribution -0.976 -0.778 -0.818 1.492 sum 15.897 11.815 15.646 25.240 Atomic orbital electron populations 1.22514 0.95927 1.02230 1.03519 1.21588 0.93074 0.93756 0.84501 1.21764 1.02217 0.91793 1.03373 1.22454 1.03171 0.92909 0.99365 1.20998 0.98317 0.91856 0.85267 0.91976 1.45902 1.30188 1.27794 1.32701 1.20936 0.83399 0.80665 0.84737 1.90751 1.26506 1.67563 1.60776 1.20710 1.00394 0.94815 0.97143 1.19201 0.93997 0.95325 0.94051 1.20970 1.02876 0.92261 1.03794 1.21132 0.93033 0.99816 0.95232 1.21294 1.03354 0.97386 1.04632 1.19887 0.88161 0.95181 0.90633 1.83936 1.38894 1.35358 1.55965 1.21823 1.16640 0.87487 1.23060 0.88270 1.26619 0.97763 1.02743 0.95046 1.70193 1.31382 1.27780 1.26744 0.84574 0.78011 0.75430 0.78088 1.18946 1.19324 1.17585 1.20222 0.98490 0.96906 1.05605 1.22515 1.02531 0.99735 0.94962 1.22586 0.98860 0.81698 0.98450 1.87958 1.73775 1.24805 1.43765 0.90538 0.93218 0.91380 0.91755 0.91223 0.89585 0.89284 0.88763 0.74442 0.86015 0.83839 0.83538 0.83748 0.86498 0.91842 0.87604 0.89670 0.92195 0.87273 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 7.93 71.98 0.57 -2.32 16 2 C 0.11 1.58 1.11 -10.76 -0.01 1.57 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.14 -1.83 4.40 30.69 0.13 -1.70 16 5 C 0.14 2.62 2.23 45.12 0.10 2.72 16 6 H 0.06 1.57 6.07 -2.39 -0.01 1.56 16 7 N -0.71 -12.54 5.09 -441.92 -2.25 -14.79 16 8 C 0.52 13.60 7.79 87.66 0.68 14.29 16 9 O -0.58 -22.06 15.70 -3.02 -0.05 -22.11 16 10 C -0.09 -2.09 5.83 29.10 0.17 -1.92 16 11 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 12 C -0.18 -5.97 9.70 22.30 0.22 -5.76 16 13 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 14 C -0.25 -11.56 9.17 22.39 0.21 -11.35 16 15 C 0.11 5.93 6.65 22.58 0.15 6.08 16 16 O -0.23 -14.86 9.76 -22.79 -0.22 -15.08 16 17 C -0.41 -25.18 9.49 67.92 0.64 -24.53 16 18 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 20 N -0.92 -58.30 13.67 21.61 0.30 -58.01 16 21 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.19 -8.78 9.65 22.39 0.22 -8.57 16 26 C -0.16 -2.84 5.71 30.68 0.18 -2.66 16 27 C 0.06 1.03 6.52 72.01 0.47 1.50 16 28 O -0.38 -6.75 10.24 -148.98 -1.53 -8.27 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.94 4.98 -2.39 -0.01 0.93 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 4.09 8.60 -92.71 -0.80 3.30 16 38 H 0.12 2.30 8.08 -2.39 -0.02 2.28 16 39 H 0.14 2.03 8.08 -2.39 -0.02 2.01 16 40 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.12 5.52 5.64 -2.91 -0.02 5.51 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 47 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.05 0.89 6.34 -2.39 -0.02 0.88 16 Total: -1.00 -83.84 387.14 3.42 -80.42 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.18 Total: 29.45 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 4.96 Total: -37.89 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.95 Total: -72.80 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.79 Total: -45.47 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -83.84 3.42 -80.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121312300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.678 kcal (2) G-P(sol) polarization free energy of solvation -83.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds