Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.48100 * 2 1 4 4 C 1.53092 * 109.47678 * 239.98065 * 2 1 3 5 5 C 1.53203 * 109.15279 * 297.61434 * 4 2 1 6 6 H 1.09002 * 109.53709 * 62.89730 * 5 4 2 7 7 N 1.46493 * 109.61382 * 183.11531 * 5 4 2 8 8 C 1.34776 * 119.99924 * 204.60877 * 7 5 4 9 9 O 1.21282 * 120.00307 * 359.97438 * 8 7 5 10 10 C 1.50708 * 120.00116 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.46732 * 179.97438 * 10 8 7 12 12 C 1.38303 * 119.93216 * 269.72089 * 11 10 8 13 13 C 1.38100 * 120.06911 * 179.72898 * 12 11 10 14 14 C 1.38887 * 119.92990 * 0.55261 * 13 12 11 15 15 O 1.35752 * 120.06809 * 179.74806 * 14 13 12 16 16 C 1.34822 * 116.99694 * 174.44236 * 15 14 13 17 17 H 1.08004 * 120.00437 * 5.05216 * 16 15 14 18 18 C 1.38656 * 120.00102 * 185.05605 * 16 15 14 19 19 N 1.31557 * 119.99587 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47268 * 89.99745 * 20 18 16 22 22 H 1.48502 * 109.46889 * 210.00096 * 20 18 16 23 23 H 1.48503 * 109.47097 * 329.99644 * 20 18 16 24 24 C 1.38881 * 119.86133 * 359.72243 * 14 13 12 25 25 C 1.38102 * 119.92824 * 0.02562 * 24 14 13 26 26 C 1.53174 * 109.04215 * 303.02853 * 5 4 2 27 27 C 1.53102 * 109.16334 * 56.97536 * 26 5 4 28 28 O 1.42892 * 109.41558 * 302.39376 * 27 26 5 29 29 H 1.09002 * 109.47071 * 59.98986 * 1 2 3 30 30 H 1.08997 * 109.46633 * 299.99952 * 1 2 3 31 31 H 1.08991 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47292 * 60.00455 * 3 2 1 33 33 H 1.09003 * 109.46807 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47671 * 299.99996 * 3 2 1 35 35 H 1.08999 * 109.52450 * 57.53516 * 4 2 1 36 36 H 1.08996 * 109.52197 * 177.71807 * 4 2 1 37 37 H 0.96999 * 120.00657 * 24.60569 * 7 5 4 38 38 H 1.08993 * 109.46971 * 299.99403 * 10 8 7 39 39 H 1.08995 * 109.47055 * 59.99866 * 10 8 7 40 40 H 1.08003 * 119.96466 * 0.02562 * 12 11 10 41 41 H 1.07994 * 120.04040 * 180.27787 * 13 12 11 42 42 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 43 43 H 1.07992 * 120.03740 * 179.97438 * 24 14 13 44 44 H 1.08008 * 119.96264 * 180.02562 * 25 24 14 45 45 H 1.09005 * 109.52150 * 297.07722 * 26 5 4 46 46 H 1.08995 * 109.57614 * 176.91523 * 26 5 4 47 47 H 1.09000 * 109.47928 * 182.40769 * 27 26 5 48 48 H 1.09005 * 109.48334 * 62.38417 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 1.5756 -2.1814 -1.2121 6 1 0.4866 -2.2179 -1.2408 7 7 2.1206 -2.9010 -2.3659 8 6 1.4955 -4.0007 -2.8309 9 8 0.4820 -4.3949 -2.2939 10 6 2.0565 -4.7413 -4.0176 11 6 1.1774 -5.9241 -4.3328 12 6 1.4333 -7.1500 -3.7458 13 6 0.6262 -8.2344 -4.0283 14 6 -0.4365 -8.0958 -4.9117 15 8 -1.2286 -9.1611 -5.1954 16 6 -2.3088 -8.9319 -5.9689 17 1 -2.4668 -7.9543 -6.3999 18 6 -3.2169 -9.9513 -6.2111 19 7 -3.0243 -11.1422 -5.6864 20 14 -4.7140 -9.6336 -7.2822 21 1 -4.3812 -9.9302 -8.6986 22 1 -5.8315 -10.5073 -6.8428 23 1 -5.1195 -8.2105 -7.1566 24 6 -0.6874 -6.8649 -5.5039 25 6 0.1203 -5.7830 -5.2133 26 6 2.0764 -2.8323 0.0809 27 6 1.5646 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6771 1.9563 0.8900 33 1 3.1303 1.4421 -0.0005 34 1 1.6771 1.9564 -0.8900 35 1 1.6421 -0.2354 -2.1399 36 1 3.1297 -0.6872 -1.2711 37 1 2.9314 -2.5860 -2.7953 38 1 2.0912 -4.0743 -4.8788 39 1 3.0633 -5.0888 -3.7862 40 1 2.2623 -7.2581 -3.0620 41 1 0.8237 -9.1903 -3.5662 42 1 -3.6594 -11.8555 -5.8561 43 1 -1.5126 -6.7540 -6.1916 44 1 -0.0746 -4.8254 -5.6732 45 1 3.1664 -2.8400 0.0864 46 1 1.7045 -3.8549 0.1428 47 1 1.9531 -2.4621 2.2005 48 1 0.4750 -2.0549 1.2961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153913187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -96.536479 kcal Electronic energy + Delta-G solvation = -28186.694489 eV Core-core repulsion = 24206.906441 eV Total energy + Delta-G solvation = -3979.788048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.69923 -39.47971 -38.68201 -36.53296 -35.27504 -33.95980 -32.52305 -32.03327 -30.90581 -30.10927 -28.43244 -27.71749 -26.59770 -25.13045 -24.08390 -22.36806 -21.93215 -20.89431 -20.19427 -19.49583 -17.94128 -17.22733 -16.90639 -16.67142 -16.44616 -15.68765 -15.28211 -15.01904 -14.70835 -14.51421 -14.47511 -14.06050 -13.94430 -13.65383 -13.50664 -13.31178 -13.30424 -12.81267 -12.67238 -12.56237 -12.46379 -12.28295 -12.03407 -11.87134 -11.63682 -11.52233 -11.46517 -11.24365 -11.23568 -10.82576 -10.73735 -10.58913 -10.48494 -10.40196 -10.01173 -9.56238 -9.28763 -9.14715 -8.78595 -8.11058 -7.12308 -6.41203 -3.99672 2.28627 2.29940 2.77506 3.10419 3.15534 3.17972 3.21223 3.40821 4.00005 4.23416 4.38930 4.46723 4.56870 4.62472 4.77863 4.85504 4.95846 5.05352 5.09840 5.12280 5.19389 5.25687 5.28710 5.32618 5.35626 5.35931 5.41473 5.47252 5.56220 5.64587 5.68167 5.73240 5.76582 5.79774 5.83859 5.88709 6.01261 6.25588 6.38177 6.45846 6.74373 6.93084 6.95528 7.09398 7.27845 7.40962 7.46121 7.49842 7.88133 8.04154 8.33615 9.04540 9.75435 10.76979 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.002068 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.831586 B =13533.979458 C =13934.223837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.143 3.857 6 H 0.090 0.910 7 N -0.737 5.737 8 C 0.509 3.491 9 O -0.519 6.519 10 C -0.080 4.080 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.232 4.232 25 C -0.057 4.057 26 C -0.166 4.166 27 C 0.061 3.939 28 O -0.374 6.374 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 23.390 8.778 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.038 3.962 6 H 0.108 0.892 7 N -0.390 5.390 8 C 0.296 3.704 9 O -0.393 6.393 10 C -0.120 4.120 11 C -0.171 4.171 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.252 4.252 25 C -0.075 4.075 26 C -0.205 4.205 27 C -0.016 4.016 28 O -0.293 6.293 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.231 0.769 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.710 22.695 9.354 27.197 hybrid contribution -0.543 0.144 -0.948 1.102 sum 11.167 22.839 8.406 26.776 Atomic orbital electron populations 1.22507 0.95455 1.03172 1.03022 1.21414 0.93320 0.92814 0.84873 1.21754 1.01921 0.93093 1.02656 1.22488 1.02205 0.94963 0.99063 1.20951 0.99711 0.90184 0.85312 0.89171 1.46163 1.30138 1.29502 1.33158 1.21093 0.84173 0.79913 0.85193 1.90742 1.24070 1.65629 1.58852 1.20412 0.99511 0.96217 0.95841 1.18626 1.00465 0.93461 1.04532 1.20394 0.97915 0.91969 0.97535 1.20155 0.98141 0.99499 1.03267 1.19383 0.90929 0.87384 0.92043 1.83975 1.33809 1.29122 1.61284 1.21322 0.99279 0.99007 1.27064 0.89108 1.25289 0.98646 0.94679 0.97985 1.70042 1.36234 1.01688 1.41888 0.85714 0.79757 0.78673 0.79295 1.19910 1.20269 1.19220 1.21101 1.03906 0.93385 1.06761 1.20503 0.93656 0.97060 0.96293 1.22611 1.02001 1.00981 0.94930 1.22575 0.99190 0.81673 0.98190 1.87964 1.73656 1.24760 1.42944 0.91285 0.91569 0.91545 0.91623 0.91763 0.91034 0.90243 0.90505 0.76911 0.89063 0.89016 0.87437 0.86564 0.92076 0.85611 0.87886 0.90966 0.90068 0.88566 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 7.93 37.16 0.29 -1.09 16 2 C 0.12 0.88 1.11 -90.57 -0.10 0.78 16 3 C -0.14 -0.82 8.85 37.16 0.33 -0.49 16 4 C -0.15 -1.07 4.40 -26.58 -0.12 -1.19 16 5 C 0.14 1.37 2.23 -67.74 -0.15 1.22 16 6 H 0.09 1.07 6.06 -51.93 -0.31 0.75 16 7 N -0.74 -7.04 5.09 -53.62 -0.27 -7.31 16 8 C 0.51 6.90 7.79 -10.98 -0.09 6.82 16 9 O -0.52 -9.64 15.70 5.56 0.09 -9.55 16 10 C -0.08 -0.99 5.83 -29.03 -0.17 -1.16 16 11 C -0.17 -2.97 4.38 -104.58 -0.46 -3.43 16 12 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 13 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16 14 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 15 O -0.18 -5.25 9.76 0.06 0.00 -5.24 16 16 C -0.39 -11.19 9.49 30.89 0.29 -10.90 16 17 H 0.09 2.42 5.20 -52.48 -0.27 2.14 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 20 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 26 C -0.17 -1.58 5.71 -26.59 -0.15 -1.74 16 27 C 0.06 0.53 6.51 37.21 0.24 0.77 16 28 O -0.37 -3.51 10.24 -35.23 -0.36 -3.87 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.57 4.97 -51.93 -0.26 0.31 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.56 8.61 -40.82 -0.35 2.21 16 38 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 44 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.68 387.14 -8.22 -42.90 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.29 Total: 5.35 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.95 Total: -19.00 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.49 Total: -32.35 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.27 Total: -18.66 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.68 -8.22 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153913187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.633 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds